Wall clock time and date at job start Tue Mar 31 2020 01:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47274 * 171.35440 * 3 2 1 5 5 C 1.36936 * 119.99817 * 264.35338 * 4 3 2 6 6 H 1.08000 * 119.99354 * 196.59294 * 5 4 3 7 7 C 1.38806 * 120.00104 * 16.59818 * 5 4 3 8 8 N 1.31625 * 120.00157 * 22.38128 * 7 5 4 9 9 Si 1.86797 * 120.00068 * 202.37830 * 7 5 4 10 10 H 1.48498 * 109.47064 * 59.99883 * 9 7 5 11 11 H 1.48496 * 109.47312 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47197 * 299.99962 * 9 7 5 13 13 C 1.46497 * 119.99849 * 84.35129 * 4 3 2 14 14 C 1.50703 * 109.47239 * 270.00014 * 13 4 3 15 15 O 1.21277 * 119.99954 * 0.02562 * 14 13 4 16 16 N 1.34772 * 120.00301 * 179.97438 * 14 13 4 17 17 C 1.46504 * 120.00381 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47265 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.46774 * 65.00460 * 18 17 16 20 20 C 1.53002 * 109.46774 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.46966 * 299.99326 * 20 19 18 22 22 C 1.53002 * 109.47077 * 60.00685 * 21 20 19 23 23 C 1.53002 * 109.46663 * 299.99501 * 22 21 20 24 24 H 4.40642 * 5.51358 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47580 * 51.35131 * 3 2 1 26 26 H 1.09009 * 109.47344 * 291.35266 * 3 2 1 27 27 H 0.96991 * 120.00153 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47389 * 150.00707 * 13 4 3 29 29 H 1.09001 * 109.47650 * 30.00145 * 13 4 3 30 30 H 0.97000 * 119.99762 * 0.02562 * 16 14 13 31 31 H 1.09009 * 109.46721 * 60.00030 * 17 16 14 32 32 H 1.08991 * 109.46815 * 300.00601 * 17 16 14 33 33 H 1.08994 * 109.47185 * 305.00371 * 18 17 16 34 34 H 1.09002 * 109.47052 * 299.99489 * 19 18 17 35 35 H 1.08993 * 109.47768 * 59.99691 * 19 18 17 36 36 H 1.09008 * 109.47153 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47185 * 59.99911 * 20 19 18 38 38 H 1.08994 * 109.47646 * 300.00303 * 21 20 19 39 39 H 1.09003 * 109.47154 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47305 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47194 * 59.99341 * 22 21 20 42 42 H 1.08993 * 109.47750 * 300.00356 * 23 22 21 43 43 H 1.09000 * 109.47308 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3664 -0.2076 5 6 3.4718 1.7889 -1.4656 6 1 4.0726 2.6771 -1.5935 7 6 3.0423 1.0755 -2.5761 8 7 1.9895 0.2905 -2.4872 9 14 3.9582 1.2295 -4.1968 10 1 5.3659 0.7940 -4.0131 11 1 3.3039 0.3733 -5.2185 12 1 3.9326 2.6444 -4.6473 13 6 3.2598 2.2801 0.9305 14 6 1.9698 3.0378 1.1117 15 8 1.0368 2.8343 0.3641 16 7 1.8524 3.9409 2.1052 17 6 0.5982 4.6771 2.2817 18 6 0.7294 5.6306 3.4711 19 6 1.7827 6.6950 3.1575 20 6 1.9135 7.6488 4.3467 21 6 0.5666 8.3257 4.6080 22 6 -0.4868 7.2613 4.9216 23 6 -0.6176 6.3075 3.7324 24 1 -1.0501 -0.0004 0.0003 25 1 3.0097 -0.6410 -0.8026 26 1 3.0096 -0.3734 0.9572 27 1 1.6895 -0.2083 -3.2631 28 1 4.0711 2.9837 0.7436 29 1 3.4753 1.7086 1.8333 30 1 2.5985 4.1035 2.7034 31 1 -0.2130 3.9733 2.4685 32 1 0.3825 5.2489 1.3792 33 1 1.0320 5.0692 4.3550 34 1 2.7423 6.2127 2.9709 35 1 1.4802 7.2563 2.2736 36 1 2.6643 8.4069 4.1235 37 1 2.2159 7.0878 5.2309 38 1 0.2642 8.8867 3.7238 39 1 0.6598 9.0056 5.4549 40 1 -1.4464 7.7436 5.1082 41 1 -0.1845 6.7003 5.8058 42 1 -0.9199 6.8684 2.8481 43 1 -1.3677 5.5489 3.9559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281327476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:38 Heat of formation + Delta-G solvation = 25.953640 kcal Electronic energy + Delta-G solvation = -21901.052732 eV Core-core repulsion = 18754.967008 eV Total energy + Delta-G solvation = -3146.085724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.30954 -38.19014 -35.62453 -34.14362 -31.46108 -31.34212 -30.96470 -30.68985 -27.39868 -25.89645 -25.05466 -22.79694 -21.97453 -21.08041 -20.01649 -19.38943 -17.37375 -16.44001 -16.29194 -15.42554 -15.35324 -14.90048 -14.62402 -14.26713 -14.22017 -13.87376 -13.45419 -13.25554 -12.99258 -12.48760 -12.36279 -12.19492 -12.15637 -11.74988 -11.36150 -11.28751 -11.21615 -11.09123 -10.80357 -10.64912 -10.58182 -10.27600 -10.23132 -10.16961 -9.93472 -9.00972 -8.67890 -8.56178 -8.32591 -8.21058 -6.93612 -5.68656 -3.10835 3.42815 3.48548 3.49713 3.72755 3.85950 4.39649 4.50862 4.58368 4.59763 4.60703 4.71517 5.00749 5.09979 5.19923 5.31787 5.34107 5.35874 5.43623 5.48668 5.68397 5.71152 5.79392 5.84180 5.84719 5.98876 5.99578 6.02986 6.04967 6.11148 6.13801 6.20183 6.26314 6.33385 6.39907 6.78321 7.12311 7.30722 7.61627 7.79902 8.20436 8.37938 9.15036 9.28976 9.49985 9.82611 10.26694 11.33848 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.003837 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.577858 B = 7295.979987 C = 7785.365794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.559 5.559 5 C -0.267 4.267 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.128 3.872 14 C 0.463 3.537 15 O -0.496 6.496 16 N -0.751 5.751 17 C 0.126 3.874 18 C -0.096 4.096 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.183 0.817 25 H 0.097 0.903 26 H 0.034 0.966 27 H 0.254 0.746 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.388 0.612 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 11.442 15.937 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.276 5.276 5 C -0.396 4.396 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.004 4.004 14 C 0.247 3.753 15 O -0.366 6.366 16 N -0.408 5.408 17 C 0.002 3.998 18 C -0.115 4.115 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.201 0.799 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.221 0.779 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.739 11.122 15.152 18.810 hybrid contribution 0.074 0.458 -0.753 0.885 sum -0.665 11.580 14.399 18.490 Atomic orbital electron populations 1.23946 0.95119 1.04079 1.07729 1.23936 0.95009 0.96696 0.94073 1.17872 0.83242 0.86599 0.97790 1.44204 1.72922 1.07001 1.03501 1.19125 1.26416 1.11881 0.82183 0.90763 1.24940 0.96113 1.00547 0.97608 1.70188 1.21027 1.31239 1.29417 0.86391 0.79544 0.77457 0.83492 1.20943 1.21739 1.21092 1.21053 0.93183 0.93411 0.92716 1.23352 0.93088 0.79418 0.79475 1.90757 1.40184 1.63159 1.42529 1.46519 1.15514 1.43655 1.35098 1.21192 0.87926 0.93705 0.97002 1.21381 0.95941 0.95958 0.98175 1.21595 0.98919 0.96611 0.98083 1.21537 0.97003 0.98571 0.98555 1.21544 0.95323 0.97674 1.01246 1.21515 0.98760 0.97050 0.98191 1.21513 0.96562 0.98496 0.98529 0.79942 0.88491 0.94775 0.93598 0.90627 0.91468 0.77866 0.92503 0.92455 0.90851 0.91704 0.91832 0.92160 0.92096 0.92060 0.92360 0.92152 0.92077 0.91720 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.44 18.78 29.55 0.56 -6.88 16 2 C -0.09 -2.49 10.03 -37.13 -0.37 -2.86 16 3 C 0.27 6.65 5.45 -6.83 -0.04 6.61 16 4 N -0.56 -13.97 2.09 -177.95 -0.37 -14.34 16 5 C -0.27 -7.36 9.66 -15.06 -0.15 -7.51 16 6 H 0.07 1.99 7.90 -52.49 -0.41 1.58 16 7 C 0.01 0.23 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -26.06 9.50 55.49 0.53 -25.53 16 9 Si 0.90 21.99 29.61 -169.99 -5.03 16.96 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 C 0.13 2.56 6.18 -5.19 -0.03 2.52 16 14 C 0.46 9.67 7.81 -10.99 -0.09 9.58 16 15 O -0.50 -13.18 14.43 5.56 0.08 -13.10 16 16 N -0.75 -11.57 5.28 -60.29 -0.32 -11.89 16 17 C 0.13 1.82 5.06 -4.04 -0.02 1.80 16 18 C -0.10 -0.99 2.23 -90.62 -0.20 -1.19 16 19 C -0.11 -1.10 5.08 -26.73 -0.14 -1.24 16 20 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 24 H 0.18 4.13 7.80 -54.08 -0.42 3.70 16 25 H 0.10 2.56 6.41 -51.93 -0.33 2.23 16 26 H 0.03 0.72 7.97 -51.92 -0.41 0.30 16 27 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 29 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 30 H 0.39 4.66 7.65 -40.82 -0.31 4.35 16 31 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.63 7.18 -51.93 -0.37 0.25 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -34.22 347.25 -8.37 -42.59 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.31 Total: 3.63 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.17 Total: -3.55 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.16 Total: -51.76 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.22 -8.37 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281327476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.544 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds