Wall clock time and date at job start Tue Mar 31 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50696 * 120.00023 * 2 1 4 4 N 1.46503 * 109.47490 * 125.00136 * 3 2 1 5 5 C 1.46502 * 119.99427 * 275.28211 * 4 3 2 6 6 C 1.50701 * 109.47261 * 270.45951 * 5 4 3 7 7 H 1.08007 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00346 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00141 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99797 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47315 * 89.99830 * 10 8 6 12 12 H 1.48502 * 109.47076 * 209.99259 * 10 8 6 13 13 H 1.48496 * 109.47218 * 329.99534 * 10 8 6 14 14 C 1.34768 * 120.00431 * 95.27778 * 4 3 2 15 15 O 1.21284 * 119.99927 * 5.53239 * 14 4 3 16 16 C 1.50701 * 119.99997 * 185.52779 * 14 4 3 17 17 H 1.09001 * 110.42569 * 318.46468 * 16 14 4 18 18 C 1.54907 * 110.37343 * 80.77852 * 16 14 4 19 19 C 1.55138 * 101.65481 * 155.89834 * 18 16 14 20 20 C 1.54322 * 103.01891 * 324.34529 * 19 18 16 21 21 N 1.47444 * 107.23147 * 22.28304 * 20 19 18 22 22 C 1.46897 * 110.99822 * 123.25643 * 21 20 19 23 23 C 1.52999 * 117.50028 * 59.87298 * 22 21 20 24 24 C 1.52997 * 60.03154 * 107.50334 * 23 22 21 25 25 H 1.07999 * 120.00225 * 0.02562 * 1 2 3 26 26 H 1.08010 * 120.00140 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00225 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47576 * 4.99505 * 3 2 1 29 29 H 1.09003 * 109.47036 * 244.99749 * 3 2 1 30 30 H 1.09001 * 109.47534 * 30.45797 * 5 4 3 31 31 H 1.08998 * 109.47110 * 150.46389 * 5 4 3 32 32 H 0.96995 * 119.99769 * 180.02562 * 9 8 6 33 33 H 1.09006 * 110.98815 * 37.80370 * 18 16 14 34 34 H 1.08997 * 110.99155 * 273.99580 * 18 16 14 35 35 H 1.09005 * 110.70582 * 205.96670 * 19 18 16 36 36 H 1.08992 * 110.70453 * 82.72960 * 19 18 16 37 37 H 1.09002 * 109.88598 * 262.87984 * 20 19 18 38 38 H 1.08997 * 110.02232 * 141.76322 * 20 19 18 39 39 H 1.09001 * 115.56320 * 274.18722 * 22 21 20 40 40 H 1.09000 * 117.49513 * 359.97438 * 23 22 21 41 41 H 1.09001 * 117.50098 * 215.00114 * 23 22 21 42 42 H 1.08997 * 117.49838 * 107.48323 * 24 23 22 43 43 H 1.09004 * 117.49680 * 252.47675 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5268 1.7563 2.4536 6 6 2.6961 3.2474 2.5914 7 1 3.1097 3.8216 1.7755 8 6 2.3220 3.8788 3.7587 9 7 2.4702 5.1800 3.8791 10 14 1.6060 2.8857 5.1695 11 1 2.7030 2.4292 6.0603 12 1 0.6615 3.7325 5.9416 13 1 0.8844 1.7061 4.6284 14 6 4.2789 0.9662 0.9560 15 8 4.6905 0.7115 -0.1561 16 6 5.2047 0.8739 2.1415 17 1 5.0407 1.7124 2.8184 18 6 4.9957 -0.4686 2.8857 19 6 6.3635 -0.6500 3.5949 20 6 7.3647 -0.0733 2.5720 21 7 6.6132 0.8419 1.6934 22 6 7.2013 2.1879 1.7090 23 6 8.6554 2.3288 1.2545 24 6 7.5224 2.8350 0.3595 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6212 1.4025 -0.9314 30 1 1.4740 1.4982 2.5673 31 1 3.1099 1.2518 3.2240 32 1 2.2074 5.6241 4.7004 33 1 4.8099 -1.2802 2.1821 34 1 4.1865 -0.3907 3.6118 35 1 6.5653 -1.7053 3.7788 36 1 6.3933 -0.0830 4.5252 37 1 7.7986 -0.8807 1.9821 38 1 8.1533 0.4733 3.0890 39 1 6.8594 2.8413 2.5117 40 1 9.1758 1.4227 0.9442 41 1 9.2702 3.0747 1.7583 42 1 7.3916 3.9138 0.2748 43 1 7.2975 2.2621 -0.5402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293661252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:05 Heat of formation + Delta-G solvation = 7.046505 kcal Electronic energy + Delta-G solvation = -22933.337786 eV Core-core repulsion = 19786.432187 eV Total energy + Delta-G solvation = -3146.905599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32994 -39.48136 -37.07878 -36.85627 -35.10431 -33.98766 -31.13095 -30.59333 -29.98643 -27.02264 -24.67489 -23.66523 -23.32872 -22.43552 -21.39624 -20.78008 -19.73486 -19.05826 -18.23679 -17.79582 -16.92015 -16.38316 -16.14223 -15.95662 -15.69884 -15.35453 -14.83268 -14.65225 -14.20794 -14.16690 -13.96174 -13.55409 -13.37664 -13.16970 -12.87350 -12.73837 -12.62377 -12.49387 -12.39760 -12.30228 -12.12450 -11.95276 -11.76210 -11.71688 -11.35298 -10.98369 -10.83034 -10.70787 -10.26959 -9.44149 -9.25210 -8.32316 -6.40306 1.26994 1.36661 1.39626 1.49263 1.74647 2.30450 2.32167 2.82711 2.94960 3.01200 3.57632 3.66046 3.87821 3.98348 4.02548 4.08249 4.13709 4.21555 4.29303 4.33023 4.51524 4.59725 4.60859 4.67578 4.73042 4.76788 4.81621 4.85185 4.92324 4.93686 5.02785 5.05345 5.08811 5.26901 5.29302 5.42508 5.57495 5.66944 5.87140 5.95748 6.14937 6.17176 6.60895 6.68930 7.23233 7.41087 8.84188 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.007604 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.617920 B = 3681.266152 C = 4551.668898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.140 3.860 4 N -0.596 5.596 5 C 0.222 3.778 6 C -0.542 4.542 7 H 0.023 0.977 8 C 0.020 3.980 9 N -0.942 5.942 10 Si 0.938 3.062 11 H -0.258 1.258 12 H -0.284 1.284 13 H -0.237 1.237 14 C 0.526 3.474 15 O -0.573 6.573 16 C 0.059 3.941 17 H 0.068 0.932 18 C -0.115 4.115 19 C -0.130 4.130 20 C 0.044 3.956 21 N -0.495 5.495 22 C -0.018 4.018 23 C -0.134 4.134 24 C -0.176 4.176 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -12.848 0.957 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.017 3.983 4 N -0.327 5.327 5 C 0.100 3.900 6 C -0.581 4.581 7 H 0.042 0.958 8 C -0.179 4.179 9 N -0.581 5.581 10 Si 0.760 3.240 11 H -0.182 1.182 12 H -0.210 1.210 13 H -0.160 1.160 14 C 0.314 3.686 15 O -0.453 6.453 16 C -0.053 4.053 17 H 0.086 0.914 18 C -0.153 4.153 19 C -0.168 4.168 20 C -0.083 4.083 21 N -0.219 5.219 22 C -0.127 4.127 23 C -0.171 4.171 24 C -0.214 4.214 25 H 0.119 0.881 26 H 0.141 0.859 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.367 -13.000 -0.023 14.064 hybrid contribution -0.595 1.078 1.099 1.651 sum 4.771 -11.921 1.076 12.886 Atomic orbital electron populations 1.24047 0.94935 1.03136 0.98140 1.23141 0.96689 0.97618 1.02106 1.20463 0.91918 0.96292 0.89619 1.47931 1.09065 1.64413 1.11297 1.19600 0.96295 0.93301 0.80803 1.21515 1.42913 0.92711 1.00940 0.95844 1.25808 0.95161 0.95743 1.01218 1.70064 1.48886 1.10755 1.28411 0.85855 0.79514 0.79725 0.78940 1.18243 1.20956 1.15952 1.20651 0.82151 0.75473 0.90320 1.90543 1.76047 1.51935 1.26791 1.22453 0.88879 1.00661 0.93293 0.91371 1.22694 0.99796 0.93870 0.98934 1.22793 0.92556 1.03493 0.97957 1.22922 0.96281 0.95842 0.93220 1.62859 0.99936 1.07424 1.51689 1.22646 0.99967 0.91701 0.98392 1.23071 0.89058 1.03497 1.01516 1.22950 1.04030 0.99751 0.94645 0.88097 0.85915 0.87638 0.90769 0.91126 0.93851 0.93612 0.92248 0.90488 0.89342 0.87598 0.90574 0.89651 0.90986 0.90867 0.87328 0.86685 0.89285 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 14.32 67.79 0.97 -3.22 16 2 C -0.18 -5.48 9.84 25.65 0.25 -5.23 16 3 C 0.14 5.37 5.95 85.63 0.51 5.88 16 4 N -0.60 -25.45 2.44 -830.50 -2.03 -27.48 16 5 C 0.22 9.80 3.90 85.63 0.33 10.13 16 6 C -0.54 -29.60 9.74 25.60 0.25 -29.35 16 7 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 8 C 0.02 1.07 5.47 84.65 0.46 1.53 16 9 N -0.94 -56.26 13.96 21.45 0.30 -55.96 16 10 Si 0.94 39.61 27.47 68.60 1.88 41.49 16 11 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.24 -8.95 6.54 99.48 0.65 -8.30 16 14 C 0.53 22.83 6.96 87.66 0.61 23.44 16 15 O -0.57 -27.58 16.05 -3.04 -0.05 -27.63 16 16 C 0.06 2.20 1.85 44.64 0.08 2.29 16 17 H 0.07 2.91 6.35 -2.39 -0.02 2.90 16 18 C -0.11 -3.30 6.20 31.98 0.20 -3.10 16 19 C -0.13 -2.90 6.94 31.78 0.22 -2.68 16 20 C 0.04 1.11 6.57 86.65 0.57 1.68 16 21 N -0.49 -16.99 4.56 -839.79 -3.83 -20.82 16 22 C -0.02 -0.61 5.00 44.94 0.22 -0.39 16 23 C -0.13 -3.47 9.64 30.59 0.29 -3.18 16 24 C -0.18 -5.91 10.46 30.62 0.32 -5.59 16 25 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 26 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.07 2.89 7.76 -2.39 -0.02 2.87 16 29 H 0.07 2.87 7.21 -2.39 -0.02 2.86 16 30 H 0.04 1.84 7.13 -2.39 -0.02 1.83 16 31 H 0.05 1.88 4.58 -2.39 -0.01 1.87 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.08 2.21 8.05 -2.38 -0.02 2.19 16 34 H 0.09 2.40 7.03 -2.39 -0.02 2.39 16 35 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.62 7.23 -2.39 -0.02 1.60 16 39 H 0.07 2.75 7.75 -2.39 -0.02 2.74 16 40 H 0.11 2.54 8.12 -2.39 -0.02 2.52 16 41 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -68.62 348.47 2.49 -66.13 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.91 Total: 32.06 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.30 Total: -7.79 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.56 Total: -104.26 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.88 Total: 41.49 kcal Total: -68.62 2.49 -66.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293661252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.172 kcal (2) G-P(sol) polarization free energy of solvation -68.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds