Wall clock time and date at job start Tue Mar 31 2020 01:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46970 * 241.04872 * 3 2 1 5 5 C 1.36941 * 120.00348 * 264.35427 * 4 3 2 6 6 H 1.08000 * 120.00219 * 196.60333 * 5 4 3 7 7 C 1.38811 * 119.99920 * 16.59983 * 5 4 3 8 8 N 1.31617 * 119.99909 * 22.37942 * 7 5 4 9 9 Si 1.86798 * 120.00210 * 202.38033 * 7 5 4 10 10 H 1.48504 * 109.46813 * 60.00140 * 9 7 5 11 11 H 1.48498 * 109.47068 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47004 * 300.00391 * 9 7 5 13 13 C 1.46500 * 120.00082 * 84.35665 * 4 3 2 14 14 C 1.50700 * 109.47009 * 269.99715 * 13 4 3 15 15 O 1.21280 * 119.99974 * 0.02562 * 14 13 4 16 16 N 1.34781 * 119.99879 * 179.97438 * 14 13 4 17 17 C 1.46505 * 119.99679 * 179.97438 * 16 14 13 18 18 C 1.54061 * 108.88022 * 277.98085 * 17 16 14 19 19 C 1.54064 * 112.82186 * 197.50703 * 18 17 16 20 20 C 1.50483 * 112.49486 * 318.28629 * 19 18 17 21 21 C 1.54244 * 108.51737 * 94.15062 * 20 19 18 22 22 C 1.45548 * 112.40297 * 280.00683 * 21 20 19 23 23 C 1.50476 * 108.87469 * 155.00465 * 17 16 14 24 24 H 4.40635 * 5.51421 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47190 * 121.05713 * 3 2 1 26 26 H 1.08996 * 109.47595 * 1.04925 * 3 2 1 27 27 H 0.97005 * 120.00548 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47819 * 149.99633 * 13 4 3 29 29 H 1.09003 * 109.47338 * 29.99557 * 13 4 3 30 30 H 0.96990 * 120.00048 * 0.02562 * 16 14 13 31 31 H 1.09000 * 108.76709 * 36.49427 * 17 16 14 32 32 H 1.09001 * 108.81688 * 318.37066 * 18 17 16 33 33 H 1.09003 * 108.81281 * 76.75198 * 18 17 16 34 34 H 1.08995 * 108.88297 * 197.50769 * 19 18 17 35 35 H 1.09004 * 108.87381 * 79.05610 * 19 18 17 36 36 H 1.08994 * 109.62679 * 334.43880 * 20 19 18 37 37 H 1.08995 * 109.62589 * 213.85744 * 20 19 18 38 38 H 1.08991 * 108.89801 * 40.76533 * 21 20 19 39 39 H 1.09003 * 108.88840 * 159.35682 * 21 20 19 40 40 H 1.09004 * 108.89109 * 182.69632 * 22 21 20 41 41 H 1.09000 * 108.89615 * 301.18572 * 22 21 20 42 42 H 1.08996 * 109.62835 * 95.21931 * 23 17 16 43 43 H 1.09000 * 109.78619 * 334.73633 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6695 1.2086 5 6 3.4717 1.9960 1.1683 6 1 4.0727 2.4245 1.9566 7 6 3.0414 2.7899 0.1140 8 7 1.9885 2.4338 -0.5909 9 14 3.9567 4.3637 -0.3042 10 1 5.3644 4.0406 -0.6496 11 1 3.3024 5.0240 -1.4623 12 1 3.9313 5.2770 0.8664 13 6 3.2609 -0.0808 2.4605 14 6 1.9712 0.0118 3.2345 15 8 1.0378 0.6420 2.7845 16 7 1.8546 -0.6066 4.4264 17 6 0.6010 -0.5161 5.1791 18 6 0.5786 0.8164 5.9520 19 6 -0.4614 0.8307 7.0885 20 6 -1.7644 0.1953 6.6845 21 6 -1.7401 -1.2865 7.1120 22 6 -0.9927 -2.1200 6.1819 23 6 0.4914 -1.7106 6.0877 24 1 -1.0501 0.0001 -0.0003 25 1 3.0091 0.5310 -0.8804 26 1 3.0099 -1.0266 -0.0188 27 1 1.6880 2.9884 -1.3279 28 1 4.0723 0.3388 3.0551 29 1 3.4766 -1.1258 2.2376 30 1 2.6010 -1.1109 4.7861 31 1 -0.2319 -0.5301 4.4761 32 1 1.5666 0.9927 6.3774 33 1 0.3474 1.6227 5.2558 34 1 -0.6488 1.8634 7.3822 35 1 -0.0561 0.2906 7.9442 36 1 -1.8849 0.2626 5.6034 37 1 -2.5899 0.7059 7.1803 38 1 -1.2834 -1.3618 8.0988 39 1 -2.7646 -1.6543 7.1685 40 1 -1.0525 -3.1574 6.5112 41 1 -1.4448 -2.0387 5.1934 42 1 0.8635 -1.4520 7.0789 43 1 1.0743 -2.5375 5.6820 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281342418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:34 Heat of formation + Delta-G solvation = 37.422849 kcal Electronic energy + Delta-G solvation = -22511.353512 eV Core-core repulsion = 19365.765130 eV Total energy + Delta-G solvation = -3145.588382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.57537 -37.93325 -35.57179 -33.95562 -32.30944 -31.38745 -31.22372 -30.14153 -26.99521 -25.81157 -24.89157 -23.93048 -21.82290 -20.76794 -19.48917 -19.19918 -17.36469 -16.41220 -16.37685 -15.87522 -15.29569 -14.86716 -14.43322 -14.08999 -14.00044 -13.76356 -13.42816 -13.08050 -13.00408 -12.88688 -12.21400 -12.13683 -11.89817 -11.39719 -11.35724 -11.16329 -10.96397 -10.77709 -10.72412 -10.63675 -10.40061 -10.36846 -10.23575 -10.15052 -9.92933 -8.97736 -8.67545 -8.56826 -8.29805 -8.20672 -6.93168 -5.68678 -3.10664 3.42624 3.48431 3.49475 3.72203 3.85512 4.39637 4.57708 4.60114 4.69468 4.71456 4.93902 5.14904 5.18881 5.24046 5.35235 5.43771 5.44530 5.57589 5.70900 5.74405 5.84320 5.88099 5.99194 6.04351 6.05365 6.12393 6.13329 6.17375 6.22238 6.28808 6.32435 6.33771 6.53367 6.58728 6.78535 7.19137 7.30664 7.61528 7.79859 8.22030 8.38755 9.15263 9.30578 9.49896 9.82759 10.26853 11.33834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.004652 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.334334 B = 6017.757420 C = 6311.556527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.094 4.094 3 C 0.270 3.730 4 N -0.559 5.559 5 C -0.266 4.266 6 H 0.074 0.926 7 C 0.008 3.992 8 N -0.877 5.877 9 Si 0.901 3.099 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.127 3.873 14 C 0.464 3.536 15 O -0.493 6.493 16 N -0.751 5.751 17 C 0.149 3.851 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.122 4.122 24 H 0.183 0.817 25 H 0.097 0.903 26 H 0.034 0.966 27 H 0.253 0.747 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.388 0.612 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -9.865 14.053 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.097 4.097 3 C 0.145 3.855 4 N -0.276 5.276 5 C -0.395 4.395 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.004 4.004 14 C 0.248 3.752 15 O -0.364 6.364 16 N -0.407 5.407 17 C 0.044 3.956 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.160 4.160 24 H 0.200 0.800 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.220 0.780 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.779 -9.248 13.471 16.575 hybrid contribution 0.149 0.923 0.164 0.949 sum -2.629 -8.325 13.635 16.191 Atomic orbital electron populations 1.23930 0.95100 1.07451 1.04402 1.23931 0.94997 0.94168 0.96555 1.17863 0.83245 0.93212 0.91155 1.44191 1.72958 1.08281 1.02203 1.19109 1.26351 0.85551 1.08457 0.90820 1.24931 0.96120 0.97726 1.00421 1.70186 1.21029 1.38832 1.21849 0.86403 0.79561 0.83279 0.77722 1.20960 1.21736 1.21102 1.21057 0.93266 0.97064 0.89048 1.23322 0.93006 0.78556 0.80358 1.90749 1.39954 1.38271 1.67409 1.46769 1.15536 1.56469 1.21921 1.20607 0.88700 0.93318 0.92976 1.22300 0.98558 0.98477 0.97245 1.21286 0.95246 1.00457 0.98070 1.21388 0.97326 0.95136 1.02123 1.20491 1.00022 0.95521 0.99296 1.20430 0.95187 0.99204 1.00600 1.21638 0.96818 0.97520 1.00053 0.79982 0.88522 0.94815 0.93611 0.90684 0.91531 0.77963 0.90393 0.92360 0.91525 0.92524 0.92428 0.91209 0.92181 0.92339 0.92532 0.92288 0.91852 0.91440 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.39 18.78 29.55 0.56 -6.84 16 2 C -0.09 -2.46 10.03 -37.12 -0.37 -2.83 16 3 C 0.27 6.63 5.45 -6.83 -0.04 6.59 16 4 N -0.56 -13.89 2.09 -177.95 -0.37 -14.26 16 5 C -0.27 -7.29 9.66 -15.06 -0.15 -7.44 16 6 H 0.07 1.97 7.90 -52.49 -0.41 1.56 16 7 C 0.01 0.23 4.85 -17.43 -0.08 0.15 16 8 N -0.88 -26.00 9.49 55.49 0.53 -25.48 16 9 Si 0.90 21.98 29.61 -169.99 -5.03 16.94 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.13 2.53 6.18 -5.19 -0.03 2.50 16 14 C 0.46 9.54 7.72 -10.98 -0.08 9.46 16 15 O -0.49 -12.82 14.10 5.56 0.08 -12.74 16 16 N -0.75 -11.50 4.95 -54.49 -0.27 -11.77 16 17 C 0.15 2.14 1.94 -68.63 -0.13 2.00 16 18 C -0.13 -1.82 5.37 -25.62 -0.14 -1.96 16 19 C -0.11 -1.29 5.31 -27.43 -0.15 -1.43 16 20 C -0.12 -1.35 5.61 -27.34 -0.15 -1.50 16 21 C -0.12 -1.10 5.26 -29.59 -0.16 -1.26 16 22 C -0.12 -1.18 5.26 -29.60 -0.16 -1.33 16 23 C -0.12 -1.31 5.17 -27.35 -0.14 -1.45 16 24 H 0.18 4.10 7.80 -54.09 -0.42 3.67 16 25 H 0.10 2.55 6.41 -51.93 -0.33 2.22 16 26 H 0.03 0.71 7.97 -51.93 -0.41 0.29 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.08 1.35 8.02 -51.93 -0.42 0.94 16 29 H 0.07 1.11 7.95 -51.93 -0.41 0.70 16 30 H 0.39 4.61 8.48 -40.82 -0.35 4.26 16 31 H 0.08 1.36 6.08 -51.93 -0.32 1.05 16 32 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 36 H 0.07 0.91 6.98 -51.93 -0.36 0.55 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 42 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 43 H 0.07 0.69 7.86 -51.93 -0.41 0.29 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -33.76 339.32 -8.18 -41.94 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.00 Total: 5.58 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.22 Total: -5.33 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.11 Total: -51.51 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.76 -8.18 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.362 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds