Wall clock time and date at job start Tue Mar 31 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47137 * 104.55772 * 3 2 1 5 5 C 1.36936 * 119.99865 * 263.65743 * 4 3 2 6 6 H 1.07995 * 120.00228 * 211.03628 * 5 4 3 7 7 C 1.38814 * 119.99988 * 31.03015 * 5 4 3 8 8 N 1.31614 * 120.00219 * 353.63348 * 7 5 4 9 9 Si 1.86798 * 120.00005 * 173.62880 * 7 5 4 10 10 H 1.48500 * 109.46939 * 60.00313 * 9 7 5 11 11 H 1.48497 * 109.47528 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47353 * 300.00657 * 9 7 5 13 13 C 1.46493 * 119.99922 * 83.65159 * 4 3 2 14 14 C 1.50705 * 109.47189 * 90.00433 * 13 4 3 15 15 O 1.21281 * 119.99545 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00092 * 179.97438 * 14 13 4 17 17 C 1.46924 * 120.62952 * 354.67474 * 16 14 13 18 18 C 1.53196 * 108.77302 * 126.43539 * 17 16 14 19 19 C 1.53041 * 109.31237 * 54.63200 * 18 17 16 20 20 C 1.53037 * 109.54030 * 298.63235 * 19 18 17 21 21 C 1.46930 * 120.60156 * 174.69604 * 16 14 13 22 22 H 1.08995 * 109.56282 * 113.76562 * 21 16 14 23 23 C 1.53000 * 109.62029 * 353.33640 * 21 16 14 24 24 C 1.52999 * 109.47625 * 182.79484 * 23 21 16 25 25 H 4.40648 * 5.51462 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47423 * 344.55428 * 3 2 1 27 27 H 1.09001 * 109.46968 * 224.55116 * 3 2 1 28 28 H 0.97002 * 120.00340 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47698 * 330.00517 * 13 4 3 30 30 H 1.09006 * 109.47061 * 210.00261 * 13 4 3 31 31 H 1.08998 * 109.58716 * 6.64623 * 17 16 14 32 32 H 1.09003 * 109.58142 * 246.21690 * 17 16 14 33 33 H 1.09000 * 109.49622 * 294.67764 * 18 17 16 34 34 H 1.09000 * 109.49549 * 174.58267 * 18 17 16 35 35 H 1.09005 * 109.45509 * 178.61210 * 19 18 17 36 36 H 1.09002 * 109.44971 * 58.65132 * 19 18 17 37 37 H 1.09001 * 109.49676 * 181.31598 * 20 19 18 38 38 H 1.08996 * 109.49750 * 301.38409 * 20 19 18 39 39 H 1.09004 * 109.47100 * 302.80265 * 23 21 16 40 40 H 1.09004 * 109.46934 * 62.79639 * 23 21 16 41 41 H 1.08999 * 109.47180 * 305.18502 * 24 23 21 42 42 H 1.09007 * 109.46470 * 65.18375 * 24 23 21 43 43 H 1.09002 * 109.46968 * 185.17911 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.3481 -1.3369 5 6 3.4863 -0.6413 -2.2157 6 1 4.2664 -0.4662 -2.9417 7 6 2.8407 -1.8695 -2.1732 8 7 1.9802 -2.1277 -1.2114 9 14 3.1932 -3.1556 -3.4812 10 1 4.6357 -3.5075 -3.4534 11 1 2.3818 -4.3700 -3.2128 12 1 2.8422 -2.6117 -4.8177 13 6 3.2454 1.7539 -1.7336 14 6 4.6150 2.2703 -1.3747 15 8 5.4187 1.5363 -0.8397 16 7 4.9466 3.5477 -1.6482 17 6 4.0286 4.4150 -2.3991 18 6 3.7912 5.6962 -1.5935 19 6 5.1381 6.3431 -1.2629 20 6 5.9711 5.3837 -0.4098 21 6 6.2333 4.0985 -1.2012 22 1 6.8548 4.3235 -2.0679 23 6 6.9446 3.0814 -0.3066 24 6 8.2509 3.6849 0.2132 25 1 -1.0501 0.0002 0.0002 26 1 3.0098 -0.9897 0.2737 27 1 3.0089 0.7332 0.7210 28 1 1.5288 -2.9858 -1.1820 29 1 2.4882 2.3396 -1.2124 30 1 3.0949 1.8407 -2.8098 31 1 3.0810 3.8986 -2.5521 32 1 4.4702 4.6662 -3.3635 33 1 3.2676 5.4529 -0.6690 34 1 3.1893 6.3892 -2.1814 35 1 4.9709 7.2681 -0.7109 36 1 5.6716 6.5635 -2.1875 37 1 6.9207 5.8543 -0.1551 38 1 5.4273 5.1438 0.5039 39 1 6.3016 2.8262 0.5359 40 1 7.1635 2.1819 -0.8820 41 1 8.8546 4.0242 -0.6285 42 1 8.0270 4.5302 0.8640 43 1 8.8017 2.9301 0.7746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281514545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:14 Heat of formation + Delta-G solvation = 36.736791 kcal Electronic energy + Delta-G solvation = -22763.372340 eV Core-core repulsion = 19617.754209 eV Total energy + Delta-G solvation = -3145.618131 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.37603 -38.54717 -37.32883 -35.20654 -33.67349 -33.48771 -32.95479 -30.28018 -29.04981 -27.90252 -25.94626 -25.00156 -23.81663 -22.02543 -21.66769 -19.90197 -19.30517 -18.24381 -17.65061 -17.08880 -16.72654 -16.30298 -15.60377 -15.49497 -15.29886 -15.07473 -14.91576 -14.50291 -14.32224 -14.10714 -13.86206 -13.46947 -13.28216 -13.13985 -12.92693 -12.82526 -12.60060 -12.48626 -12.29604 -12.05699 -11.97152 -11.76720 -11.65578 -11.46966 -11.33118 -11.02077 -10.70195 -10.26826 -9.93844 -9.37105 -8.73547 -7.86402 -5.41225 1.45680 1.47415 1.53865 1.90103 2.11050 2.38671 2.50625 2.60413 3.29122 3.69150 3.80656 3.91233 3.98277 4.08773 4.13394 4.23411 4.33632 4.34106 4.47021 4.53260 4.58558 4.64716 4.70631 4.77393 4.89277 4.94221 4.95852 5.03801 5.14522 5.18164 5.23908 5.28734 5.36887 5.37077 5.52449 5.53957 5.62901 5.67853 5.91561 6.32088 6.61883 7.09856 7.35008 7.51088 7.77580 8.23128 9.14994 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.005263 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.943516 B = 5318.751655 C = 5816.619376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.128 4.128 3 C 0.279 3.721 4 N -0.580 5.580 5 C -0.269 4.269 6 H 0.058 0.942 7 C -0.034 4.034 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.275 1.275 13 C 0.135 3.865 14 C 0.481 3.519 15 O -0.558 6.558 16 N -0.617 5.617 17 C 0.101 3.899 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.124 4.124 21 C 0.144 3.856 22 H 0.073 0.927 23 C -0.107 4.107 24 C -0.149 4.149 25 H 0.227 0.773 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.250 0.750 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.739 19.152 -0.865 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.130 4.130 3 C 0.154 3.846 4 N -0.299 5.299 5 C -0.399 4.399 6 H 0.076 0.924 7 C -0.231 4.231 8 N -0.557 5.557 9 Si 0.795 3.205 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 C 0.005 3.995 14 C 0.268 3.732 15 O -0.436 6.436 16 N -0.353 5.353 17 C -0.021 4.021 18 C -0.169 4.169 19 C -0.152 4.152 20 C -0.163 4.163 21 C 0.041 3.959 22 H 0.091 0.909 23 C -0.144 4.144 24 C -0.207 4.207 25 H 0.243 0.757 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.089 18.574 -0.566 19.267 hybrid contribution -0.095 -1.352 -0.462 1.431 sum 4.994 17.222 -1.028 17.961 Atomic orbital electron populations 1.24989 0.96201 1.06367 1.03431 1.24433 0.95734 0.95509 0.97356 1.17452 0.83172 0.98414 0.85526 1.43591 1.74372 1.00464 1.11467 1.19182 1.14289 0.94149 1.12270 0.92384 1.25884 0.96908 1.00695 0.99627 1.70123 1.30225 1.22884 1.32421 0.85368 0.77076 0.78317 0.79725 1.21019 1.21708 1.20025 1.20886 0.92224 0.85781 1.00648 1.22696 0.91453 0.81300 0.77726 1.90662 1.51454 1.57728 1.43788 1.48476 1.19382 1.10939 1.56458 1.21960 0.93685 0.91495 0.94969 1.21917 0.98257 0.96243 1.00515 1.21517 0.95311 0.98022 1.00383 1.21988 1.01470 0.94597 0.98209 1.21370 0.83924 0.93783 0.96777 0.90883 1.21799 0.96391 0.97521 0.98735 1.21903 0.96609 1.00843 1.01325 0.75669 0.91337 0.94716 0.94038 0.89991 0.89640 0.89564 0.90056 0.92658 0.88396 0.90236 0.90747 0.89159 0.93191 0.94500 0.92824 0.91718 0.91426 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.01 19.25 74.32 1.43 -11.58 16 2 C -0.13 -6.38 11.44 31.12 0.36 -6.03 16 3 C 0.28 14.56 5.40 84.57 0.46 15.02 16 4 N -0.58 -30.04 1.98 -716.90 -1.42 -31.46 16 5 C -0.27 -15.25 9.59 84.03 0.81 -14.45 16 6 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16 7 C -0.03 -1.95 5.36 84.86 0.45 -1.50 16 8 N -0.91 -53.47 8.88 21.65 0.19 -53.27 16 9 Si 0.97 46.03 29.56 68.60 2.03 48.06 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.13 5.54 4.51 85.64 0.39 5.93 16 14 C 0.48 19.08 7.60 87.66 0.67 19.74 16 15 O -0.56 -26.80 11.98 -3.03 -0.04 -26.83 16 16 N -0.62 -18.15 2.97 -795.00 -2.36 -20.52 16 17 C 0.10 2.12 6.35 86.36 0.55 2.67 16 18 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 19 C -0.11 -1.67 5.88 30.62 0.18 -1.49 16 20 C -0.12 -2.40 4.78 30.67 0.15 -2.25 16 21 C 0.14 3.73 3.04 44.98 0.14 3.87 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 C -0.11 -3.36 3.90 30.59 0.12 -3.24 16 24 C -0.15 -3.43 9.35 71.98 0.67 -2.76 16 25 H 0.23 7.97 7.80 -4.41 -0.03 7.94 16 26 H 0.07 4.03 6.55 -2.39 -0.02 4.01 16 27 H 0.03 1.70 8.12 -2.39 -0.02 1.68 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.08 3.05 7.84 -2.39 -0.02 3.03 16 30 H 0.09 3.31 7.62 -2.38 -0.02 3.29 16 31 H 0.09 1.84 5.93 -2.39 -0.01 1.83 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.40 6.85 -2.39 -0.02 1.39 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.37 7.17 -2.38 -0.02 1.35 16 40 H 0.05 2.11 6.32 -2.38 -0.02 2.09 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.30 6.83 -2.38 -0.02 1.28 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.21 339.68 5.92 -64.29 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.97 Total: 17.74 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 6.55 Total: 2.00 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.59 Total: -105.25 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.04 Total: -26.83 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -70.21 5.92 -64.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.025 kcal (2) G-P(sol) polarization free energy of solvation -70.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds