Wall clock time and date at job start Tue Mar 31 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47274 * 171.35440 * 3 2 1 5 5 C 1.36936 * 119.99817 * 264.35338 * 4 3 2 6 6 H 1.08000 * 119.99354 * 196.59294 * 5 4 3 7 7 C 1.38806 * 120.00104 * 16.59818 * 5 4 3 8 8 N 1.31625 * 120.00157 * 22.38128 * 7 5 4 9 9 Si 1.86797 * 120.00068 * 202.37830 * 7 5 4 10 10 H 1.48498 * 109.47064 * 59.99883 * 9 7 5 11 11 H 1.48496 * 109.47312 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47197 * 299.99962 * 9 7 5 13 13 C 1.46497 * 119.99849 * 84.35129 * 4 3 2 14 14 C 1.50703 * 109.47239 * 270.00014 * 13 4 3 15 15 O 1.21277 * 119.99954 * 0.02562 * 14 13 4 16 16 N 1.34772 * 120.00301 * 179.97438 * 14 13 4 17 17 C 1.46504 * 120.00381 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47265 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.46774 * 65.00460 * 18 17 16 20 20 C 1.53002 * 109.46774 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.46966 * 299.99326 * 20 19 18 22 22 C 1.53002 * 109.47077 * 60.00685 * 21 20 19 23 23 C 1.53002 * 109.46663 * 299.99501 * 22 21 20 24 24 H 4.40642 * 5.51358 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47580 * 51.35131 * 3 2 1 26 26 H 1.09009 * 109.47344 * 291.35266 * 3 2 1 27 27 H 0.96991 * 120.00153 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47389 * 150.00707 * 13 4 3 29 29 H 1.09001 * 109.47650 * 30.00145 * 13 4 3 30 30 H 0.97000 * 119.99762 * 0.02562 * 16 14 13 31 31 H 1.09009 * 109.46721 * 60.00030 * 17 16 14 32 32 H 1.08991 * 109.46815 * 300.00601 * 17 16 14 33 33 H 1.08994 * 109.47185 * 305.00371 * 18 17 16 34 34 H 1.09002 * 109.47052 * 299.99489 * 19 18 17 35 35 H 1.08993 * 109.47768 * 59.99691 * 19 18 17 36 36 H 1.09008 * 109.47153 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47185 * 59.99911 * 20 19 18 38 38 H 1.08994 * 109.47646 * 300.00303 * 21 20 19 39 39 H 1.09003 * 109.47154 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47305 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47194 * 59.99341 * 22 21 20 42 42 H 1.08993 * 109.47750 * 300.00356 * 23 22 21 43 43 H 1.09000 * 109.47308 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3664 -0.2076 5 6 3.4718 1.7889 -1.4656 6 1 4.0726 2.6771 -1.5935 7 6 3.0423 1.0755 -2.5761 8 7 1.9895 0.2905 -2.4872 9 14 3.9582 1.2295 -4.1968 10 1 5.3659 0.7940 -4.0131 11 1 3.3039 0.3733 -5.2185 12 1 3.9326 2.6444 -4.6473 13 6 3.2598 2.2801 0.9305 14 6 1.9698 3.0378 1.1117 15 8 1.0368 2.8343 0.3641 16 7 1.8524 3.9409 2.1052 17 6 0.5982 4.6771 2.2817 18 6 0.7294 5.6306 3.4711 19 6 1.7827 6.6950 3.1575 20 6 1.9135 7.6488 4.3467 21 6 0.5666 8.3257 4.6080 22 6 -0.4868 7.2613 4.9216 23 6 -0.6176 6.3075 3.7324 24 1 -1.0501 -0.0004 0.0003 25 1 3.0097 -0.6410 -0.8026 26 1 3.0096 -0.3734 0.9572 27 1 1.6895 -0.2083 -3.2631 28 1 4.0711 2.9837 0.7436 29 1 3.4753 1.7086 1.8333 30 1 2.5985 4.1035 2.7034 31 1 -0.2130 3.9733 2.4685 32 1 0.3825 5.2489 1.3792 33 1 1.0320 5.0692 4.3550 34 1 2.7423 6.2127 2.9709 35 1 1.4802 7.2563 2.2736 36 1 2.6643 8.4069 4.1235 37 1 2.2159 7.0878 5.2309 38 1 0.2642 8.8867 3.7238 39 1 0.6598 9.0056 5.4549 40 1 -1.4464 7.7436 5.1082 41 1 -0.1845 6.7003 5.8058 42 1 -0.9199 6.8684 2.8481 43 1 -1.3677 5.5489 3.9559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281327476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:37 Heat of formation + Delta-G solvation = 5.101290 kcal Electronic energy + Delta-G solvation = -21901.956958 eV Core-core repulsion = 18754.967008 eV Total energy + Delta-G solvation = -3146.989950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58841 -39.38305 -37.44610 -35.51383 -33.42549 -33.10490 -32.11541 -31.56531 -29.01247 -27.85757 -26.33332 -23.84218 -23.39988 -22.07650 -21.21413 -20.51175 -19.35658 -18.27806 -17.82417 -17.05645 -16.44599 -16.38222 -16.02985 -15.53088 -15.25381 -14.94675 -14.90244 -14.85478 -14.59469 -13.95678 -13.68345 -13.31290 -13.19497 -13.04990 -12.97211 -12.70161 -12.61618 -12.41327 -12.24862 -11.98979 -11.93523 -11.88413 -11.33217 -11.06300 -10.92011 -10.86864 -10.63932 -10.49945 -10.18401 -9.81359 -8.91291 -7.78344 -5.21133 1.49285 1.50840 1.58053 2.09240 2.38949 2.53476 2.60434 2.69759 3.34841 3.69786 3.80563 3.83848 3.87944 4.17172 4.23814 4.32660 4.36882 4.44089 4.57282 4.58646 4.65529 4.66379 4.73058 4.77702 4.80945 4.90299 4.97770 5.06142 5.18920 5.28355 5.29573 5.31599 5.33071 5.40632 5.46932 5.60704 5.64705 5.72339 5.76466 6.28036 6.87959 7.11928 7.50904 7.69175 7.87676 8.24587 9.22584 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.003837 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.577858 B = 7295.979987 C = 7785.365794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.111 4.111 3 C 0.268 3.732 4 N -0.574 5.574 5 C -0.270 4.270 6 H 0.078 0.922 7 C -0.048 4.048 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.301 1.301 12 H -0.285 1.285 13 C 0.123 3.877 14 C 0.463 3.537 15 O -0.561 6.561 16 N -0.726 5.726 17 C 0.130 3.870 18 C -0.082 4.082 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.114 4.114 24 H 0.202 0.798 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.243 0.757 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.410 0.590 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 12.825 18.107 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.114 4.114 3 C 0.143 3.857 4 N -0.292 5.292 5 C -0.400 4.400 6 H 0.096 0.904 7 C -0.244 4.244 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.228 1.228 12 H -0.212 1.212 13 C -0.008 4.008 14 C 0.247 3.753 15 O -0.437 6.437 16 N -0.383 5.383 17 C 0.005 3.995 18 C -0.101 4.101 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.152 4.152 24 H 0.219 0.781 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.247 0.753 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.768 12.560 17.402 21.475 hybrid contribution -0.380 0.117 -1.317 1.376 sum 0.388 12.677 16.085 20.484 Atomic orbital electron populations 1.24613 0.96166 1.04104 1.07825 1.24556 0.96011 0.96754 0.94069 1.17945 0.82394 0.86606 0.98774 1.44316 1.72909 1.08027 1.03907 1.19470 1.25589 1.11366 0.83555 0.90403 1.25661 0.96973 1.01050 1.00735 1.70375 1.22728 1.32761 1.29537 0.85399 0.78825 0.76858 0.79594 1.19428 1.22797 1.21177 1.21335 0.93049 0.93731 0.92649 1.23351 0.92536 0.79829 0.79556 1.90745 1.42203 1.65484 1.45242 1.46159 1.16594 1.41822 1.33735 1.21215 0.86739 0.93625 0.97923 1.21299 0.96950 0.95368 0.96493 1.21588 0.98469 0.96601 0.98495 1.21516 0.97403 0.98391 0.97953 1.21561 0.94997 0.97732 1.01568 1.21494 0.99409 0.96767 0.97429 1.21526 0.95889 0.98734 0.99099 0.78061 0.90910 0.90860 0.94748 0.88302 0.87556 0.75341 0.94298 0.94768 0.89391 0.91471 0.93227 0.91485 0.91068 0.92696 0.90978 0.91397 0.91259 0.92656 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.08 18.78 74.32 1.40 -14.68 16 2 C -0.11 -5.92 10.03 31.12 0.31 -5.61 16 3 C 0.27 13.11 5.45 84.57 0.46 13.57 16 4 N -0.57 -28.16 2.09 -716.91 -1.50 -29.66 16 5 C -0.27 -14.79 9.66 84.03 0.81 -13.98 16 6 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 7 C -0.05 -2.71 4.85 84.86 0.41 -2.30 16 8 N -0.91 -55.38 9.50 21.65 0.21 -55.17 16 9 Si 0.96 45.83 29.61 68.60 2.03 47.86 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 13 C 0.12 4.60 6.18 85.63 0.53 5.13 16 14 C 0.46 18.84 7.81 87.66 0.68 19.53 16 15 O -0.56 -30.23 14.43 -3.02 -0.04 -30.27 16 16 N -0.73 -21.20 5.28 -463.05 -2.45 -23.65 16 17 C 0.13 3.68 5.06 86.38 0.44 4.12 16 18 C -0.08 -1.56 2.23 -10.79 -0.02 -1.58 16 19 C -0.11 -1.96 5.08 30.59 0.16 -1.81 16 20 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 21 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 22 C -0.11 -1.54 5.92 30.60 0.18 -1.36 16 23 C -0.11 -2.02 5.20 30.60 0.16 -1.86 16 24 H 0.20 9.23 7.80 -4.41 -0.03 9.20 16 25 H 0.07 3.90 6.41 -2.39 -0.02 3.89 16 26 H 0.07 2.94 7.97 -2.38 -0.02 2.92 16 27 H 0.24 14.68 8.31 -92.71 -0.77 13.90 16 28 H 0.10 3.24 8.02 -2.39 -0.02 3.22 16 29 H 0.11 3.15 7.95 -2.39 -0.02 3.13 16 30 H 0.41 8.56 7.65 -92.71 -0.71 7.85 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.11 7.18 -2.39 -0.02 1.10 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.78 347.25 4.38 -71.40 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.26 Total: 23.05 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.88 Total: -3.56 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -3.74 Total: -108.48 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.04 Total: -30.27 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.78 4.38 -71.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281327476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.498 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds