Wall clock time and date at job start Tue Mar 31 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47340 * 299.90460 * 3 2 1 5 5 C 1.36934 * 119.99873 * 96.84936 * 4 3 2 6 6 H 1.08004 * 119.99624 * 155.89786 * 5 4 3 7 7 C 1.38807 * 120.00386 * 335.89768 * 5 4 3 8 8 N 1.31621 * 119.99924 * 351.02815 * 7 5 4 9 9 Si 1.86801 * 120.00134 * 171.02759 * 7 5 4 10 10 H 1.48501 * 109.47218 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46927 * 299.99654 * 9 7 5 12 12 H 1.48493 * 109.47223 * 60.00331 * 9 7 5 13 13 C 1.46495 * 119.99639 * 276.85603 * 4 3 2 14 14 C 1.50705 * 109.47046 * 269.99377 * 13 4 3 15 15 O 1.21289 * 119.99578 * 0.02562 * 14 13 4 16 16 N 1.34775 * 119.99982 * 180.02562 * 14 13 4 17 17 C 1.46918 * 120.63070 * 354.57914 * 16 14 13 18 18 C 1.52764 * 109.00759 * 233.58084 * 17 16 14 19 19 C 1.53041 * 109.38396 * 305.58935 * 18 17 16 20 20 C 1.53048 * 109.53661 * 61.23628 * 19 18 17 21 21 C 1.46929 * 120.62767 * 174.85471 * 16 14 13 22 22 H 1.08998 * 109.58888 * 246.16105 * 21 16 14 23 23 C 1.53004 * 109.58509 * 6.44030 * 21 16 14 24 24 C 1.53002 * 109.46734 * 181.39062 * 23 21 16 25 25 H 4.40650 * 5.51387 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47371 * 179.90222 * 3 2 1 27 27 H 1.09001 * 109.46943 * 59.90239 * 3 2 1 28 28 H 0.97010 * 120.00186 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47508 * 29.99641 * 13 4 3 30 30 H 1.09001 * 109.46934 * 149.99826 * 13 4 3 31 31 H 1.09002 * 109.59065 * 353.41259 * 17 16 14 32 32 H 1.09003 * 109.58834 * 113.84732 * 17 16 14 33 33 H 1.09000 * 109.56829 * 185.55375 * 18 17 16 34 34 H 1.09003 * 109.38605 * 65.51016 * 18 17 16 35 35 H 1.09003 * 109.46344 * 301.21996 * 19 18 17 36 36 H 1.09001 * 109.45047 * 181.25006 * 19 18 17 37 37 H 1.09002 * 109.49587 * 178.68322 * 20 19 18 38 38 H 1.09002 * 109.52154 * 58.60718 * 20 19 18 39 39 H 1.09001 * 109.47347 * 301.38964 * 23 21 16 40 40 H 1.08997 * 109.47096 * 61.39493 * 23 21 16 41 41 H 1.09007 * 109.47074 * 184.15764 * 24 23 21 42 42 H 1.08992 * 109.47583 * 304.16111 * 24 23 21 43 43 H 1.09004 * 109.47133 * 64.15942 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.6878 1.1974 5 6 3.4968 -2.0066 1.1290 6 1 4.1956 -2.4124 1.8455 7 6 2.9659 -2.8218 0.1389 8 7 1.9866 -2.3806 -0.6218 9 14 3.6412 -4.5450 -0.1138 10 1 2.9099 -5.2052 -1.2250 11 1 5.0854 -4.4662 -0.4503 12 1 3.4654 -5.3333 1.1323 13 6 3.2357 0.0348 2.4677 14 6 4.6002 0.6645 2.5803 15 8 5.4085 0.5239 1.6869 16 7 4.9223 1.3839 3.6735 17 6 3.9178 1.6628 4.7087 18 6 3.8630 3.1693 4.9557 19 6 5.2667 3.6811 5.2873 20 6 6.2004 3.4175 4.1037 21 6 6.2832 1.9091 3.8498 22 1 6.7559 1.4205 4.7018 23 6 7.1034 1.6429 2.5859 24 6 8.5295 2.1599 2.7853 25 1 -1.0500 0.0001 0.0002 26 1 3.0088 1.0284 -0.0018 27 1 3.0095 -0.5145 -0.8891 28 1 1.6157 -2.9501 -1.3140 29 1 2.4726 0.8122 2.5053 30 1 3.0872 -0.6605 3.2939 31 1 2.9412 1.3131 4.3740 32 1 4.1938 1.1538 5.6323 33 1 3.1931 3.3784 5.7898 34 1 3.4956 3.6698 4.0597 35 1 5.6433 3.1629 6.1692 36 1 5.2251 4.7522 5.4855 37 1 7.1941 3.8032 4.3313 38 1 5.8117 3.9152 3.2152 39 1 7.1296 0.5712 2.3887 40 1 6.6455 2.1568 1.7407 41 1 9.0930 2.0374 1.8602 42 1 8.4991 3.2154 3.0552 43 1 9.0127 1.5949 3.5825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281514548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:18 Heat of formation + Delta-G solvation = 38.505414 kcal Electronic energy + Delta-G solvation = -22759.713968 eV Core-core repulsion = 19614.172530 eV Total energy + Delta-G solvation = -3145.541438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38615 -38.55764 -37.34791 -35.20524 -33.68936 -33.47963 -32.93974 -30.31534 -29.05252 -27.90989 -25.95645 -24.97890 -23.82111 -22.04143 -21.68926 -19.88649 -19.34428 -18.21067 -17.59624 -17.09313 -16.66621 -16.43179 -15.63008 -15.50478 -15.31359 -15.16122 -14.86612 -14.46810 -14.29136 -14.11301 -13.87729 -13.46391 -13.31801 -13.13335 -12.97161 -12.78077 -12.57982 -12.53076 -12.28395 -12.05846 -11.92557 -11.77369 -11.66671 -11.42758 -11.33293 -10.94641 -10.75886 -10.32963 -9.93378 -9.35278 -8.81332 -7.82721 -5.34573 1.44325 1.48107 1.53838 1.90160 2.10328 2.38854 2.51741 2.60171 3.31218 3.69348 3.78764 3.90821 3.96936 4.08556 4.14416 4.22581 4.34180 4.35175 4.46392 4.52456 4.57575 4.63964 4.71148 4.77306 4.88339 4.93413 4.95513 5.04402 5.14239 5.18285 5.23643 5.28568 5.32532 5.38334 5.51235 5.55130 5.60239 5.67291 5.91911 6.27988 6.61865 7.08379 7.35757 7.51133 7.78588 8.20547 9.17751 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.005454 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.986080 B = 5132.837986 C = 5934.539868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.131 4.131 3 C 0.281 3.719 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.061 0.939 7 C -0.043 4.043 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.134 3.866 14 C 0.481 3.519 15 O -0.557 6.557 16 N -0.616 5.616 17 C 0.101 3.899 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.125 4.125 21 C 0.144 3.856 22 H 0.075 0.925 23 C -0.104 4.104 24 C -0.151 4.151 25 H 0.227 0.773 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.248 0.752 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.063 13.116 14.033 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.133 4.133 3 C 0.155 3.845 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.239 4.239 8 N -0.561 5.561 9 Si 0.796 3.204 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.004 3.996 14 C 0.268 3.732 15 O -0.434 6.434 16 N -0.352 5.352 17 C -0.021 4.021 18 C -0.170 4.170 19 C -0.152 4.152 20 C -0.164 4.164 21 C 0.041 3.959 22 H 0.093 0.907 23 C -0.142 4.142 24 C -0.209 4.209 25 H 0.244 0.756 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.422 12.911 13.419 19.396 hybrid contribution 0.043 -1.254 -0.732 1.453 sum 5.466 11.657 12.687 18.075 Atomic orbital electron populations 1.24989 0.96198 1.06501 1.02833 1.24399 0.95714 0.95188 0.98025 1.17419 0.83217 0.92896 0.90930 1.43614 1.74082 1.07933 1.04173 1.19243 1.19715 0.85676 1.14526 0.92107 1.25692 0.97148 1.01303 0.99711 1.70156 1.26169 1.36779 1.23026 0.85354 0.77327 0.80406 0.77326 1.21699 1.21375 1.20042 1.20880 0.92480 0.96415 0.89843 1.22668 0.91559 0.77797 0.81193 1.90678 1.51083 1.60978 1.40706 1.48454 1.11932 1.53292 1.21529 1.21864 0.91832 0.97321 0.91062 1.21844 0.98370 0.94250 1.02499 1.21515 0.94209 1.01992 0.97482 1.21995 1.01394 0.93945 0.99022 1.21376 0.81760 0.94971 0.97775 0.90679 1.21813 0.95073 1.01081 0.96233 1.21934 0.95684 1.01758 1.01533 0.75647 0.94263 0.91590 0.94195 0.89880 0.89739 0.89609 0.89957 0.88295 0.92842 0.90641 0.90281 0.89187 0.93326 0.93239 0.94084 0.93378 0.91099 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.76 19.25 74.32 1.43 -11.33 16 2 C -0.13 -6.51 11.47 31.13 0.36 -6.15 16 3 C 0.28 14.53 5.40 84.57 0.46 14.99 16 4 N -0.58 -29.90 1.98 -716.91 -1.42 -31.31 16 5 C -0.26 -14.82 9.66 84.03 0.81 -14.01 16 6 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 7 C -0.04 -2.42 5.12 84.86 0.43 -1.99 16 8 N -0.92 -53.88 9.09 21.65 0.20 -53.69 16 9 Si 0.97 46.58 29.56 68.60 2.03 48.60 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 C 0.13 5.48 4.56 85.64 0.39 5.87 16 14 C 0.48 18.93 7.68 87.66 0.67 19.60 16 15 O -0.56 -26.53 11.84 -3.06 -0.04 -26.56 16 16 N -0.62 -18.00 2.98 -795.85 -2.37 -20.37 16 17 C 0.10 2.10 6.30 86.22 0.54 2.64 16 18 C -0.13 -2.12 6.06 30.53 0.19 -1.94 16 19 C -0.11 -1.67 5.89 30.62 0.18 -1.49 16 20 C -0.13 -2.43 4.92 30.67 0.15 -2.28 16 21 C 0.14 3.71 2.99 44.97 0.13 3.85 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.10 -3.29 3.85 30.60 0.12 -3.17 16 24 C -0.15 -3.52 9.72 71.98 0.70 -2.83 16 25 H 0.23 7.95 7.80 -4.42 -0.03 7.91 16 26 H 0.04 1.90 8.12 -2.39 -0.02 1.88 16 27 H 0.07 3.85 6.47 -2.39 -0.02 3.84 16 28 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.08 3.05 7.40 -2.39 -0.02 3.03 16 30 H 0.08 3.28 8.02 -2.39 -0.02 3.26 16 31 H 0.09 1.81 5.96 -2.39 -0.01 1.79 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.40 6.71 -2.39 -0.02 1.39 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.96 6.34 -2.39 -0.02 1.94 16 40 H 0.04 1.52 7.13 -2.39 -0.02 1.51 16 41 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 42 H 0.07 1.34 6.42 -2.39 -0.02 1.32 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.41 339.42 5.94 -64.48 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.97 Total: 17.09 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 6.57 Total: 1.77 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.59 Total: -105.37 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.56 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -70.41 5.94 -64.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281514548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.982 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds