Wall clock time and date at job start Tue Mar 31 2020 00:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46764 * 277.39358 * 3 2 1 5 5 C 1.36939 * 119.99601 * 261.99400 * 4 3 2 6 6 H 1.08005 * 119.99629 * 211.94851 * 5 4 3 7 7 C 1.38808 * 120.00334 * 31.95518 * 5 4 3 8 8 N 1.31616 * 119.99924 * 6.13600 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 186.13819 * 7 5 4 10 10 H 1.48497 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46994 * 120.00136 * 9 7 5 12 12 H 1.48500 * 109.47057 * 239.99628 * 9 7 5 13 13 C 1.46500 * 120.00000 * 82.00215 * 4 3 2 14 14 C 1.50699 * 109.47330 * 89.99421 * 13 4 3 15 15 O 1.21286 * 119.99972 * 4.78424 * 14 13 4 16 16 N 1.34775 * 119.99742 * 184.77813 * 14 13 4 17 17 C 1.46495 * 120.00222 * 8.56022 * 16 14 13 18 18 C 1.52999 * 109.47532 * 269.99789 * 17 16 14 19 19 C 1.53001 * 109.47425 * 174.99532 * 18 17 16 20 20 C 1.52991 * 109.47030 * 295.00032 * 18 17 16 21 21 C 1.46495 * 119.99810 * 188.55840 * 16 14 13 22 22 C 1.53005 * 117.49809 * 16.24547 * 21 16 14 23 23 C 1.52997 * 117.50422 * 307.62264 * 21 16 14 24 24 H 4.40639 * 5.51413 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46609 * 157.39701 * 3 2 1 26 26 H 1.08999 * 109.47455 * 37.39436 * 3 2 1 27 27 H 0.97000 * 120.00142 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46619 * 329.98950 * 13 4 3 29 29 H 1.09006 * 109.46623 * 209.99802 * 13 4 3 30 30 H 1.09002 * 109.47053 * 30.00239 * 17 16 14 31 31 H 1.09003 * 109.47346 * 149.99483 * 17 16 14 32 32 H 1.09004 * 109.46877 * 54.99959 * 18 17 16 33 33 H 1.09004 * 109.46745 * 60.00346 * 19 18 17 34 34 H 1.08999 * 109.47361 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47538 * 300.00616 * 19 18 17 36 36 H 1.08995 * 109.47401 * 299.99919 * 20 18 17 37 37 H 1.09005 * 109.47620 * 60.00138 * 20 18 17 38 38 H 1.09000 * 109.47326 * 179.97438 * 20 18 17 39 39 H 1.09003 * 115.55144 * 161.94724 * 21 16 14 40 40 H 1.08998 * 117.49960 * 359.97438 * 22 21 16 41 41 H 1.09003 * 117.49723 * 145.02330 * 22 21 16 42 42 H 1.09000 * 117.50263 * 214.98027 * 23 21 16 43 43 H 1.09010 * 117.49537 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.1769 1.3697 5 6 3.5177 0.9120 2.1064 6 1 4.3083 0.8188 2.8364 7 6 2.8904 2.1353 1.9150 8 7 1.8486 2.2227 1.1154 9 14 3.5246 3.6576 2.7924 10 1 4.6982 3.2951 3.6269 11 1 3.9270 4.6757 1.7889 12 1 2.4533 4.2124 3.6582 13 6 3.2126 -1.5192 1.9513 14 6 4.5660 -2.1147 1.6602 15 8 5.4147 -1.4492 1.1053 16 7 4.8333 -3.3867 2.0165 17 6 3.7587 -4.2493 2.5138 18 6 3.6589 -4.1146 4.0345 19 6 2.4587 -4.9176 4.5401 20 6 4.9389 -4.6502 4.6790 21 6 6.1984 -3.9067 1.9065 22 6 7.3315 -2.8900 1.7539 23 6 6.9083 -3.7488 0.5604 24 1 -1.0500 -0.0002 0.0000 25 1 3.0088 0.9496 -0.3950 26 1 3.0098 -0.8156 -0.6241 27 1 1.4100 3.0774 0.9819 28 1 2.4371 -2.1494 1.5161 29 1 3.0674 -1.4569 3.0298 30 1 2.8138 -3.9510 2.0597 31 1 3.9752 -5.2857 2.2543 32 1 3.5309 -3.0648 4.2986 33 1 2.5867 -5.9673 4.2760 34 1 2.3878 -4.8219 5.6236 35 1 1.5468 -4.5360 4.0809 36 1 5.0669 -5.6999 4.4150 37 1 5.7940 -4.0781 4.3190 38 1 4.8680 -4.5538 5.7625 39 1 6.4056 -4.8090 2.4819 40 1 7.0612 -1.8342 1.7349 41 1 8.2844 -3.1233 2.2289 42 1 7.5828 -4.5470 0.2503 43 1 6.3594 -3.2582 -0.2435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281344742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:04 Heat of formation + Delta-G solvation = 81.022753 kcal Electronic energy + Delta-G solvation = -22730.084663 eV Core-core repulsion = 19586.386915 eV Total energy + Delta-G solvation = -3143.697748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95760 -36.71267 -36.16113 -35.08869 -32.63579 -31.52730 -31.05627 -27.47449 -27.05856 -25.89082 -25.80321 -23.03962 -22.06739 -21.24173 -20.32620 -18.51979 -17.37948 -16.86804 -16.17280 -16.02408 -15.05296 -14.75134 -14.62879 -14.17809 -13.82556 -13.63439 -13.29269 -13.20282 -12.93193 -12.59711 -12.32669 -12.26788 -11.89118 -11.48442 -11.40259 -11.36431 -11.06062 -10.97861 -10.89822 -10.83085 -10.53438 -10.43695 -10.21076 -10.07903 -10.03160 -9.07913 -8.83075 -8.68201 -8.35067 -7.97448 -6.80136 -5.75198 -3.33090 3.27050 3.28262 3.38958 3.45986 3.49164 4.19001 4.22029 4.41988 4.55295 4.78634 4.89569 5.01217 5.07617 5.13116 5.33828 5.40832 5.44357 5.53514 5.57321 5.63258 5.70216 5.74127 5.80684 5.84811 5.90285 5.92832 5.98105 6.09405 6.18500 6.26438 6.28455 6.30851 6.43689 6.69398 6.78619 7.12807 7.26670 7.46461 7.81412 7.87476 8.37328 8.93445 9.13747 9.23599 9.74330 10.25321 11.27395 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.005790 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.138664 B = 4834.501831 C = 5159.869109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.090 4.090 3 C 0.273 3.727 4 N -0.560 5.560 5 C -0.259 4.259 6 H 0.067 0.933 7 C 0.012 3.988 8 N -0.890 5.890 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.290 1.290 13 C 0.135 3.865 14 C 0.483 3.517 15 O -0.512 6.512 16 N -0.598 5.598 17 C 0.122 3.878 18 C -0.120 4.120 19 C -0.145 4.145 20 C -0.146 4.146 21 C 0.073 3.927 22 C -0.193 4.193 23 C -0.191 4.191 24 H 0.190 0.810 25 H 0.092 0.908 26 H 0.032 0.968 27 H 0.255 0.745 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -15.645 3.688 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.093 4.093 3 C 0.148 3.852 4 N -0.278 5.278 5 C -0.389 4.389 6 H 0.085 0.915 7 C -0.188 4.188 8 N -0.533 5.533 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.003 3.997 14 C 0.270 3.730 15 O -0.386 6.386 16 N -0.332 5.332 17 C -0.002 4.002 18 C -0.139 4.139 19 C -0.202 4.202 20 C -0.204 4.204 21 C -0.032 4.032 22 C -0.230 4.230 23 C -0.230 4.230 24 H 0.207 0.793 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.816 -15.049 3.338 15.880 hybrid contribution 0.016 0.809 0.578 0.994 sum 3.833 -14.240 3.915 15.258 Atomic orbital electron populations 1.24117 0.95245 1.08148 1.04701 1.24168 0.95160 0.93895 0.96072 1.17620 0.82665 0.99551 0.85392 1.43459 1.73441 1.00250 1.10647 1.19111 1.13505 0.87751 1.18518 0.91489 1.25232 0.95690 0.98925 0.98950 1.69965 1.20371 1.24097 1.38827 0.86164 0.78071 0.83048 0.79118 1.20213 1.21525 1.21655 1.20801 0.90957 0.88559 0.99359 1.23203 0.92974 0.79643 0.77180 1.90490 1.47898 1.60436 1.39787 1.47717 1.06825 1.12466 1.66182 1.21596 0.90678 0.94614 0.93312 1.21625 0.95526 1.01247 0.95541 1.21775 0.97680 0.99678 1.01112 1.21878 0.97886 1.00386 1.00226 1.21604 0.82098 0.99261 1.00214 1.23731 0.96589 1.01558 1.01123 1.23209 1.03861 1.02790 0.93117 0.79321 0.88987 0.95038 0.93459 0.91783 0.90075 0.90051 0.90899 0.90276 0.92850 0.92581 0.92272 0.93146 0.92067 0.93003 0.86322 0.84597 0.90038 0.89541 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.89 19.25 29.55 0.57 -6.32 16 2 C -0.09 -2.21 11.25 -37.12 -0.42 -2.63 16 3 C 0.27 6.73 5.40 -6.83 -0.04 6.69 16 4 N -0.56 -13.98 1.96 -177.94 -0.35 -14.33 16 5 C -0.26 -7.13 9.56 -15.06 -0.14 -7.27 16 6 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 7 C 0.01 0.32 5.14 -17.43 -0.09 0.23 16 8 N -0.89 -25.46 9.35 55.49 0.52 -24.94 16 9 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.13 2.72 4.97 -5.19 -0.03 2.70 16 14 C 0.48 9.24 7.51 -10.99 -0.08 9.16 16 15 O -0.51 -11.58 12.17 5.55 0.07 -11.52 16 16 N -0.60 -8.83 2.66 -166.11 -0.44 -9.27 16 17 C 0.12 1.39 4.66 -4.05 -0.02 1.38 16 18 C -0.12 -1.29 3.10 -90.62 -0.28 -1.57 16 19 C -0.14 -1.29 9.19 37.16 0.34 -0.95 16 20 C -0.15 -1.46 8.37 37.15 0.31 -1.15 16 21 C 0.07 0.99 5.11 -67.93 -0.35 0.65 16 22 C -0.19 -2.92 9.62 -26.73 -0.26 -3.18 16 23 C -0.19 -2.71 9.87 -26.73 -0.26 -2.97 16 24 H 0.19 3.59 7.80 -54.09 -0.42 3.17 16 25 H 0.09 2.50 6.91 -51.93 -0.36 2.14 16 26 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.06 1.19 6.85 -51.93 -0.36 0.83 16 29 H 0.08 1.60 6.93 -51.93 -0.36 1.24 16 30 H 0.08 0.94 6.40 -51.93 -0.33 0.61 16 31 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.08 1.02 6.97 -51.93 -0.36 0.66 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.69 6.12 -51.93 -0.32 0.38 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 1.30 7.10 -51.93 -0.37 0.93 16 40 H 0.14 2.62 5.30 -51.95 -0.28 2.34 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.62 7.53 -51.92 -0.39 1.23 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -31.17 347.29 -7.63 -38.80 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.89 Total: 4.24 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.74 Total: -5.24 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.27 Total: -48.54 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.17 -7.63 -38.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281344742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.819 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds