Wall clock time and date at job start Tue Mar 31 2020 00:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47137 * 104.55772 * 3 2 1 5 5 C 1.36936 * 119.99865 * 263.65743 * 4 3 2 6 6 H 1.07995 * 120.00228 * 211.03628 * 5 4 3 7 7 C 1.38814 * 119.99988 * 31.03015 * 5 4 3 8 8 N 1.31614 * 120.00219 * 353.63348 * 7 5 4 9 9 Si 1.86798 * 120.00005 * 173.62880 * 7 5 4 10 10 H 1.48500 * 109.46939 * 60.00313 * 9 7 5 11 11 H 1.48497 * 109.47528 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47353 * 300.00657 * 9 7 5 13 13 C 1.46493 * 119.99922 * 83.65159 * 4 3 2 14 14 C 1.50705 * 109.47189 * 90.00433 * 13 4 3 15 15 O 1.21281 * 119.99545 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00092 * 179.97438 * 14 13 4 17 17 C 1.46924 * 120.62952 * 354.67474 * 16 14 13 18 18 C 1.53196 * 108.77302 * 126.43539 * 17 16 14 19 19 C 1.53041 * 109.31237 * 54.63200 * 18 17 16 20 20 C 1.53037 * 109.54030 * 298.63235 * 19 18 17 21 21 C 1.46930 * 120.60156 * 174.69604 * 16 14 13 22 22 H 1.08995 * 109.56282 * 113.76562 * 21 16 14 23 23 C 1.53000 * 109.62029 * 353.33640 * 21 16 14 24 24 C 1.52999 * 109.47625 * 182.79484 * 23 21 16 25 25 H 4.40648 * 5.51462 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47423 * 344.55428 * 3 2 1 27 27 H 1.09001 * 109.46968 * 224.55116 * 3 2 1 28 28 H 0.97002 * 120.00340 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47698 * 330.00517 * 13 4 3 30 30 H 1.09006 * 109.47061 * 210.00261 * 13 4 3 31 31 H 1.08998 * 109.58716 * 6.64623 * 17 16 14 32 32 H 1.09003 * 109.58142 * 246.21690 * 17 16 14 33 33 H 1.09000 * 109.49622 * 294.67764 * 18 17 16 34 34 H 1.09000 * 109.49549 * 174.58267 * 18 17 16 35 35 H 1.09005 * 109.45509 * 178.61210 * 19 18 17 36 36 H 1.09002 * 109.44971 * 58.65132 * 19 18 17 37 37 H 1.09001 * 109.49676 * 181.31598 * 20 19 18 38 38 H 1.08996 * 109.49750 * 301.38409 * 20 19 18 39 39 H 1.09004 * 109.47100 * 302.80265 * 23 21 16 40 40 H 1.09004 * 109.46934 * 62.79639 * 23 21 16 41 41 H 1.08999 * 109.47180 * 305.18502 * 24 23 21 42 42 H 1.09007 * 109.46470 * 65.18375 * 24 23 21 43 43 H 1.09002 * 109.46968 * 185.17911 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.3481 -1.3369 5 6 3.4863 -0.6413 -2.2157 6 1 4.2664 -0.4662 -2.9417 7 6 2.8407 -1.8695 -2.1732 8 7 1.9802 -2.1277 -1.2114 9 14 3.1932 -3.1556 -3.4812 10 1 4.6357 -3.5075 -3.4534 11 1 2.3818 -4.3700 -3.2128 12 1 2.8422 -2.6117 -4.8177 13 6 3.2454 1.7539 -1.7336 14 6 4.6150 2.2703 -1.3747 15 8 5.4187 1.5363 -0.8397 16 7 4.9466 3.5477 -1.6482 17 6 4.0286 4.4150 -2.3991 18 6 3.7912 5.6962 -1.5935 19 6 5.1381 6.3431 -1.2629 20 6 5.9711 5.3837 -0.4098 21 6 6.2333 4.0985 -1.2012 22 1 6.8548 4.3235 -2.0679 23 6 6.9446 3.0814 -0.3066 24 6 8.2509 3.6849 0.2132 25 1 -1.0501 0.0002 0.0002 26 1 3.0098 -0.9897 0.2737 27 1 3.0089 0.7332 0.7210 28 1 1.5288 -2.9858 -1.1820 29 1 2.4882 2.3396 -1.2124 30 1 3.0949 1.8407 -2.8098 31 1 3.0810 3.8986 -2.5521 32 1 4.4702 4.6662 -3.3635 33 1 3.2676 5.4529 -0.6690 34 1 3.1893 6.3892 -2.1814 35 1 4.9709 7.2681 -0.7109 36 1 5.6716 6.5635 -2.1875 37 1 6.9207 5.8543 -0.1551 38 1 5.4273 5.1438 0.5039 39 1 6.3016 2.8262 0.5359 40 1 7.1635 2.1819 -0.8820 41 1 8.8546 4.0242 -0.6285 42 1 8.0270 4.5302 0.8640 43 1 8.8017 2.9301 0.7746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281514545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:15 Heat of formation + Delta-G solvation = 53.664428 kcal Electronic energy + Delta-G solvation = -22762.638303 eV Core-core repulsion = 19617.754209 eV Total energy + Delta-G solvation = -3144.884094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07981 -37.16872 -35.55918 -34.04630 -32.54457 -31.50078 -31.10548 -29.29399 -27.38935 -25.90700 -24.71782 -23.99393 -22.06677 -20.96419 -20.49253 -18.57089 -17.38401 -16.45908 -16.24939 -15.60511 -15.14439 -14.77568 -14.47025 -14.38957 -13.77853 -13.56338 -13.48535 -13.18722 -13.06035 -12.67838 -12.56028 -12.27655 -11.82378 -11.58443 -11.34352 -11.25875 -11.09522 -10.91856 -10.87820 -10.72624 -10.65360 -10.40736 -10.38347 -10.25368 -10.04350 -9.07928 -8.75769 -8.48328 -8.19809 -8.14265 -6.79668 -5.77078 -3.30308 3.36146 3.41091 3.42426 3.45552 3.47740 4.20967 4.42490 4.56236 4.72508 4.80169 4.84514 5.07192 5.20643 5.33633 5.37930 5.43061 5.53817 5.57772 5.59721 5.71132 5.75001 5.76561 5.87347 5.89592 5.91275 5.95133 6.01886 6.09663 6.16986 6.27216 6.28095 6.30968 6.60172 6.75163 6.83659 7.10627 7.40799 7.53696 7.81444 7.94721 8.38844 8.99379 9.16323 9.23431 9.75942 10.26347 11.26763 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005263 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.943516 B = 5318.751655 C = 5816.619376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.084 4.084 3 C 0.270 3.730 4 N -0.563 5.563 5 C -0.260 4.260 6 H 0.068 0.932 7 C 0.014 3.986 8 N -0.894 5.894 9 Si 0.907 3.093 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.133 3.867 14 C 0.483 3.517 15 O -0.513 6.513 16 N -0.624 5.624 17 C 0.111 3.889 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.131 4.131 21 C 0.148 3.852 22 H 0.060 0.940 23 C -0.113 4.113 24 C -0.158 4.158 25 H 0.189 0.811 26 H 0.105 0.895 27 H 0.028 0.972 28 H 0.256 0.744 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 16.469 0.201 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 C -0.087 4.087 3 C 0.146 3.854 4 N -0.281 5.281 5 C -0.389 4.389 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.536 5.536 9 Si 0.736 3.264 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.001 3.999 14 C 0.269 3.731 15 O -0.387 6.387 16 N -0.361 5.361 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.170 4.170 21 C 0.044 3.956 22 H 0.078 0.922 23 C -0.151 4.151 24 C -0.216 4.216 25 H 0.207 0.793 26 H 0.123 0.877 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.308 15.809 0.521 16.684 hybrid contribution -0.186 -0.605 -0.809 1.027 sum 5.121 15.204 -0.288 16.045 Atomic orbital electron populations 1.24153 0.95299 1.08532 1.05331 1.24331 0.95259 0.93595 0.95548 1.17775 0.82377 1.00223 0.85066 1.43481 1.73889 0.98941 1.11760 1.19044 1.14552 0.93020 1.12330 0.91422 1.25222 0.96569 0.98903 0.97851 1.69930 1.29335 1.22992 1.31372 0.86316 0.77604 0.80721 0.81770 1.20886 1.21599 1.20942 1.20772 0.91095 0.87968 1.00040 1.23095 0.92246 0.79973 0.77740 1.90647 1.50540 1.55995 1.41560 1.48521 1.18256 1.11985 1.57385 1.21637 0.94337 0.91145 0.94153 1.21931 0.97475 0.96990 1.01035 1.21504 0.96087 0.98053 0.99941 1.22036 1.00139 0.95764 0.99026 1.21204 0.84819 0.93256 0.96273 0.92234 1.22046 0.94967 0.98032 1.00013 1.21993 0.98503 1.00570 1.00534 0.79330 0.87693 0.95436 0.93283 0.91579 0.90479 0.89393 0.92016 0.91436 0.91093 0.92121 0.92078 0.91190 0.91669 0.91286 0.88841 0.93414 0.93351 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.21 19.25 29.55 0.57 -6.64 16 2 C -0.08 -2.09 11.44 -37.12 -0.42 -2.52 16 3 C 0.27 6.76 5.40 -6.83 -0.04 6.72 16 4 N -0.56 -14.13 1.98 -177.95 -0.35 -14.48 16 5 C -0.26 -7.17 9.59 -15.06 -0.14 -7.31 16 6 H 0.07 1.88 7.84 -52.49 -0.41 1.46 16 7 C 0.01 0.38 5.36 -17.43 -0.09 0.29 16 8 N -0.89 -25.57 8.88 55.49 0.49 -25.07 16 9 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.13 2.69 4.51 -5.19 -0.02 2.67 16 14 C 0.48 9.32 7.60 -10.98 -0.08 9.24 16 15 O -0.51 -11.65 11.98 5.56 0.07 -11.59 16 16 N -0.62 -9.38 2.97 -165.21 -0.49 -9.87 16 17 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 18 C -0.14 -1.32 6.08 -26.61 -0.16 -1.48 16 19 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 20 C -0.13 -1.43 4.78 -26.61 -0.13 -1.56 16 21 C 0.15 2.00 3.04 -67.59 -0.21 1.80 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.11 -1.73 3.90 -26.73 -0.10 -1.84 16 24 C -0.16 -1.90 9.35 37.16 0.35 -1.56 16 25 H 0.19 3.62 7.80 -54.08 -0.42 3.19 16 26 H 0.11 2.91 6.55 -51.93 -0.34 2.57 16 27 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 30 H 0.08 1.49 7.62 -51.93 -0.40 1.09 16 31 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.67 6.85 -51.93 -0.36 0.32 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.22 7.17 -51.93 -0.37 0.84 16 40 H 0.09 1.73 6.32 -51.93 -0.33 1.40 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.52 6.83 -51.93 -0.35 0.16 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -31.13 339.68 -7.91 -39.05 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.06 Total: 2.05 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.67 Total: -2.17 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.35 Total: -49.43 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.13 -7.91 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.710 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds