Wall clock time and date at job start Tue Mar 31 2020 00:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53006 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47079 * 55.00029 * 4 3 2 6 6 O 1.42896 * 109.46873 * 294.99712 * 4 3 2 7 7 C 1.52998 * 109.46892 * 174.99974 * 4 3 2 8 8 N 1.46896 * 109.47472 * 187.03744 * 7 4 3 9 9 C 1.46900 * 111.00396 * 157.96772 * 8 7 4 10 10 C 1.50697 * 109.46882 * 288.24164 * 9 8 7 11 11 H 1.07998 * 120.00665 * 3.00208 * 10 9 8 12 12 C 1.37879 * 120.00013 * 183.00383 * 10 9 8 13 13 N 1.31513 * 119.99972 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00396 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46829 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47063 * 119.99646 * 14 12 10 17 17 H 1.48499 * 109.46902 * 239.99773 * 14 12 10 18 18 C 1.46899 * 110.99862 * 281.92266 * 8 7 4 19 19 C 1.50708 * 109.47156 * 165.16498 * 18 8 7 20 20 C 1.38227 * 119.61244 * 94.98013 * 19 18 8 21 21 C 1.38629 * 119.15733 * 179.79272 * 20 19 18 22 22 C 1.38678 * 118.41776 * 0.47190 * 21 20 19 23 23 C 1.38174 * 119.16369 * 359.50577 * 22 21 20 24 24 N 1.31852 * 119.62132 * 275.00243 * 19 18 8 25 25 H 1.08996 * 109.47373 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46875 * 299.99986 * 1 2 3 27 27 H 1.08997 * 109.47314 * 59.99981 * 1 2 3 28 28 H 1.08996 * 109.46966 * 239.99598 * 2 1 3 29 29 H 1.09006 * 109.47117 * 119.99906 * 2 1 3 30 30 H 1.09002 * 109.47184 * 60.00203 * 3 2 1 31 31 H 1.09002 * 109.47208 * 299.99518 * 3 2 1 32 32 H 0.96696 * 114.00413 * 299.99703 * 6 4 3 33 33 H 1.09006 * 109.47481 * 67.03340 * 7 4 3 34 34 H 1.09004 * 109.47431 * 307.03830 * 7 4 3 35 35 H 1.08997 * 109.47056 * 48.24010 * 9 8 7 36 36 H 1.08996 * 109.46976 * 168.24530 * 9 8 7 37 37 H 0.96999 * 120.00595 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47383 * 45.17112 * 18 8 7 39 39 H 1.09000 * 109.47196 * 285.16844 * 18 8 7 40 40 H 1.07998 * 120.42650 * 359.97438 * 20 19 18 41 41 H 1.08008 * 120.79107 * 180.23002 * 21 20 19 42 42 H 1.08004 * 120.41213 * 179.78792 * 22 21 20 43 43 H 1.08002 * 119.61736 * 180.25570 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8729 1.2201 7 6 4.0800 2.8794 -0.1264 8 7 5.5391 2.8681 -0.2963 9 6 6.0054 4.1105 -0.9265 10 6 5.5996 4.1205 -2.3778 11 1 5.0087 3.3105 -2.7790 12 6 5.9828 5.1640 -3.1935 13 7 6.7020 6.1507 -2.7050 14 14 5.4793 5.1769 -4.9924 15 1 4.6792 3.9621 -5.2911 16 1 4.6648 6.3873 -5.2697 17 1 6.6941 5.1913 -5.8463 18 6 6.2168 2.6424 0.9872 19 6 7.6571 2.2759 0.7372 20 6 8.6279 3.2594 0.7707 21 6 9.9503 2.9111 0.5437 22 6 10.2470 1.5822 0.2804 23 6 9.2233 0.6544 0.2635 24 7 7.9766 1.0211 0.4886 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7619 1.3472 2.0131 33 1 3.8235 3.4362 0.7749 34 1 3.6172 3.3549 -0.9912 35 1 5.5590 4.9653 -0.4185 36 1 7.0912 4.1701 -0.8524 37 1 6.9713 6.8850 -3.2787 38 1 5.7229 1.8305 1.5211 39 1 6.1720 3.5516 1.5867 40 1 8.3599 4.2856 0.9742 41 1 10.7306 3.6575 0.5674 42 1 11.2660 1.2758 0.0955 43 1 9.4465 -0.3832 0.0634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294970211.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:59 Heat of formation + Delta-G solvation = -47.610402 kcal Electronic energy + Delta-G solvation = -22048.514083 eV Core-core repulsion = 18899.238383 eV Total energy + Delta-G solvation = -3149.275700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08043 -39.54046 -37.26921 -35.00024 -34.65479 -33.31789 -32.71924 -30.77058 -29.31585 -27.42064 -25.86921 -24.38297 -23.63711 -22.68620 -22.07348 -21.49861 -18.59361 -17.68678 -17.27389 -17.24291 -16.94050 -16.63716 -16.34958 -15.90344 -15.64963 -15.20621 -14.84205 -14.43203 -14.26136 -14.09746 -14.01012 -13.84542 -13.41057 -13.11593 -12.93616 -12.68551 -12.62249 -12.56183 -12.34165 -12.28997 -12.05141 -12.00802 -11.57621 -11.47003 -11.28321 -10.72852 -10.62273 -10.48775 -10.16675 -9.79770 -8.93080 -8.20204 -6.28679 0.27188 0.48088 1.36893 1.38343 1.51276 2.38524 2.85666 3.12032 3.38212 3.51516 3.61369 3.90634 4.05846 4.07919 4.14348 4.21149 4.24678 4.33365 4.34995 4.50840 4.57936 4.67379 4.72880 4.76246 4.86609 4.91511 4.97317 5.05248 5.06545 5.14803 5.23413 5.27141 5.29939 5.34062 5.36013 5.49966 5.52908 5.65914 5.90004 6.08746 6.41535 6.64647 6.86636 6.96144 7.23464 7.39972 8.90296 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009263 B = 0.007130 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.925249 B = 3926.269098 C = 6336.779834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.128 3.872 5 H 0.077 0.923 6 O -0.559 6.559 7 C 0.035 3.965 8 N -0.531 5.531 9 C 0.203 3.797 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.961 3.039 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.280 1.280 18 C 0.091 3.909 19 C 0.131 3.869 20 C -0.180 4.180 21 C -0.083 4.083 22 C -0.175 4.175 23 C 0.081 3.919 24 N -0.493 5.493 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.379 0.621 33 H 0.038 0.962 34 H 0.068 0.932 35 H -0.039 1.039 36 H 0.016 0.984 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 -9.410 8.826 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.180 4.180 4 C 0.068 3.932 5 H 0.095 0.905 6 O -0.366 6.366 7 C -0.093 4.093 8 N -0.255 5.255 9 C 0.077 3.923 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.206 1.206 18 C -0.037 4.037 19 C -0.007 4.007 20 C -0.200 4.200 21 C -0.109 4.109 22 C -0.194 4.194 23 C -0.077 4.077 24 N -0.202 5.202 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.056 0.944 34 H 0.087 0.913 35 H -0.022 1.022 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.050 0.950 40 H 0.138 0.862 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.734 -10.681 8.044 13.648 hybrid contribution 0.262 2.414 -0.253 2.442 sum -2.472 -8.267 7.792 11.626 Atomic orbital electron populations 1.21759 0.94876 1.01995 1.01962 1.21405 0.96286 0.95725 1.01972 1.22219 0.94285 0.98263 1.03191 1.21778 0.92540 0.91839 0.86994 0.90472 1.86593 1.76738 1.57355 1.15914 1.22739 0.88357 0.97695 1.00537 1.61876 1.04855 1.37440 1.21343 1.19515 0.94934 0.84507 0.93362 1.21452 1.32905 1.05822 0.95389 0.92630 1.25808 0.95233 0.95120 1.03155 1.70071 1.38599 1.10999 1.37501 0.85455 0.78124 0.78242 0.79563 1.19041 1.20106 1.20619 1.21313 0.90164 1.00628 0.91549 1.21209 0.96227 0.88947 0.94279 1.22125 0.95001 1.00178 1.02736 1.21887 0.96098 0.97713 0.95207 1.22450 1.02284 0.93409 1.01297 1.23303 0.87598 1.01553 0.95209 1.67462 1.22048 1.19319 1.11411 0.92133 0.92163 0.92942 0.93112 0.91582 0.90316 0.91444 0.77271 0.94423 0.91331 1.02181 0.96613 0.92797 0.86229 0.94987 0.86196 0.82755 0.81399 0.80372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.56 5.83 30.59 0.18 -2.38 16 3 C -0.14 -3.43 4.89 30.60 0.15 -3.28 16 4 C 0.13 3.98 3.18 30.60 0.10 4.08 16 5 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 6 O -0.56 -16.17 10.17 -148.98 -1.51 -17.69 16 7 C 0.04 1.32 4.62 86.30 0.40 1.71 16 8 N -0.53 -23.72 4.32 -905.37 -3.91 -27.63 16 9 C 0.20 10.92 4.56 85.56 0.39 11.31 16 10 C -0.52 -29.86 8.37 25.60 0.21 -29.64 16 11 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 12 C 0.00 0.28 5.46 84.66 0.46 0.74 16 13 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 14 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 C 0.09 3.56 5.08 85.56 0.44 4.00 16 19 C 0.13 5.22 5.84 42.56 0.25 5.47 16 20 C -0.18 -6.72 8.18 22.36 0.18 -6.54 16 21 C -0.08 -2.54 10.18 22.47 0.23 -2.31 16 22 C -0.17 -4.69 10.11 22.36 0.23 -4.47 16 23 C 0.08 2.47 11.18 84.67 0.95 3.42 16 24 N -0.49 -19.01 10.27 -183.89 -1.89 -20.90 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.46 7.82 -2.38 -0.02 1.44 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.38 7.96 8.89 -74.06 -0.66 7.30 16 33 H 0.04 1.28 7.96 -2.38 -0.02 1.26 16 34 H 0.07 2.88 6.97 -2.38 -0.02 2.86 16 35 H -0.04 -2.27 8.06 -2.39 -0.02 -2.29 16 36 H 0.02 0.91 5.76 -2.39 -0.01 0.90 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.12 4.27 5.02 -2.39 -0.01 4.26 16 39 H 0.03 1.21 7.97 -2.39 -0.02 1.19 16 40 H 0.12 4.57 7.91 -2.91 -0.02 4.54 16 41 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 42 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -70.47 349.76 0.19 -70.29 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.32 Total: 24.47 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.87 Total: -19.84 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -5.52 Total: -104.25 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.51 Total: -17.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -70.47 0.19 -70.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294970211.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.675 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds