Wall clock time and date at job start Tue Mar 31 2020 01:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99781 * 2 1 4 4 N 1.46504 * 109.46953 * 124.99508 * 3 2 1 5 5 C 1.46761 * 124.35184 * 269.99720 * 4 3 2 6 6 C 1.54481 * 105.47363 * 196.99667 * 5 4 3 7 7 C 1.54631 * 101.76435 * 334.58411 * 6 5 4 8 8 H 1.08998 * 110.59620 * 143.53003 * 7 6 5 9 9 N 1.46499 * 110.49144 * 266.11818 * 7 6 5 10 10 C 1.36937 * 119.99689 * 58.73989 * 9 7 6 11 11 H 1.08008 * 119.99806 * 112.24734 * 10 9 7 12 12 C 1.38806 * 120.00244 * 292.25196 * 10 9 7 13 13 N 1.31617 * 119.99965 * 327.63599 * 12 10 9 14 14 Si 1.86800 * 120.00237 * 147.64301 * 12 10 9 15 15 H 1.48491 * 109.47597 * 89.99789 * 14 12 10 16 16 H 1.48508 * 109.47200 * 209.99842 * 14 12 10 17 17 H 1.48505 * 109.46805 * 329.99390 * 14 12 10 18 18 C 1.46490 * 120.00266 * 238.74573 * 9 7 6 19 19 C 1.54269 * 110.03296 * 242.41152 * 18 9 7 20 20 C 1.54891 * 104.19720 * 217.10723 * 19 18 9 21 21 C 1.54886 * 102.74846 * 37.93611 * 20 19 18 22 22 C 1.53871 * 110.03550 * 125.24132 * 18 9 7 23 23 C 1.34424 * 124.34506 * 89.97943 * 4 3 2 24 24 O 1.21277 * 124.94579 * 359.57284 * 23 4 3 25 25 H 1.08001 * 120.00418 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99811 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00008 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47427 * 4.99922 * 3 2 1 29 29 H 1.08995 * 109.47293 * 244.99791 * 3 2 1 30 30 H 1.08998 * 110.25096 * 315.99944 * 5 4 3 31 31 H 1.09005 * 110.24459 * 77.91091 * 5 4 3 32 32 H 1.09003 * 110.97024 * 216.47275 * 6 5 4 33 33 H 1.09002 * 110.96969 * 92.70423 * 6 5 4 34 34 H 0.97008 * 120.00257 * 185.12889 * 13 12 10 35 35 H 1.09000 * 110.05573 * 3.81976 * 18 9 7 36 36 H 1.09001 * 110.48191 * 335.78050 * 19 18 9 37 37 H 1.09001 * 110.49290 * 98.42294 * 19 18 9 38 38 H 1.09000 * 110.75250 * 279.62303 * 20 19 18 39 39 H 1.08999 * 110.91801 * 156.33071 * 20 19 18 40 40 H 1.09007 * 110.48873 * 203.38095 * 21 20 19 41 41 H 1.08997 * 110.59966 * 80.79782 * 21 20 19 42 42 H 1.09003 * 110.03607 * 238.56605 * 22 18 9 43 43 H 1.08997 * 110.03189 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.6598 1.8434 2.4660 6 6 4.0155 2.0765 3.1691 7 6 4.9326 1.0789 2.4241 8 1 5.9310 1.4974 2.2970 9 7 4.9996 -0.1939 3.1464 10 6 3.8545 -0.9050 3.3881 11 1 3.6953 -1.8547 2.8990 12 6 2.8985 -0.4052 4.2616 13 7 3.2671 0.3240 5.2934 14 14 1.0890 -0.7679 3.9729 15 1 0.7169 -2.0216 4.6763 16 1 0.2695 0.3548 4.4958 17 1 0.8418 -0.9250 2.5170 18 6 6.2914 -0.7058 3.6101 19 6 6.6035 -2.0519 2.9241 20 6 7.2998 -2.8877 4.0266 21 6 6.5155 -2.4919 5.3022 22 6 6.2355 -0.9856 5.1221 23 6 4.2624 0.8909 1.0809 24 8 4.7926 0.4113 0.1012 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 2.1112 2.7817 2.3841 31 1 2.0701 1.1091 3.0148 32 1 3.9524 1.8312 4.2293 33 1 4.3575 3.1017 3.0270 34 1 2.6080 0.6109 5.9449 35 1 7.0792 0.0154 3.3926 36 1 5.6828 -2.5379 2.6012 37 1 7.2740 -1.9025 2.0778 38 1 8.3499 -2.6095 4.1169 39 1 7.2003 -3.9547 3.8273 40 1 7.1219 -2.6636 6.1916 41 1 5.5807 -3.0488 5.3658 42 1 6.9962 -0.4001 5.6386 43 1 5.2474 -0.7400 5.5110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282134188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:12 Heat of formation + Delta-G solvation = 3.254238 kcal Electronic energy + Delta-G solvation = -23842.698100 eV Core-core repulsion = 20695.628057 eV Total energy + Delta-G solvation = -3147.070044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.34423 -38.99895 -37.38369 -36.36515 -34.62440 -33.31673 -31.34211 -29.17536 -28.35033 -27.83446 -27.00082 -24.70089 -22.37433 -21.42708 -21.22064 -20.67162 -20.06151 -18.58737 -17.62111 -17.22788 -16.62427 -16.43991 -16.17109 -15.90156 -15.37978 -14.95849 -14.84809 -14.31978 -14.26189 -14.04420 -13.90460 -13.41246 -13.30040 -13.10357 -13.04011 -12.52300 -12.42965 -12.24324 -12.16987 -11.95599 -11.72353 -11.66793 -11.55007 -11.52625 -11.22366 -10.93408 -10.69570 -10.37508 -10.07617 -9.48537 -8.32277 -7.56014 -5.73632 1.18500 1.34108 1.45297 1.58105 1.80830 2.42997 2.46359 3.03122 3.68294 3.81591 3.94122 4.00980 4.08290 4.11784 4.21126 4.30921 4.36303 4.51786 4.57838 4.67595 4.74824 4.79726 4.84993 4.87428 4.96430 4.98285 5.04078 5.11347 5.27134 5.28716 5.33856 5.47199 5.55725 5.66050 5.67787 5.71853 5.74796 5.89196 6.03990 6.17781 6.32614 6.75378 7.30582 7.43843 7.71532 8.54055 8.98012 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.008341 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.778370 B = 3356.242626 C = 3899.122160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.181 4.181 3 C 0.150 3.850 4 N -0.606 5.606 5 C 0.112 3.888 6 C -0.163 4.163 7 C 0.150 3.850 8 H 0.080 0.920 9 N -0.564 5.564 10 C -0.291 4.291 11 H 0.007 0.993 12 C 0.058 3.942 13 N -0.853 5.853 14 Si 0.892 3.108 15 H -0.303 1.303 16 H -0.273 1.273 17 H -0.257 1.257 18 C 0.168 3.832 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.110 4.110 22 C -0.135 4.135 23 C 0.513 3.487 24 O -0.594 6.594 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 3.976 -1.965 4.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C 0.029 3.971 4 N -0.338 5.338 5 C -0.010 4.010 6 C -0.202 4.202 7 C 0.039 3.961 8 H 0.098 0.902 9 N -0.285 5.285 10 C -0.421 4.421 11 H 0.024 0.976 12 C -0.146 4.146 13 N -0.489 5.489 14 Si 0.719 3.281 15 H -0.231 1.231 16 H -0.198 1.198 17 H -0.181 1.181 18 C 0.062 3.938 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.174 4.174 23 C 0.301 3.699 24 O -0.475 6.475 25 H 0.142 0.858 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.252 3.921 -2.397 4.763 hybrid contribution -1.155 -0.726 -0.182 1.376 sum -2.407 3.195 -2.579 4.759 Atomic orbital electron populations 1.23986 0.94802 1.03154 0.98803 1.23223 0.96957 0.98515 1.01390 1.20578 0.91913 0.95728 0.88910 1.48266 1.11842 1.61559 1.12091 1.22147 0.99015 0.98195 0.81653 1.23454 0.93581 0.97880 1.05310 1.21300 0.97342 0.89574 0.87886 0.90226 1.43543 1.02726 1.20634 1.61625 1.17899 0.95876 1.03823 1.24463 0.97563 1.25711 1.00045 0.95753 0.93138 1.69917 1.33922 1.36864 1.08207 0.86684 0.84413 0.77154 0.79815 1.23093 1.19827 1.18110 1.21308 0.86646 0.93023 0.92780 1.22678 0.98481 0.98095 0.97596 1.22375 0.99055 0.98752 0.94628 1.22169 0.98555 0.96619 0.97449 1.22595 1.03201 0.94971 0.96614 1.22265 0.82785 0.74479 0.90376 1.90515 1.70382 1.47301 1.39289 0.85790 0.88142 0.90834 0.87111 0.90186 0.89594 0.92665 0.85508 0.90465 0.92643 0.93396 0.94472 0.93504 0.90465 0.91979 0.91350 0.94292 0.93616 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 14.01 67.78 0.95 -3.75 16 2 C -0.18 -6.24 9.12 25.65 0.23 -6.01 16 3 C 0.15 4.88 6.37 85.63 0.55 5.42 16 4 N -0.61 -23.71 2.92 -822.32 -2.40 -26.10 16 5 C 0.11 4.17 6.60 86.83 0.57 4.74 16 6 C -0.16 -6.32 6.19 31.65 0.20 -6.12 16 7 C 0.15 6.53 3.58 44.99 0.16 6.69 16 8 H 0.08 3.30 7.64 -2.39 -0.02 3.28 16 9 N -0.56 -26.62 2.26 -650.32 -1.47 -28.09 16 10 C -0.29 -14.91 6.42 84.03 0.54 -14.37 16 11 H 0.01 0.40 7.35 -2.91 -0.02 0.38 16 12 C 0.06 2.81 2.87 84.86 0.24 3.05 16 13 N -0.85 -40.75 9.28 21.65 0.20 -40.54 16 14 Si 0.89 39.38 26.79 68.60 1.84 41.22 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.26 -11.34 6.04 99.48 0.60 -10.74 16 18 C 0.17 7.23 3.44 45.72 0.16 7.38 16 19 C -0.13 -5.30 6.42 31.67 0.20 -5.10 16 20 C -0.11 -3.70 6.91 31.88 0.22 -3.48 16 21 C -0.11 -4.00 6.83 31.67 0.22 -3.79 16 22 C -0.14 -5.57 6.25 31.32 0.20 -5.38 16 23 C 0.51 23.45 7.02 87.90 0.62 24.06 16 24 O -0.59 -30.86 17.60 -3.02 -0.05 -30.91 16 25 H 0.12 2.67 7.84 -2.91 -0.02 2.65 16 26 H 0.10 2.64 8.06 -2.91 -0.02 2.61 16 27 H 0.07 3.05 8.06 -2.91 -0.02 3.02 16 28 H 0.11 2.73 7.79 -2.39 -0.02 2.71 16 29 H 0.08 2.63 7.93 -2.39 -0.02 2.61 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.29 2.36 -2.38 -0.01 2.29 16 32 H 0.13 5.55 4.88 -2.39 -0.01 5.54 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.26 12.11 8.32 -92.70 -0.77 11.34 16 35 H 0.05 1.96 7.63 -2.39 -0.02 1.94 16 36 H 0.04 1.76 6.81 -2.39 -0.02 1.74 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 4.46 5.24 -2.39 -0.01 4.45 16 Total: -1.00 -59.00 326.18 4.04 -54.96 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.88 Total: 26.10 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.05 Total: 3.36 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.67 Total: -94.74 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.84 Total: 41.22 kcal Total: -59.00 4.04 -54.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282134188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.211 kcal (2) G-P(sol) polarization free energy of solvation -59.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds