Wall clock time and date at job start Tue Mar 31 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47340 * 299.90460 * 3 2 1 5 5 C 1.36934 * 119.99873 * 96.84936 * 4 3 2 6 6 H 1.08004 * 119.99624 * 155.89786 * 5 4 3 7 7 C 1.38807 * 120.00386 * 335.89768 * 5 4 3 8 8 N 1.31621 * 119.99924 * 351.02815 * 7 5 4 9 9 Si 1.86801 * 120.00134 * 171.02759 * 7 5 4 10 10 H 1.48501 * 109.47218 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46927 * 299.99654 * 9 7 5 12 12 H 1.48493 * 109.47223 * 60.00331 * 9 7 5 13 13 C 1.46495 * 119.99639 * 276.85603 * 4 3 2 14 14 C 1.50705 * 109.47046 * 269.99377 * 13 4 3 15 15 O 1.21289 * 119.99578 * 0.02562 * 14 13 4 16 16 N 1.34775 * 119.99982 * 180.02562 * 14 13 4 17 17 C 1.46918 * 120.63070 * 354.57914 * 16 14 13 18 18 C 1.52764 * 109.00759 * 233.58084 * 17 16 14 19 19 C 1.53041 * 109.38396 * 305.58935 * 18 17 16 20 20 C 1.53048 * 109.53661 * 61.23628 * 19 18 17 21 21 C 1.46929 * 120.62767 * 174.85471 * 16 14 13 22 22 H 1.08998 * 109.58888 * 246.16105 * 21 16 14 23 23 C 1.53004 * 109.58509 * 6.44030 * 21 16 14 24 24 C 1.53002 * 109.46734 * 181.39062 * 23 21 16 25 25 H 4.40650 * 5.51387 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47371 * 179.90222 * 3 2 1 27 27 H 1.09001 * 109.46943 * 59.90239 * 3 2 1 28 28 H 0.97010 * 120.00186 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47508 * 29.99641 * 13 4 3 30 30 H 1.09001 * 109.46934 * 149.99826 * 13 4 3 31 31 H 1.09002 * 109.59065 * 353.41259 * 17 16 14 32 32 H 1.09003 * 109.58834 * 113.84732 * 17 16 14 33 33 H 1.09000 * 109.56829 * 185.55375 * 18 17 16 34 34 H 1.09003 * 109.38605 * 65.51016 * 18 17 16 35 35 H 1.09003 * 109.46344 * 301.21996 * 19 18 17 36 36 H 1.09001 * 109.45047 * 181.25006 * 19 18 17 37 37 H 1.09002 * 109.49587 * 178.68322 * 20 19 18 38 38 H 1.09002 * 109.52154 * 58.60718 * 20 19 18 39 39 H 1.09001 * 109.47347 * 301.38964 * 23 21 16 40 40 H 1.08997 * 109.47096 * 61.39493 * 23 21 16 41 41 H 1.09007 * 109.47074 * 184.15764 * 24 23 21 42 42 H 1.08992 * 109.47583 * 304.16111 * 24 23 21 43 43 H 1.09004 * 109.47133 * 64.15942 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.6878 1.1974 5 6 3.4968 -2.0066 1.1290 6 1 4.1956 -2.4124 1.8455 7 6 2.9659 -2.8218 0.1389 8 7 1.9866 -2.3806 -0.6218 9 14 3.6412 -4.5450 -0.1138 10 1 2.9099 -5.2052 -1.2250 11 1 5.0854 -4.4662 -0.4503 12 1 3.4654 -5.3333 1.1323 13 6 3.2357 0.0348 2.4677 14 6 4.6002 0.6645 2.5803 15 8 5.4085 0.5239 1.6869 16 7 4.9223 1.3839 3.6735 17 6 3.9178 1.6628 4.7087 18 6 3.8630 3.1693 4.9557 19 6 5.2667 3.6811 5.2873 20 6 6.2004 3.4175 4.1037 21 6 6.2832 1.9091 3.8498 22 1 6.7559 1.4205 4.7018 23 6 7.1034 1.6429 2.5859 24 6 8.5295 2.1599 2.7853 25 1 -1.0500 0.0001 0.0002 26 1 3.0088 1.0284 -0.0018 27 1 3.0095 -0.5145 -0.8891 28 1 1.6157 -2.9501 -1.3140 29 1 2.4726 0.8122 2.5053 30 1 3.0872 -0.6605 3.2939 31 1 2.9412 1.3131 4.3740 32 1 4.1938 1.1538 5.6323 33 1 3.1931 3.3784 5.7898 34 1 3.4956 3.6698 4.0597 35 1 5.6433 3.1629 6.1692 36 1 5.2251 4.7522 5.4855 37 1 7.1941 3.8032 4.3313 38 1 5.8117 3.9152 3.2152 39 1 7.1296 0.5712 2.3887 40 1 6.6455 2.1568 1.7407 41 1 9.0930 2.0374 1.8602 42 1 8.4991 3.2154 3.0552 43 1 9.0127 1.5949 3.5825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281514548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:18 Heat of formation + Delta-G solvation = 55.582271 kcal Electronic energy + Delta-G solvation = -22758.973460 eV Core-core repulsion = 19614.172530 eV Total energy + Delta-G solvation = -3144.800930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09421 -37.17874 -35.58682 -34.04218 -32.56065 -31.49866 -31.09028 -29.32938 -27.39167 -25.91874 -24.73193 -23.96664 -22.07490 -20.96292 -20.53019 -18.56215 -17.41836 -16.42237 -16.20312 -15.61251 -15.17146 -14.83909 -14.49283 -14.41734 -13.75664 -13.57195 -13.46983 -13.15656 -13.06977 -12.73224 -12.52536 -12.28190 -11.85191 -11.58041 -11.38787 -11.27014 -11.07935 -10.94518 -10.87159 -10.72180 -10.61191 -10.39768 -10.34727 -10.22884 -10.00657 -9.00527 -8.82513 -8.50306 -8.25271 -8.11365 -6.87233 -5.72630 -3.23433 3.35362 3.40527 3.43826 3.46661 3.49134 4.20668 4.42989 4.56805 4.71666 4.79962 4.83530 5.07477 5.21346 5.33349 5.39451 5.43340 5.54519 5.58503 5.58932 5.69205 5.72910 5.77403 5.86636 5.89221 5.92574 5.94939 6.01573 6.09677 6.15769 6.27546 6.28371 6.30455 6.62629 6.75208 6.81306 7.11071 7.36867 7.50249 7.78282 7.94101 8.34515 8.98552 9.15388 9.23435 9.77492 10.24138 11.30421 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.005454 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.986080 B = 5132.837986 C = 5934.539868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.087 4.087 3 C 0.272 3.728 4 N -0.562 5.562 5 C -0.255 4.255 6 H 0.069 0.931 7 C 0.006 3.994 8 N -0.897 5.897 9 Si 0.909 3.091 10 H -0.290 1.290 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.133 3.867 14 C 0.482 3.518 15 O -0.512 6.512 16 N -0.623 5.623 17 C 0.111 3.889 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.132 4.132 21 C 0.148 3.852 22 H 0.060 0.940 23 C -0.111 4.111 24 C -0.160 4.160 25 H 0.190 0.810 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.255 0.745 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 11.876 11.436 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.090 4.090 3 C 0.147 3.853 4 N -0.280 5.280 5 C -0.384 4.384 6 H 0.087 0.913 7 C -0.193 4.193 8 N -0.541 5.541 9 Si 0.739 3.261 10 H -0.216 1.216 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.001 3.999 14 C 0.269 3.731 15 O -0.386 6.386 16 N -0.361 5.361 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.170 4.170 21 C 0.044 3.956 22 H 0.078 0.922 23 C -0.148 4.148 24 C -0.218 4.218 25 H 0.207 0.793 26 H 0.049 0.951 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.535 11.627 10.747 16.773 hybrid contribution -0.002 -0.946 0.008 0.946 sum 5.533 10.681 10.755 16.136 Atomic orbital electron populations 1.24149 0.95288 1.08526 1.04857 1.24286 0.95224 0.93356 0.96139 1.17724 0.82453 0.93123 0.92018 1.43516 1.73586 1.08256 1.02632 1.19082 1.20173 0.84418 1.14694 0.91328 1.25035 0.96550 0.98100 0.99599 1.69981 1.25180 1.36152 1.22786 0.86266 0.78438 0.84022 0.77360 1.21629 1.20946 1.21009 1.20754 0.91294 0.96170 0.91694 1.23088 0.92433 0.77221 0.80381 1.90664 1.50179 1.59048 1.38731 1.48504 1.10408 1.54896 1.22276 1.21539 0.92862 0.95308 0.91543 1.21855 0.97258 0.96313 1.02004 1.21503 0.95314 1.00611 0.98136 1.22043 0.99640 0.96664 0.98680 1.21214 0.83044 0.92762 0.98579 0.92187 1.22068 0.92634 1.04009 0.96106 1.22024 0.98190 1.00408 1.01190 0.79299 0.95121 0.88006 0.93407 0.91623 0.90436 0.89455 0.92042 0.91033 0.91501 0.92055 0.92126 0.91210 0.91656 0.89152 0.90953 0.92860 0.93285 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.08 19.25 29.55 0.57 -6.51 16 2 C -0.09 -2.16 11.47 -37.12 -0.43 -2.58 16 3 C 0.27 6.78 5.40 -6.83 -0.04 6.74 16 4 N -0.56 -14.09 1.98 -177.95 -0.35 -14.45 16 5 C -0.25 -7.01 9.66 -15.06 -0.15 -7.15 16 6 H 0.07 1.89 7.84 -52.48 -0.41 1.48 16 7 C 0.01 0.16 5.12 -17.43 -0.09 0.07 16 8 N -0.90 -25.78 9.09 55.49 0.50 -25.28 16 9 Si 0.91 22.19 29.56 -169.99 -5.03 17.16 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.68 4.56 -5.19 -0.02 2.65 16 14 C 0.48 9.27 7.68 -10.98 -0.08 9.18 16 15 O -0.51 -11.57 11.84 5.55 0.07 -11.51 16 16 N -0.62 -9.33 2.98 -165.48 -0.49 -9.83 16 17 C 0.11 1.28 6.30 -3.94 -0.02 1.26 16 18 C -0.14 -1.32 6.06 -26.83 -0.16 -1.48 16 19 C -0.12 -1.09 5.89 -26.69 -0.16 -1.25 16 20 C -0.13 -1.45 4.92 -26.61 -0.13 -1.58 16 21 C 0.15 2.00 2.99 -67.60 -0.20 1.79 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 C -0.11 -1.71 3.85 -26.73 -0.10 -1.81 16 24 C -0.16 -1.95 9.72 37.16 0.36 -1.59 16 25 H 0.19 3.61 7.80 -54.09 -0.42 3.19 16 26 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.10 2.81 6.47 -51.93 -0.34 2.48 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.21 7.40 -51.93 -0.38 0.83 16 30 H 0.08 1.50 8.02 -51.93 -0.42 1.09 16 31 H 0.09 1.00 5.96 -51.93 -0.31 0.69 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.67 6.71 -51.93 -0.35 0.32 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.69 6.34 -51.93 -0.33 1.36 16 40 H 0.07 1.27 7.13 -51.93 -0.37 0.90 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.52 6.42 -51.93 -0.33 0.19 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -31.26 339.42 -7.86 -39.12 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.02 Total: 1.91 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.66 Total: -2.25 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.34 Total: -49.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.26 -7.86 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.701 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds