Wall clock time and date at job start Tue Mar 31 2020 01:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99841 * 2 1 4 4 N 1.46506 * 109.47425 * 124.99440 * 3 2 1 5 5 C 1.46489 * 119.99752 * 265.36847 * 4 3 2 6 6 C 1.50699 * 109.47355 * 269.99531 * 5 4 3 7 7 H 1.08001 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00340 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99824 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00110 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47734 * 89.99916 * 10 8 6 12 12 H 1.48506 * 109.47165 * 210.00298 * 10 8 6 13 13 H 1.48505 * 109.46955 * 329.99863 * 10 8 6 14 14 C 1.34773 * 119.99717 * 85.36542 * 4 3 2 15 15 O 1.21278 * 119.99679 * 185.74143 * 14 4 3 16 16 C 1.50706 * 120.00455 * 5.74517 * 14 4 3 17 17 C 1.54132 * 110.74583 * 210.20440 * 16 14 4 18 18 C 1.55155 * 102.88653 * 98.15971 * 17 16 14 19 19 C 1.54838 * 101.66031 * 36.15641 * 18 17 16 20 20 N 1.47861 * 111.37576 * 329.48383 * 16 14 4 21 21 C 1.47956 * 108.37131 * 120.68542 * 20 16 14 22 22 C 1.54832 * 105.06555 * 337.18599 * 21 20 16 23 23 C 1.54136 * 110.74628 * 88.75936 * 16 14 4 24 24 H 1.08000 * 120.00377 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.00108 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00377 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47262 * 4.98953 * 3 2 1 28 28 H 1.09003 * 109.46970 * 244.99361 * 3 2 1 29 29 H 1.09000 * 109.47567 * 30.00332 * 5 4 3 30 30 H 1.09005 * 109.46942 * 150.00035 * 5 4 3 31 31 H 0.97003 * 119.99738 * 179.97438 * 9 8 6 32 32 H 1.09001 * 110.73335 * 339.80690 * 17 16 14 33 33 H 1.09005 * 110.72633 * 216.50823 * 17 16 14 34 34 H 1.09003 * 110.99237 * 154.24490 * 18 17 16 35 35 H 1.08994 * 110.99209 * 278.05754 * 18 17 16 36 36 H 1.08994 * 110.32931 * 82.23027 * 19 18 17 37 37 H 1.09010 * 110.32115 * 204.43303 * 19 18 17 38 38 H 1.08996 * 110.32322 * 218.28591 * 21 20 16 39 39 H 1.09001 * 110.40562 * 96.12569 * 21 20 16 40 40 H 1.08998 * 110.98923 * 278.57569 * 22 21 20 41 41 H 1.09007 * 110.98699 * 154.76615 * 22 21 20 42 42 H 1.09009 * 110.73113 * 20.18830 * 23 16 14 43 43 H 1.08996 * 110.73055 * 143.48753 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5928 1.9569 2.3944 6 6 2.9699 3.4158 2.3750 7 1 3.4589 3.8357 1.5084 8 6 2.6908 4.2146 3.4636 9 7 2.0959 3.7032 4.5191 10 14 3.1576 6.0232 3.4392 11 1 2.0334 6.8172 2.8817 12 1 3.4470 6.4784 4.8228 13 1 4.3638 6.2117 2.5936 14 6 4.2180 0.7819 1.0105 15 8 4.9489 0.7109 1.9757 16 6 4.6790 0.2552 -0.3241 17 6 5.6563 -0.9221 -0.1385 18 6 4.7441 -2.1625 -0.3291 19 6 3.7734 -1.6709 -1.4307 20 7 3.5424 -0.2408 -1.1295 21 6 3.4965 0.5266 -2.3936 22 6 4.2384 1.8507 -2.0877 23 6 5.3681 1.3659 -1.1410 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0894 28 1 2.6213 1.4026 -0.9314 29 1 1.5143 1.8620 2.5206 30 1 3.1005 1.4615 3.2221 31 1 1.8998 4.2651 5.2851 32 1 6.0883 -0.9108 0.8622 33 1 6.4382 -0.8978 -0.8976 34 1 5.3202 -3.0220 -0.6717 35 1 4.2060 -2.3963 0.5895 36 1 4.2296 -1.7817 -2.4143 37 1 2.8353 -2.2240 -1.3831 38 1 2.4635 0.7281 -2.6768 39 1 4.0067 -0.0184 -3.1878 40 1 3.5817 2.5583 -1.5816 41 1 4.6515 2.2860 -2.9977 42 1 5.6994 2.1748 -0.4898 43 1 6.2038 0.9624 -1.7126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293656025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:56 Heat of formation + Delta-G solvation = 13.983876 kcal Electronic energy + Delta-G solvation = -23805.006725 eV Core-core repulsion = 20658.401953 eV Total energy + Delta-G solvation = -3146.604772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32938 -39.29482 -37.30864 -35.15163 -34.85703 -33.56973 -32.27951 -30.02557 -28.87978 -26.97914 -26.14637 -25.29277 -22.69919 -22.10429 -21.64416 -20.92455 -19.33410 -18.60527 -17.99067 -17.58655 -16.98925 -16.42850 -16.11523 -15.58780 -15.51878 -15.09955 -14.51025 -14.32842 -14.27633 -13.97838 -13.89464 -13.47869 -13.27200 -13.06118 -12.92654 -12.61405 -12.54228 -12.38685 -12.32814 -12.23724 -12.03291 -11.91962 -11.82739 -11.71567 -11.59769 -11.31839 -10.66395 -10.64633 -10.02435 -9.36250 -9.19020 -8.23144 -6.39560 1.33749 1.37407 1.47624 1.53318 1.84747 2.34317 2.57946 2.92828 3.05188 3.51261 3.53824 3.76222 3.96278 4.02628 4.11603 4.23463 4.31244 4.45438 4.48491 4.55015 4.65908 4.71770 4.78859 4.85485 4.93814 4.97100 4.99028 5.05284 5.07519 5.10565 5.16590 5.21906 5.27362 5.29945 5.34242 5.55743 5.76100 5.85395 5.94435 6.03958 6.06708 6.19909 6.68737 6.88462 7.26587 7.53411 8.83970 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.006394 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.213890 B = 4378.052820 C = 4649.269007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.126 4.126 3 C 0.127 3.873 4 N -0.584 5.584 5 C 0.262 3.738 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.971 3.029 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.271 1.271 14 C 0.520 3.480 15 O -0.608 6.608 16 C 0.075 3.925 17 C -0.125 4.125 18 C -0.128 4.128 19 C 0.033 3.967 20 N -0.509 5.509 21 C 0.030 3.970 22 C -0.140 4.140 23 C -0.124 4.124 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.043 0.957 28 H 0.140 0.860 29 H 0.012 0.988 30 H -0.008 1.008 31 H 0.267 0.733 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.046 0.954 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -9.657 -20.021 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.145 4.145 3 C 0.006 3.994 4 N -0.312 5.312 5 C 0.140 3.860 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.794 3.206 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.195 1.195 14 C 0.308 3.692 15 O -0.490 6.490 16 C -0.018 4.018 17 C -0.164 4.164 18 C -0.166 4.166 19 C -0.094 4.094 20 N -0.234 5.234 21 C -0.097 4.097 22 C -0.177 4.177 23 C -0.163 4.163 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.062 0.938 28 H 0.157 0.843 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.152 -9.572 -19.061 21.438 hybrid contribution 0.716 0.974 0.836 1.470 sum 2.868 -8.599 -18.225 20.355 Atomic orbital electron populations 1.23911 0.95895 1.01797 1.03429 1.23378 0.95103 0.98973 0.97058 1.21477 0.92074 0.94782 0.91052 1.48042 1.14106 1.54613 1.14420 1.18682 0.93680 0.91858 0.81748 1.21680 1.39393 0.94972 1.02021 0.92831 1.25926 0.94748 1.04045 0.94573 1.70081 1.42592 1.38034 1.06196 0.85375 0.78948 0.78630 0.77624 1.18652 1.20471 1.19526 1.20931 0.80988 0.76978 0.90260 1.90593 1.55962 1.60499 1.41941 1.22256 0.91499 0.97138 0.90867 1.22821 0.97477 0.93022 1.03037 1.22763 0.97264 0.97702 0.98869 1.23425 0.99734 0.87931 0.98283 1.66146 1.37541 1.04329 1.15419 1.23428 1.02231 0.93244 0.90771 1.23038 0.96605 0.97929 1.00168 1.22852 0.99369 0.96633 0.97404 0.89607 0.87216 0.86281 0.93813 0.84343 0.96979 0.99037 0.92385 0.92597 0.87797 0.87874 0.93450 0.89863 0.89158 0.88451 0.89374 0.92113 0.87203 0.93530 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.07 14.32 67.79 0.97 -5.10 16 2 C -0.13 -3.97 8.36 25.65 0.21 -3.76 16 3 C 0.13 4.65 5.23 85.63 0.45 5.10 16 4 N -0.58 -27.52 2.45 -830.50 -2.04 -29.55 16 5 C 0.26 15.39 5.18 85.63 0.44 15.83 16 6 C -0.54 -32.93 9.39 25.60 0.24 -32.69 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -58.64 13.29 21.45 0.28 -58.36 16 10 Si 0.97 46.25 29.54 68.60 2.03 48.27 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.52 23.73 6.55 87.66 0.57 24.30 16 15 O -0.61 -34.00 15.31 -3.02 -0.05 -34.05 16 16 C 0.08 2.31 0.77 3.37 0.00 2.31 16 17 C -0.12 -3.33 5.99 31.72 0.19 -3.14 16 18 C -0.13 -2.73 7.07 31.96 0.23 -2.50 16 19 C 0.03 0.58 6.07 86.73 0.53 1.11 16 20 N -0.51 -11.93 0.92 -831.18 -0.76 -12.69 16 21 C 0.03 0.51 5.55 86.73 0.48 0.99 16 22 C -0.14 -2.90 6.46 31.96 0.21 -2.69 16 23 C -0.12 -3.23 6.03 31.72 0.19 -3.04 16 24 H 0.09 2.51 7.84 -2.91 -0.02 2.49 16 25 H 0.11 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.12 3.63 5.67 -2.91 -0.02 3.61 16 27 H 0.04 1.73 7.69 -2.39 -0.02 1.71 16 28 H 0.14 4.16 1.07 -2.39 0.00 4.16 16 29 H 0.01 0.74 8.07 -2.39 -0.02 0.72 16 30 H -0.01 -0.57 7.35 -2.38 -0.02 -0.59 16 31 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 32 H 0.06 1.92 6.91 -2.39 -0.02 1.90 16 33 H 0.10 2.06 7.30 -2.38 -0.02 2.05 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 0.99 7.08 -2.39 -0.02 0.97 16 37 H 0.09 1.48 7.62 -2.38 -0.02 1.46 16 38 H 0.10 1.54 7.78 -2.39 -0.02 1.52 16 39 H 0.09 1.00 7.08 -2.39 -0.02 0.98 16 40 H 0.06 1.60 6.65 -2.39 -0.02 1.59 16 41 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.05 1.54 7.85 -2.38 -0.02 1.53 16 43 H 0.11 2.11 7.30 -2.39 -0.02 2.10 16 Total: -1.00 -78.34 327.13 5.63 -72.70 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.99 Total: 16.15 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.18 Total: -2.47 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -2.51 Total: -100.61 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.05 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.34 5.63 -72.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293656025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.688 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds