Wall clock time and date at job start Tue Mar 31 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50696 * 120.00023 * 2 1 4 4 N 1.46503 * 109.47490 * 125.00136 * 3 2 1 5 5 C 1.46502 * 119.99427 * 275.28211 * 4 3 2 6 6 C 1.50701 * 109.47261 * 270.45951 * 5 4 3 7 7 H 1.08007 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99797 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47315 * 89.99830 * 10 8 6 12 12 H 1.48502 * 109.47076 * 209.99259 * 10 8 6 13 13 H 1.48496 * 109.47218 * 329.99534 * 10 8 6 14 14 C 1.34768 * 120.00431 * 95.27778 * 4 3 2 15 15 O 1.21284 * 119.99927 * 5.53239 * 14 4 3 16 16 C 1.50701 * 119.99997 * 185.52779 * 14 4 3 17 17 H 1.09001 * 110.42569 * 318.46468 * 16 14 4 18 18 C 1.54907 * 110.37343 * 80.77852 * 16 14 4 19 19 C 1.55138 * 101.65481 * 155.89834 * 18 16 14 20 20 C 1.54322 * 103.01891 * 324.34529 * 19 18 16 21 21 N 1.47444 * 107.23147 * 22.28304 * 20 19 18 22 22 C 1.46897 * 110.99822 * 123.25643 * 21 20 19 23 23 C 1.52999 * 117.50028 * 59.87298 * 22 21 20 24 24 C 1.52997 * 60.03154 * 107.50334 * 23 22 21 25 25 H 1.07999 * 120.00225 * 0.02562 * 1 2 3 26 26 H 1.08010 * 120.00140 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00225 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47576 * 4.99505 * 3 2 1 29 29 H 1.09003 * 109.47036 * 244.99749 * 3 2 1 30 30 H 1.09001 * 109.47534 * 30.45797 * 5 4 3 31 31 H 1.08998 * 109.47110 * 150.46389 * 5 4 3 32 32 H 0.96995 * 119.99769 * 180.02562 * 9 8 6 33 33 H 1.09006 * 110.98815 * 37.80370 * 18 16 14 34 34 H 1.08997 * 110.99155 * 273.99580 * 18 16 14 35 35 H 1.09005 * 110.70582 * 205.96670 * 19 18 16 36 36 H 1.08992 * 110.70453 * 82.72960 * 19 18 16 37 37 H 1.09002 * 109.88598 * 262.87984 * 20 19 18 38 38 H 1.08997 * 110.02232 * 141.76322 * 20 19 18 39 39 H 1.09001 * 115.56320 * 274.18722 * 22 21 20 40 40 H 1.09000 * 117.49513 * 359.97438 * 23 22 21 41 41 H 1.09001 * 117.50098 * 215.00114 * 23 22 21 42 42 H 1.08997 * 117.49838 * 107.48323 * 24 23 22 43 43 H 1.09004 * 117.49680 * 252.47675 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5268 1.7563 2.4536 6 6 2.6961 3.2474 2.5914 7 1 3.1097 3.8216 1.7755 8 6 2.3220 3.8788 3.7587 9 7 2.4702 5.1800 3.8791 10 14 1.6060 2.8857 5.1695 11 1 2.7030 2.4292 6.0603 12 1 0.6615 3.7325 5.9416 13 1 0.8844 1.7061 4.6284 14 6 4.2789 0.9662 0.9560 15 8 4.6905 0.7115 -0.1561 16 6 5.2047 0.8739 2.1415 17 1 5.0407 1.7124 2.8184 18 6 4.9957 -0.4686 2.8857 19 6 6.3635 -0.6500 3.5949 20 6 7.3647 -0.0733 2.5720 21 7 6.6132 0.8419 1.6934 22 6 7.2013 2.1879 1.7090 23 6 8.6554 2.3288 1.2545 24 6 7.5224 2.8350 0.3595 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4025 -0.9314 30 1 1.4740 1.4982 2.5673 31 1 3.1099 1.2518 3.2240 32 1 2.2074 5.6241 4.7004 33 1 4.8099 -1.2802 2.1821 34 1 4.1865 -0.3907 3.6118 35 1 6.5653 -1.7053 3.7788 36 1 6.3933 -0.0830 4.5252 37 1 7.7986 -0.8807 1.9821 38 1 8.1533 0.4733 3.0890 39 1 6.8594 2.8413 2.5117 40 1 9.1758 1.4227 0.9442 41 1 9.2702 3.0747 1.7583 42 1 7.3916 3.9138 0.2748 43 1 7.2975 2.2621 -0.5402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293661252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:06 Heat of formation + Delta-G solvation = 25.357854 kcal Electronic energy + Delta-G solvation = -22932.543746 eV Core-core repulsion = 19786.432187 eV Total energy + Delta-G solvation = -3146.111559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85282 -38.05681 -35.66563 -35.36809 -33.43819 -32.19541 -29.93334 -29.29383 -28.10494 -25.56420 -22.91502 -22.34159 -21.99190 -21.14528 -20.14825 -19.52256 -18.17404 -17.01538 -16.69149 -16.34468 -15.46884 -14.94195 -14.75095 -14.37117 -14.22563 -13.93388 -13.53680 -12.98190 -12.88004 -12.67691 -12.31329 -12.09805 -11.85864 -11.76843 -11.56306 -11.28471 -11.19264 -11.05394 -10.97868 -10.92803 -10.68279 -10.60967 -10.28093 -10.09010 -9.75880 -9.66521 -9.23448 -8.87704 -8.73960 -7.93579 -7.70646 -6.23717 -4.25070 2.50629 3.13426 3.22829 3.23790 3.37657 3.75653 4.06987 4.23727 4.34352 4.81007 4.88270 5.06427 5.07152 5.25471 5.27128 5.34089 5.42153 5.51655 5.56867 5.62979 5.73375 5.80916 5.84938 5.90211 5.99149 6.03866 6.09133 6.15677 6.20323 6.32967 6.33637 6.38526 6.48491 6.53911 6.66013 6.87608 6.97918 7.15238 7.39564 7.42279 7.47547 8.16622 8.43303 8.82829 9.05701 9.36099 10.88925 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.007604 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.617920 B = 3681.266152 C = 4551.668898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.592 5.592 5 C 0.209 3.791 6 C -0.540 4.540 7 H 0.078 0.922 8 C 0.076 3.924 9 N -0.890 5.890 10 Si 0.867 3.133 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.263 1.263 14 C 0.533 3.467 15 O -0.545 6.545 16 C 0.059 3.941 17 H 0.096 0.904 18 C -0.117 4.117 19 C -0.141 4.141 20 C 0.048 3.952 21 N -0.481 5.481 22 C 0.004 3.996 23 C -0.177 4.177 24 C -0.156 4.156 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 -9.958 -0.882 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.323 5.323 5 C 0.088 3.912 6 C -0.578 4.578 7 H 0.096 0.904 8 C -0.127 4.127 9 N -0.528 5.528 10 Si 0.694 3.306 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.187 1.187 14 C 0.320 3.680 15 O -0.423 6.423 16 C -0.052 4.052 17 H 0.113 0.887 18 C -0.156 4.156 19 C -0.179 4.179 20 C -0.079 4.079 21 N -0.205 5.205 22 C -0.105 4.105 23 C -0.214 4.214 24 C -0.193 4.193 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.427 -10.089 -1.846 11.604 hybrid contribution -0.605 0.066 1.815 1.915 sum 4.821 -10.023 -0.031 11.122 Atomic orbital electron populations 1.23785 0.95803 1.01587 1.01973 1.23411 0.96088 0.99318 0.98648 1.20408 0.92272 0.94538 0.90839 1.47834 1.08502 1.64757 1.11185 1.19806 0.95572 0.96228 0.79635 1.21418 1.43423 0.90641 1.02347 0.90368 1.24873 0.94946 0.94751 0.98138 1.69896 1.47194 1.08424 1.27279 0.86981 0.79901 0.80791 0.82974 1.19891 1.20815 1.18714 1.20083 0.81930 0.76222 0.89783 1.90574 1.75630 1.50509 1.25575 1.22516 0.88241 0.99657 0.94799 0.88663 1.22655 0.97771 0.96138 0.98991 1.22792 0.95006 1.01538 0.98577 1.22769 0.95991 0.96123 0.93048 1.62882 1.00322 1.06924 1.50368 1.22636 0.97142 0.91722 0.99013 1.23002 0.90731 1.03007 1.04710 1.22995 1.01048 1.00062 0.95223 0.88367 0.88922 0.87912 0.89956 0.89573 0.94891 0.95383 0.92396 0.90558 0.90031 0.90669 0.91138 0.90767 0.92355 0.88920 0.88751 0.89092 0.89046 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 14.32 29.02 0.42 -2.30 16 2 C -0.16 -2.49 9.84 -36.03 -0.35 -2.85 16 3 C 0.14 2.66 5.95 -5.19 -0.03 2.63 16 4 N -0.59 -12.31 2.44 -176.43 -0.43 -12.74 16 5 C 0.21 4.63 3.90 -5.19 -0.02 4.61 16 6 C -0.54 -14.20 9.74 -34.44 -0.34 -14.53 16 7 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 10 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 14 C 0.53 11.23 6.96 -10.99 -0.08 11.15 16 15 O -0.55 -12.62 16.05 5.55 0.09 -12.53 16 16 C 0.06 1.10 1.85 -67.34 -0.12 0.97 16 17 H 0.10 1.97 6.35 -51.93 -0.33 1.64 16 18 C -0.12 -1.80 6.20 -24.59 -0.15 -1.95 16 19 C -0.14 -1.79 6.94 -24.91 -0.17 -1.96 16 20 C 0.05 0.66 6.57 -2.83 -0.02 0.64 16 21 N -0.48 -8.29 4.56 -216.79 -0.99 -9.28 16 22 C 0.00 0.06 5.00 -67.68 -0.34 -0.27 16 23 C -0.18 -2.41 9.64 -26.73 -0.26 -2.67 16 24 C -0.16 -2.52 10.46 -26.70 -0.28 -2.79 16 25 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 26 H 0.09 1.11 8.06 -52.48 -0.42 0.69 16 27 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.08 1.54 7.76 -51.93 -0.40 1.14 16 29 H 0.09 1.65 7.21 -51.93 -0.37 1.27 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.03 0.60 4.58 -51.93 -0.24 0.36 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.08 1.21 7.03 -51.93 -0.37 0.85 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.74 7.23 -51.93 -0.38 0.36 16 39 H 0.09 1.65 7.75 -51.93 -0.40 1.25 16 40 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -29.93 348.47 -8.90 -38.83 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.08 Total: 7.82 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.84 Total: -7.37 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.65 Total: -46.97 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.93 -8.90 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293661252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.190 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds