Wall clock time and date at job start Tue Mar 31 2020 00:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53006 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47079 * 55.00029 * 4 3 2 6 6 O 1.42896 * 109.46873 * 294.99712 * 4 3 2 7 7 C 1.52998 * 109.46892 * 174.99974 * 4 3 2 8 8 N 1.46896 * 109.47472 * 187.03744 * 7 4 3 9 9 C 1.46900 * 111.00396 * 157.96772 * 8 7 4 10 10 C 1.50697 * 109.46882 * 288.24164 * 9 8 7 11 11 H 1.07998 * 120.00665 * 3.00208 * 10 9 8 12 12 C 1.37879 * 120.00013 * 183.00383 * 10 9 8 13 13 N 1.31513 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00396 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46829 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47063 * 119.99646 * 14 12 10 17 17 H 1.48499 * 109.46902 * 239.99773 * 14 12 10 18 18 C 1.46899 * 110.99862 * 281.92266 * 8 7 4 19 19 C 1.50708 * 109.47156 * 165.16498 * 18 8 7 20 20 C 1.38227 * 119.61244 * 94.98013 * 19 18 8 21 21 C 1.38629 * 119.15733 * 179.79272 * 20 19 18 22 22 C 1.38678 * 118.41776 * 0.47190 * 21 20 19 23 23 C 1.38174 * 119.16369 * 359.50577 * 22 21 20 24 24 N 1.31852 * 119.62132 * 275.00243 * 19 18 8 25 25 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46875 * 299.99986 * 1 2 3 27 27 H 1.08997 * 109.47314 * 59.99981 * 1 2 3 28 28 H 1.08996 * 109.46966 * 239.99598 * 2 1 3 29 29 H 1.09006 * 109.47117 * 119.99906 * 2 1 3 30 30 H 1.09002 * 109.47184 * 60.00203 * 3 2 1 31 31 H 1.09002 * 109.47208 * 299.99518 * 3 2 1 32 32 H 0.96696 * 114.00413 * 299.99703 * 6 4 3 33 33 H 1.09006 * 109.47481 * 67.03340 * 7 4 3 34 34 H 1.09004 * 109.47431 * 307.03830 * 7 4 3 35 35 H 1.08997 * 109.47056 * 48.24010 * 9 8 7 36 36 H 1.08996 * 109.46976 * 168.24530 * 9 8 7 37 37 H 0.96999 * 120.00595 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47383 * 45.17112 * 18 8 7 39 39 H 1.09000 * 109.47196 * 285.16844 * 18 8 7 40 40 H 1.07998 * 120.42650 * 359.97438 * 20 19 18 41 41 H 1.08008 * 120.79107 * 180.23002 * 21 20 19 42 42 H 1.08004 * 120.41213 * 179.78792 * 22 21 20 43 43 H 1.08002 * 119.61736 * 180.25570 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0800 2.8794 -0.1264 8 7 5.5391 2.8681 -0.2963 9 6 6.0054 4.1105 -0.9265 10 6 5.5996 4.1205 -2.3778 11 1 5.0087 3.3105 -2.7790 12 6 5.9828 5.1640 -3.1935 13 7 6.7020 6.1507 -2.7050 14 14 5.4793 5.1769 -4.9924 15 1 4.6792 3.9621 -5.2911 16 1 4.6648 6.3873 -5.2697 17 1 6.6941 5.1913 -5.8463 18 6 6.2168 2.6424 0.9872 19 6 7.6571 2.2759 0.7372 20 6 8.6279 3.2594 0.7707 21 6 9.9503 2.9111 0.5437 22 6 10.2470 1.5822 0.2804 23 6 9.2233 0.6544 0.2635 24 7 7.9766 1.0211 0.4886 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7619 1.3472 2.0131 33 1 3.8235 3.4362 0.7749 34 1 3.6172 3.3549 -0.9912 35 1 5.5590 4.9653 -0.4185 36 1 7.0912 4.1701 -0.8524 37 1 6.9713 6.8850 -3.2787 38 1 5.7229 1.8305 1.5211 39 1 6.1720 3.5516 1.5867 40 1 8.3599 4.2856 0.9742 41 1 10.7306 3.6575 0.5674 42 1 11.2660 1.2758 0.0955 43 1 9.4465 -0.3832 0.0634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294970211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:00 Heat of formation + Delta-G solvation = -25.610593 kcal Electronic energy + Delta-G solvation = -22047.560100 eV Core-core repulsion = 18899.238383 eV Total energy + Delta-G solvation = -3148.321717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.73270 -38.19633 -35.74782 -33.93807 -32.62300 -31.96997 -31.34662 -29.46220 -27.43769 -26.16707 -24.15519 -23.06826 -22.06109 -21.42713 -20.94143 -19.93273 -16.59708 -16.31791 -16.03522 -15.80627 -15.61090 -15.15915 -14.71340 -14.45499 -14.19440 -13.94645 -13.40026 -13.23961 -12.86858 -12.77541 -12.65960 -12.13649 -11.91158 -11.84891 -11.43526 -11.27257 -11.16395 -11.05040 -10.83142 -10.74724 -10.61597 -10.52859 -10.33657 -10.02335 -9.42452 -9.26368 -9.08277 -8.82393 -8.50492 -8.37853 -7.20515 -6.03010 -4.03181 1.58660 1.77980 3.29840 3.37584 3.42669 4.20769 4.44252 4.67305 4.81534 4.88053 5.11192 5.16806 5.21921 5.23218 5.32017 5.39042 5.49138 5.54955 5.62704 5.68939 5.76396 5.83275 5.93453 5.99035 6.02644 6.06251 6.16025 6.19078 6.26746 6.40610 6.44342 6.50154 6.61514 6.65073 6.68085 7.17030 7.27912 7.30345 7.82178 8.00593 8.11334 8.22233 8.53761 8.59036 9.04412 9.60601 11.07753 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.007130 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.925249 B = 3926.269098 C = 6336.779834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.112 3.888 5 H 0.105 0.895 6 O -0.552 6.552 7 C 0.035 3.965 8 N -0.520 5.520 9 C 0.185 3.815 10 C -0.501 4.501 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.087 3.913 19 C 0.159 3.841 20 C -0.158 4.158 21 C -0.079 4.079 22 C -0.187 4.187 23 C 0.091 3.909 24 N -0.463 5.463 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.361 0.639 33 H 0.022 0.978 34 H 0.092 0.908 35 H -0.013 1.013 36 H 0.038 0.962 37 H 0.260 0.740 38 H 0.107 0.893 39 H 0.031 0.969 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 -8.239 8.934 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.189 4.189 4 C 0.053 3.947 5 H 0.123 0.877 6 O -0.356 6.356 7 C -0.094 4.094 8 N -0.244 5.244 9 C 0.060 3.940 10 C -0.540 4.540 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.041 4.041 19 C 0.020 3.980 20 C -0.178 4.178 21 C -0.105 4.105 22 C -0.207 4.207 23 C -0.066 4.066 24 N -0.172 5.172 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.207 0.793 33 H 0.040 0.960 34 H 0.110 0.890 35 H 0.005 0.995 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.779 -9.505 8.126 12.810 hybrid contribution 0.190 2.094 -0.355 2.132 sum -2.589 -7.411 7.771 11.046 Atomic orbital electron populations 1.21791 0.96475 1.01155 1.01519 1.21442 0.94942 0.96837 1.02468 1.22311 0.96907 0.97176 1.02493 1.22110 0.90693 0.94605 0.87337 0.87701 1.86639 1.76359 1.57182 1.15442 1.22676 0.90270 0.95514 1.00929 1.61930 1.02926 1.40035 1.19522 1.19898 0.96519 0.83548 0.94042 1.21188 1.32876 1.05881 0.94071 0.91933 1.24968 0.95354 0.95589 0.98679 1.69957 1.37715 1.10398 1.35836 0.86494 0.78325 0.77857 0.85094 1.19635 1.21137 1.21069 1.21297 0.89783 1.00236 0.92805 1.21166 0.96011 0.88257 0.92522 1.22055 0.93602 1.00757 1.01403 1.21480 0.96584 0.96187 0.96239 1.22005 1.00599 0.94442 1.03687 1.22663 0.88210 0.99613 0.96106 1.67495 1.20040 1.19402 1.10279 0.93121 0.93082 0.92907 0.92075 0.91575 0.92174 0.91005 0.79336 0.95986 0.89012 0.99499 0.94437 0.93077 0.87491 0.95130 0.85160 0.85458 0.85612 0.83493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.39 5.83 -26.73 -0.16 -1.55 16 3 C -0.15 -1.90 4.89 -26.73 -0.13 -2.03 16 4 C 0.11 1.74 3.18 -26.73 -0.09 1.65 16 5 H 0.11 1.89 8.14 -51.93 -0.42 1.46 16 6 O -0.55 -8.20 10.17 -35.23 -0.36 -8.56 16 7 C 0.03 0.64 4.62 -3.83 -0.02 0.62 16 8 N -0.52 -11.22 4.32 -237.52 -1.03 -12.24 16 9 C 0.18 4.76 4.56 -4.98 -0.02 4.74 16 10 C -0.50 -14.06 8.37 -34.44 -0.29 -14.35 16 11 H 0.06 1.76 7.62 -52.49 -0.40 1.36 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.09 1.65 5.08 -4.97 -0.03 1.63 16 19 C 0.16 3.10 5.84 -82.58 -0.48 2.62 16 20 C -0.16 -2.88 8.18 -39.44 -0.32 -3.20 16 21 C -0.08 -1.25 10.18 -39.27 -0.40 -1.65 16 22 C -0.19 -2.75 10.11 -39.44 -0.40 -3.15 16 23 C 0.09 1.48 11.18 -17.56 -0.20 1.28 16 24 N -0.46 -8.98 10.27 -9.47 -0.10 -9.08 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.36 4.07 8.89 45.56 0.41 4.48 16 33 H 0.02 0.37 7.96 -51.93 -0.41 -0.04 16 34 H 0.09 1.85 6.97 -51.93 -0.36 1.49 16 35 H -0.01 -0.35 8.06 -51.93 -0.42 -0.76 16 36 H 0.04 1.03 5.76 -51.93 -0.30 0.73 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.11 1.89 5.02 -51.93 -0.26 1.63 16 39 H 0.03 0.55 7.97 -51.93 -0.41 0.14 16 40 H 0.13 2.33 7.91 -52.49 -0.42 1.92 16 41 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -31.98 349.76 -9.10 -41.07 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.35 Total: 5.65 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.25 Total: -13.08 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.39 Total: -47.12 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.36 Total: -8.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.98 -9.10 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294970211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.463 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds