Wall clock time and date at job start Tue Mar 31 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99841 * 2 1 4 4 N 1.46506 * 109.47425 * 124.99440 * 3 2 1 5 5 C 1.46489 * 119.99752 * 265.36847 * 4 3 2 6 6 C 1.50699 * 109.47355 * 269.99531 * 5 4 3 7 7 H 1.08001 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00340 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99824 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00110 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47734 * 89.99916 * 10 8 6 12 12 H 1.48506 * 109.47165 * 210.00298 * 10 8 6 13 13 H 1.48505 * 109.46955 * 329.99863 * 10 8 6 14 14 C 1.34773 * 119.99717 * 85.36542 * 4 3 2 15 15 O 1.21278 * 119.99679 * 185.74143 * 14 4 3 16 16 C 1.50706 * 120.00455 * 5.74517 * 14 4 3 17 17 C 1.54132 * 110.74583 * 210.20440 * 16 14 4 18 18 C 1.55155 * 102.88653 * 98.15971 * 17 16 14 19 19 C 1.54838 * 101.66031 * 36.15641 * 18 17 16 20 20 N 1.47861 * 111.37576 * 329.48383 * 16 14 4 21 21 C 1.47956 * 108.37131 * 120.68542 * 20 16 14 22 22 C 1.54832 * 105.06555 * 337.18599 * 21 20 16 23 23 C 1.54136 * 110.74628 * 88.75936 * 16 14 4 24 24 H 1.08000 * 120.00377 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00108 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00377 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47262 * 4.98953 * 3 2 1 28 28 H 1.09003 * 109.46970 * 244.99361 * 3 2 1 29 29 H 1.09000 * 109.47567 * 30.00332 * 5 4 3 30 30 H 1.09005 * 109.46942 * 150.00035 * 5 4 3 31 31 H 0.97003 * 119.99738 * 179.97438 * 9 8 6 32 32 H 1.09001 * 110.73335 * 339.80690 * 17 16 14 33 33 H 1.09005 * 110.72633 * 216.50823 * 17 16 14 34 34 H 1.09003 * 110.99237 * 154.24490 * 18 17 16 35 35 H 1.08994 * 110.99209 * 278.05754 * 18 17 16 36 36 H 1.08994 * 110.32931 * 82.23027 * 19 18 17 37 37 H 1.09010 * 110.32115 * 204.43303 * 19 18 17 38 38 H 1.08996 * 110.32322 * 218.28591 * 21 20 16 39 39 H 1.09001 * 110.40562 * 96.12569 * 21 20 16 40 40 H 1.08998 * 110.98923 * 278.57569 * 22 21 20 41 41 H 1.09007 * 110.98699 * 154.76615 * 22 21 20 42 42 H 1.09009 * 110.73113 * 20.18830 * 23 16 14 43 43 H 1.08996 * 110.73055 * 143.48753 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5928 1.9569 2.3944 6 6 2.9699 3.4158 2.3750 7 1 3.4589 3.8357 1.5084 8 6 2.6908 4.2146 3.4636 9 7 2.0959 3.7032 4.5191 10 14 3.1576 6.0232 3.4392 11 1 2.0334 6.8172 2.8817 12 1 3.4470 6.4784 4.8228 13 1 4.3638 6.2117 2.5936 14 6 4.2180 0.7819 1.0105 15 8 4.9489 0.7109 1.9757 16 6 4.6790 0.2552 -0.3241 17 6 5.6563 -0.9221 -0.1385 18 6 4.7441 -2.1625 -0.3291 19 6 3.7734 -1.6709 -1.4307 20 7 3.5424 -0.2408 -1.1295 21 6 3.4965 0.5266 -2.3936 22 6 4.2384 1.8507 -2.0877 23 6 5.3681 1.3659 -1.1410 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0894 28 1 2.6213 1.4026 -0.9314 29 1 1.5143 1.8620 2.5206 30 1 3.1005 1.4615 3.2221 31 1 1.8998 4.2651 5.2851 32 1 6.0883 -0.9108 0.8622 33 1 6.4382 -0.8978 -0.8976 34 1 5.3202 -3.0220 -0.6717 35 1 4.2060 -2.3963 0.5895 36 1 4.2296 -1.7817 -2.4143 37 1 2.8353 -2.2240 -1.3831 38 1 2.4635 0.7281 -2.6768 39 1 4.0067 -0.0184 -3.1878 40 1 3.5817 2.5583 -1.5816 41 1 4.6515 2.2860 -2.9977 42 1 5.6994 2.1748 -0.4898 43 1 6.2038 0.9624 -1.7126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293656025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:56 Heat of formation + Delta-G solvation = 33.822850 kcal Electronic energy + Delta-G solvation = -23804.146442 eV Core-core repulsion = 20658.401953 eV Total energy + Delta-G solvation = -3145.744489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10360 -37.69934 -35.69140 -33.96503 -33.01128 -31.84931 -31.18042 -28.51427 -27.27296 -25.73139 -24.84271 -23.36134 -21.59101 -20.73402 -20.62230 -19.60608 -17.93368 -16.62450 -16.50663 -16.18856 -15.32405 -15.11282 -14.36959 -14.21212 -14.18090 -13.71237 -13.44286 -12.90904 -12.87517 -12.60642 -12.36597 -12.08987 -11.77094 -11.55454 -11.41823 -11.26899 -11.15882 -10.98567 -10.85555 -10.82299 -10.64434 -10.56318 -10.43259 -10.33128 -10.12077 -9.53562 -9.03283 -8.73125 -8.37296 -8.13081 -7.46330 -5.98061 -4.02931 2.85109 3.32471 3.38426 3.41079 3.46420 3.94616 4.14318 4.46585 4.59360 4.61842 4.84735 4.95822 5.03943 5.10777 5.25238 5.34906 5.37568 5.47816 5.57183 5.63575 5.72999 5.79712 5.80778 5.86396 5.88860 5.96872 6.06084 6.12841 6.18111 6.23048 6.32204 6.46535 6.61596 6.79921 6.92034 7.20196 7.22998 7.36171 7.56313 7.74822 8.00617 8.31563 8.62090 8.97078 9.24019 9.62159 11.09765 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.006394 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.213890 B = 4378.052820 C = 4649.269007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.114 4.114 3 C 0.128 3.872 4 N -0.578 5.578 5 C 0.244 3.756 6 C -0.524 4.524 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.534 3.466 15 O -0.550 6.550 16 C 0.068 3.932 17 C -0.125 4.125 18 C -0.132 4.132 19 C 0.027 3.973 20 N -0.491 5.491 21 C 0.027 3.973 22 C -0.142 4.142 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -9.295 -16.274 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.133 4.133 3 C 0.005 3.995 4 N -0.306 5.306 5 C 0.125 3.875 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.025 4.025 17 C -0.163 4.163 18 C -0.170 4.170 19 C -0.100 4.100 20 N -0.216 5.216 21 C -0.100 4.100 22 C -0.180 4.180 23 C -0.162 4.162 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.067 -9.193 -15.259 17.933 hybrid contribution 0.793 0.910 -0.375 1.264 sum 2.861 -8.283 -15.634 17.923 Atomic orbital electron populations 1.23718 0.96258 1.00794 1.05646 1.23522 0.94778 0.99903 0.95102 1.21196 0.92604 0.94176 0.91506 1.48005 1.12651 1.54871 1.15088 1.19272 0.95678 0.92238 0.80299 1.21444 1.39002 0.94146 1.01697 0.92593 1.24933 0.95200 0.98733 0.95251 1.69946 1.41888 1.35979 1.05489 0.86533 0.78748 0.85018 0.77319 1.20668 1.21124 1.19963 1.19681 0.82152 0.78146 0.88151 1.90642 1.54604 1.58432 1.39134 1.22499 0.90349 0.95864 0.93809 1.22803 0.96804 0.92621 1.04113 1.22766 0.97296 0.97574 0.99340 1.23364 0.99345 0.89873 0.97459 1.66360 1.38668 1.02543 1.14016 1.23318 1.01308 0.94157 0.91202 1.23044 0.97675 0.97574 0.99709 1.22804 0.97668 0.98209 0.97563 0.89253 0.89629 0.86933 0.91841 0.87377 0.95129 0.94038 0.92800 0.88862 0.91091 0.90912 0.90645 0.93117 0.90075 0.89470 0.92814 0.89355 0.90500 0.89915 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.38 14.32 29.02 0.42 -2.97 16 2 C -0.11 -1.83 8.36 -36.02 -0.30 -2.13 16 3 C 0.13 2.30 5.23 -5.19 -0.03 2.27 16 4 N -0.58 -12.84 2.45 -176.43 -0.43 -13.27 16 5 C 0.24 6.67 5.18 -5.20 -0.03 6.64 16 6 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.53 11.50 6.55 -10.98 -0.07 11.43 16 15 O -0.55 -14.18 15.31 5.56 0.09 -14.10 16 16 C 0.07 1.05 0.77 -131.04 -0.10 0.95 16 17 C -0.12 -1.73 5.99 -25.00 -0.15 -1.88 16 18 C -0.13 -1.54 7.07 -24.62 -0.17 -1.72 16 19 C 0.03 0.29 6.07 -2.27 -0.01 0.28 16 20 N -0.49 -6.36 0.92 -214.07 -0.20 -6.56 16 21 C 0.03 0.29 5.55 -2.28 -0.01 0.28 16 22 C -0.14 -1.67 6.46 -24.62 -0.16 -1.83 16 23 C -0.12 -1.71 6.03 -25.00 -0.15 -1.86 16 24 H 0.09 1.34 7.84 -52.49 -0.41 0.93 16 25 H 0.09 1.13 8.06 -52.48 -0.42 0.71 16 26 H 0.11 1.78 5.67 -52.49 -0.30 1.48 16 27 H 0.06 1.21 7.69 -51.93 -0.40 0.81 16 28 H 0.11 1.66 1.07 -51.93 -0.06 1.61 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.09 1.53 6.91 -51.93 -0.36 1.17 16 33 H 0.07 0.82 7.30 -51.93 -0.38 0.44 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.47 7.08 -51.93 -0.37 0.10 16 37 H 0.08 0.83 7.62 -51.92 -0.40 0.43 16 38 H 0.09 0.88 7.78 -51.93 -0.40 0.48 16 39 H 0.05 0.49 7.08 -51.93 -0.37 0.12 16 40 H 0.09 1.21 6.65 -51.93 -0.35 0.86 16 41 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.08 1.34 7.85 -51.92 -0.41 0.94 16 43 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 LS Contribution 327.13 15.07 4.93 4.93 Total: -1.00 -32.74 327.13 -7.70 -40.44 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.61 Total: 2.19 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -1.19 Total: -4.32 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.11 Total: -46.24 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.74 -7.70 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293656025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.265 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds