Wall clock time and date at job start Tue Mar 31 2020 00:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46764 * 277.39358 * 3 2 1 5 5 C 1.36939 * 119.99601 * 261.99400 * 4 3 2 6 6 H 1.08005 * 119.99629 * 211.94851 * 5 4 3 7 7 C 1.38808 * 120.00334 * 31.95518 * 5 4 3 8 8 N 1.31616 * 119.99924 * 6.13600 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 186.13819 * 7 5 4 10 10 H 1.48497 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46994 * 120.00136 * 9 7 5 12 12 H 1.48500 * 109.47057 * 239.99628 * 9 7 5 13 13 C 1.46500 * 120.00000 * 82.00215 * 4 3 2 14 14 C 1.50699 * 109.47330 * 89.99421 * 13 4 3 15 15 O 1.21286 * 119.99972 * 4.78424 * 14 13 4 16 16 N 1.34775 * 119.99742 * 184.77813 * 14 13 4 17 17 C 1.46495 * 120.00222 * 8.56022 * 16 14 13 18 18 C 1.52999 * 109.47532 * 269.99789 * 17 16 14 19 19 C 1.53001 * 109.47425 * 174.99532 * 18 17 16 20 20 C 1.52991 * 109.47030 * 295.00032 * 18 17 16 21 21 C 1.46495 * 119.99810 * 188.55840 * 16 14 13 22 22 C 1.53005 * 117.49809 * 16.24547 * 21 16 14 23 23 C 1.52997 * 117.50422 * 307.62264 * 21 16 14 24 24 H 4.40639 * 5.51413 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46609 * 157.39701 * 3 2 1 26 26 H 1.08999 * 109.47455 * 37.39436 * 3 2 1 27 27 H 0.97000 * 120.00142 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.46619 * 329.98950 * 13 4 3 29 29 H 1.09006 * 109.46623 * 209.99802 * 13 4 3 30 30 H 1.09002 * 109.47053 * 30.00239 * 17 16 14 31 31 H 1.09003 * 109.47346 * 149.99483 * 17 16 14 32 32 H 1.09004 * 109.46877 * 54.99959 * 18 17 16 33 33 H 1.09004 * 109.46745 * 60.00346 * 19 18 17 34 34 H 1.08999 * 109.47361 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.47538 * 300.00616 * 19 18 17 36 36 H 1.08995 * 109.47401 * 299.99919 * 20 18 17 37 37 H 1.09005 * 109.47620 * 60.00138 * 20 18 17 38 38 H 1.09000 * 109.47326 * 179.97438 * 20 18 17 39 39 H 1.09003 * 115.55144 * 161.94724 * 21 16 14 40 40 H 1.08998 * 117.49960 * 359.97438 * 22 21 16 41 41 H 1.09003 * 117.49723 * 145.02330 * 22 21 16 42 42 H 1.09000 * 117.50263 * 214.98027 * 23 21 16 43 43 H 1.09010 * 117.49537 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.1769 1.3697 5 6 3.5177 0.9120 2.1064 6 1 4.3083 0.8188 2.8364 7 6 2.8904 2.1353 1.9150 8 7 1.8486 2.2227 1.1154 9 14 3.5246 3.6576 2.7924 10 1 4.6982 3.2951 3.6269 11 1 3.9270 4.6757 1.7889 12 1 2.4533 4.2124 3.6582 13 6 3.2126 -1.5192 1.9513 14 6 4.5660 -2.1147 1.6602 15 8 5.4147 -1.4492 1.1053 16 7 4.8333 -3.3867 2.0165 17 6 3.7587 -4.2493 2.5138 18 6 3.6589 -4.1146 4.0345 19 6 2.4587 -4.9176 4.5401 20 6 4.9389 -4.6502 4.6790 21 6 6.1984 -3.9067 1.9065 22 6 7.3315 -2.8900 1.7539 23 6 6.9083 -3.7488 0.5604 24 1 -1.0500 -0.0002 0.0000 25 1 3.0088 0.9496 -0.3950 26 1 3.0098 -0.8156 -0.6241 27 1 1.4100 3.0774 0.9819 28 1 2.4371 -2.1494 1.5161 29 1 3.0674 -1.4569 3.0298 30 1 2.8138 -3.9510 2.0597 31 1 3.9752 -5.2857 2.2543 32 1 3.5309 -3.0648 4.2986 33 1 2.5867 -5.9673 4.2760 34 1 2.3878 -4.8219 5.6236 35 1 1.5468 -4.5360 4.0809 36 1 5.0669 -5.6999 4.4150 37 1 5.7940 -4.0781 4.3190 38 1 4.8680 -4.5538 5.7625 39 1 6.4056 -4.8090 2.4819 40 1 7.0612 -1.8342 1.7349 41 1 8.2844 -3.1233 2.2289 42 1 7.5828 -4.5470 0.2503 43 1 6.3594 -3.2582 -0.2435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281344742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:03 Heat of formation + Delta-G solvation = 64.498142 kcal Electronic energy + Delta-G solvation = -22730.801224 eV Core-core repulsion = 19586.386915 eV Total energy + Delta-G solvation = -3144.414309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31440 -38.17063 -37.45815 -36.58739 -33.84350 -33.50430 -32.90317 -29.06535 -27.99264 -27.81848 -26.84735 -24.64995 -23.24485 -22.83882 -21.22009 -19.93637 -19.31649 -18.36218 -17.73680 -17.46851 -16.72217 -16.23260 -15.69360 -15.56032 -15.35082 -15.29578 -14.78873 -14.58205 -14.20178 -14.06287 -13.42322 -13.38607 -13.21704 -13.03347 -12.87024 -12.78493 -12.63008 -12.42864 -12.31419 -12.08915 -11.99714 -11.89542 -11.55852 -11.43642 -11.15848 -10.97094 -10.71729 -10.41267 -10.24445 -9.22777 -8.75945 -7.85241 -5.44757 1.42246 1.44713 1.54571 1.78259 2.02524 2.36768 2.50860 2.59783 3.05712 3.28717 3.70111 3.78903 4.00277 4.01404 4.06612 4.09711 4.17930 4.20823 4.32899 4.53399 4.57231 4.65813 4.76557 4.79423 4.84987 4.89410 4.92151 4.97450 5.10119 5.11526 5.15978 5.22331 5.36044 5.43971 5.49473 5.54847 5.61906 5.65680 5.93323 6.30452 6.55218 7.07196 7.37390 7.45444 7.74929 8.21208 9.14668 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.005790 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.138664 B = 4834.501831 C = 5159.869109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.132 4.132 3 C 0.281 3.719 4 N -0.577 5.577 5 C -0.266 4.266 6 H 0.053 0.947 7 C -0.034 4.034 8 N -0.909 5.909 9 Si 0.965 3.035 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.138 3.862 14 C 0.483 3.517 15 O -0.555 6.555 16 N -0.588 5.588 17 C 0.115 3.885 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.144 4.144 21 C 0.083 3.917 22 C -0.208 4.208 23 C -0.186 4.186 24 H 0.226 0.774 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.250 0.750 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -18.302 4.684 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.135 4.135 3 C 0.156 3.844 4 N -0.296 5.296 5 C -0.396 4.396 6 H 0.071 0.929 7 C -0.231 4.231 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.212 1.212 13 C 0.008 3.992 14 C 0.270 3.730 15 O -0.432 6.432 16 N -0.321 5.321 17 C -0.007 4.007 18 C -0.137 4.137 19 C -0.197 4.197 20 C -0.201 4.201 21 C -0.021 4.021 22 C -0.246 4.246 23 C -0.224 4.224 24 H 0.242 0.758 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.177 0.823 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.588 -17.775 4.359 18.651 hybrid contribution 0.092 1.542 0.271 1.568 sum 3.680 -16.234 4.630 17.278 Atomic orbital electron populations 1.24943 0.96143 1.06053 1.02838 1.24286 0.95640 0.95754 0.97840 1.17355 0.83395 0.98101 0.85553 1.43552 1.73926 1.01416 1.10717 1.19179 1.13049 0.89153 1.18255 0.92877 1.25852 0.96177 1.01185 0.99923 1.70126 1.21230 1.24074 1.39814 0.85261 0.77561 0.79872 0.77996 1.19975 1.21755 1.21238 1.20879 0.92321 0.86817 0.99224 1.22733 0.91912 0.81055 0.77307 1.90513 1.48708 1.62072 1.41936 1.47631 1.08505 1.11294 1.64638 1.21899 0.89509 0.95496 0.93762 1.21562 0.97113 1.00013 0.94980 1.21734 0.96417 1.00419 1.01178 1.21854 0.96483 1.01423 1.00315 1.21952 0.80527 0.99526 1.00117 1.23567 0.98574 0.99507 1.02953 1.23186 1.04103 1.03021 0.92116 0.75757 0.92508 0.93915 0.94062 0.89980 0.90043 0.90232 0.87591 0.93244 0.90822 0.92326 0.92673 0.90773 0.93620 0.92736 0.82260 0.89082 0.87446 0.86153 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.43 19.25 74.32 1.43 -11.00 16 2 C -0.13 -6.54 11.25 31.13 0.35 -6.19 16 3 C 0.28 14.38 5.40 84.58 0.46 14.84 16 4 N -0.58 -29.77 1.96 -716.89 -1.41 -31.18 16 5 C -0.27 -15.15 9.56 84.03 0.80 -14.35 16 6 H 0.05 3.10 7.84 -2.91 -0.02 3.08 16 7 C -0.03 -1.94 5.14 84.86 0.44 -1.50 16 8 N -0.91 -53.10 9.35 21.65 0.20 -52.90 16 9 Si 0.96 46.45 29.56 68.60 2.03 48.47 16 10 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 C 0.14 5.67 4.97 85.63 0.43 6.10 16 14 C 0.48 18.85 7.51 87.66 0.66 19.51 16 15 O -0.55 -26.30 12.17 -3.05 -0.04 -26.34 16 16 N -0.59 -16.70 2.66 -797.84 -2.13 -18.82 16 17 C 0.12 2.35 4.66 86.38 0.40 2.76 16 18 C -0.12 -2.27 3.10 -10.80 -0.03 -2.30 16 19 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 20 C -0.14 -2.43 8.37 71.98 0.60 -1.83 16 21 C 0.08 2.07 5.11 44.99 0.23 2.30 16 22 C -0.21 -6.22 9.62 30.60 0.29 -5.93 16 23 C -0.19 -5.02 9.87 30.59 0.30 -4.71 16 24 H 0.23 7.89 7.80 -4.42 -0.03 7.85 16 25 H 0.06 3.26 6.91 -2.38 -0.02 3.24 16 26 H 0.04 2.02 8.13 -2.39 -0.02 2.00 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.08 3.03 6.85 -2.39 -0.02 3.02 16 29 H 0.08 3.30 6.93 -2.38 -0.02 3.29 16 30 H 0.08 1.68 6.40 -2.39 -0.02 1.66 16 31 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.05 1.26 6.97 -2.38 -0.02 1.24 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.04 0.92 6.12 -2.38 -0.01 0.90 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.16 2.74 7.10 -2.39 -0.02 2.72 16 40 H 0.09 3.68 5.30 -2.73 -0.01 3.67 16 41 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.12 2.42 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.16 7.53 -2.38 -0.02 2.14 16 Total: -1.00 -70.40 347.29 6.65 -63.75 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.97 Total: 20.78 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 7.02 Total: -3.76 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.33 Total: -102.90 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.34 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.40 6.65 -63.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281344742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.247 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds