Wall clock time and date at job start Tue Mar 31 2020 01:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50708 * 119.99749 * 2 1 4 4 N 1.46495 * 109.46981 * 125.00329 * 3 2 1 5 5 C 1.46758 * 124.35204 * 89.99762 * 4 3 2 6 6 C 1.54478 * 105.47707 * 197.01342 * 5 4 3 7 7 C 1.54628 * 101.76513 * 334.58679 * 6 5 4 8 8 H 1.09005 * 110.48557 * 143.47466 * 7 6 5 9 9 N 1.46897 * 110.48673 * 265.98280 * 7 6 5 10 10 C 1.46897 * 110.99973 * 63.29603 * 9 7 6 11 11 C 1.50701 * 109.47058 * 274.20031 * 10 9 7 12 12 H 1.08009 * 119.99539 * 3.13755 * 11 10 9 13 13 C 1.37874 * 120.00714 * 183.13117 * 11 10 9 14 14 N 1.31510 * 120.00674 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99520 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47111 * 89.99462 * 15 13 11 17 17 H 1.48499 * 109.47143 * 210.00024 * 15 13 11 18 18 H 1.48498 * 109.46769 * 329.99818 * 15 13 11 19 19 C 1.46897 * 110.99826 * 187.24670 * 9 7 6 20 20 C 1.53001 * 109.47038 * 163.90922 * 19 9 7 21 21 C 1.53000 * 117.50035 * 243.18908 * 20 19 9 22 22 C 1.52998 * 60.00156 * 252.50719 * 21 20 19 23 23 C 1.34430 * 124.34818 * 269.69919 * 4 3 2 24 24 O 1.21278 * 124.93968 * 359.57407 * 23 4 3 25 25 H 1.07999 * 119.99547 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99719 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00295 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46953 * 245.00167 * 3 2 1 29 29 H 1.08997 * 109.46969 * 4.99928 * 3 2 1 30 30 H 1.08994 * 110.24847 * 316.01849 * 5 4 3 31 31 H 1.09002 * 110.24718 * 78.01690 * 5 4 3 32 32 H 1.09006 * 110.96567 * 92.70555 * 6 5 4 33 33 H 1.08997 * 110.97527 * 216.43271 * 6 5 4 34 34 H 1.09004 * 109.47367 * 34.19713 * 10 9 7 35 35 H 1.08995 * 109.47490 * 154.20360 * 10 9 7 36 36 H 0.97000 * 120.00396 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47444 * 283.90658 * 19 9 7 38 38 H 1.09002 * 109.47658 * 43.90916 * 19 9 7 39 39 H 1.09001 * 115.55098 * 28.89246 * 20 19 9 40 40 H 1.08999 * 117.49694 * 359.97438 * 21 20 19 41 41 H 1.08992 * 117.50208 * 145.02089 * 21 20 19 42 42 H 1.08994 * 117.50227 * 252.51191 * 22 21 20 43 43 H 1.09001 * 117.51973 * 107.47454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3792 0.8509 1.0759 6 6 4.8116 0.6689 2.5477 7 6 3.8801 1.6657 3.2755 8 1 3.5722 1.2646 4.2412 9 7 4.5489 2.9621 3.4484 10 6 4.8457 3.5788 2.1486 11 6 6.1647 3.0605 1.6362 12 1 6.7020 2.3070 2.1931 13 6 6.6857 3.5479 0.4564 14 7 7.8371 3.0960 0.0095 15 14 5.7568 4.8516 -0.5066 16 1 6.1812 6.1998 -0.0511 17 1 6.0524 4.7022 -1.9542 18 1 4.2983 4.6889 -0.2798 19 6 3.7450 3.8615 4.2865 20 6 4.6177 5.0194 4.7749 21 6 4.8455 5.1453 6.2826 22 6 3.9318 6.1383 5.5615 23 6 2.6899 1.8057 2.3522 24 8 1.6169 2.2745 2.6680 25 1 -0.5399 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0896 30 1 4.4269 -0.1016 0.5482 31 1 5.0149 1.5874 0.5844 32 1 4.6299 -0.3519 2.8843 33 1 5.8581 0.9418 2.6835 34 1 4.0568 3.3287 1.4392 35 1 4.9009 4.6612 2.2641 36 1 8.2037 3.4393 -0.8203 37 1 2.9127 4.2550 3.7028 38 1 3.3588 3.3108 5.1442 39 1 5.4402 5.2985 4.1163 40 1 4.3733 4.4035 6.9266 41 1 5.8180 5.5071 6.6162 42 1 4.3032 7.1532 5.4206 43 1 2.8587 6.0496 5.7306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337196976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:05 Heat of formation + Delta-G solvation = 36.543269 kcal Electronic energy + Delta-G solvation = -23158.189806 eV Core-core repulsion = 20012.563283 eV Total energy + Delta-G solvation = -3145.626523 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47230 -37.49015 -36.10604 -35.59675 -33.62985 -32.59932 -30.39770 -28.49500 -26.70340 -25.96200 -24.02119 -22.14648 -21.94044 -20.86185 -19.84366 -19.63912 -18.60645 -17.13571 -16.52721 -16.07701 -15.43744 -15.25975 -14.53993 -14.20805 -13.99919 -13.89766 -13.46339 -13.20411 -12.95705 -12.75196 -12.47808 -12.32255 -12.01894 -11.79367 -11.47067 -11.26492 -11.25765 -11.00688 -10.81644 -10.61772 -10.52577 -10.25323 -10.12765 -9.81219 -9.71754 -9.52718 -9.37329 -9.09239 -8.69495 -8.11245 -7.42280 -6.15307 -4.09242 2.22581 3.05817 3.20382 3.29230 3.33889 3.65135 4.12830 4.32729 4.57233 4.91837 5.00669 5.12153 5.16241 5.19780 5.23562 5.30749 5.46942 5.53336 5.61739 5.74818 5.80202 5.87599 5.89410 5.95087 6.00143 6.17528 6.19603 6.24042 6.26056 6.39173 6.59707 6.63626 6.71167 6.74658 6.81084 6.85340 7.05151 7.06978 7.57091 7.62482 7.75778 7.87038 8.54442 8.68284 8.94630 9.45452 10.95649 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.008529 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.869635 B = 3282.220791 C = 4665.619884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.166 4.166 3 C 0.149 3.851 4 N -0.607 5.607 5 C 0.086 3.914 6 C -0.119 4.119 7 C 0.064 3.936 8 H 0.098 0.902 9 N -0.494 5.494 10 C 0.145 3.855 11 C -0.497 4.497 12 H 0.092 0.908 13 C 0.072 3.928 14 N -0.894 5.894 15 Si 0.859 3.141 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.084 3.916 20 C -0.134 4.134 21 C -0.175 4.175 22 C -0.190 4.190 23 C 0.493 3.507 24 O -0.551 6.551 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.005 0.995 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 -3.414 3.546 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 C 0.026 3.974 4 N -0.340 5.340 5 C -0.035 4.035 6 C -0.156 4.156 7 C -0.048 4.048 8 H 0.116 0.884 9 N -0.218 5.218 10 C 0.018 3.982 11 C -0.535 4.535 12 H 0.109 0.891 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.686 3.314 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.044 4.044 20 C -0.152 4.152 21 C -0.212 4.212 22 C -0.228 4.228 23 C 0.280 3.720 24 O -0.429 6.429 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.023 0.977 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.253 -3.229 3.727 9.614 hybrid contribution -1.221 0.894 -1.175 1.916 sum -9.473 -2.334 2.552 10.085 Atomic orbital electron populations 1.23815 0.95861 1.01725 1.00489 1.23341 0.96220 0.99036 0.99918 1.20381 0.92121 0.95294 0.89561 1.48431 1.13593 1.61396 1.10581 1.22791 0.81032 1.00776 0.98915 1.22691 1.03227 0.96512 0.93195 1.22502 0.91070 0.93655 0.97570 0.88437 1.62327 1.40624 1.01584 1.17268 1.20549 0.97613 0.94871 0.85134 1.21088 1.02886 1.23492 1.06068 0.89059 1.24845 0.94680 0.96108 0.97389 1.69864 1.17984 1.43351 1.22054 0.87103 0.81091 0.83374 0.79797 1.20139 1.21144 1.19302 1.21654 0.93437 0.92660 0.96699 1.22317 1.01898 0.96954 0.94056 1.22924 1.00568 1.02297 0.95458 1.22945 0.98481 0.95229 1.06106 1.22111 0.89298 0.76472 0.84140 1.90614 1.26750 1.46443 1.79086 0.88553 0.88559 0.87273 0.89680 0.90299 0.92329 0.85935 0.91774 0.86136 0.97706 0.95851 0.92580 0.94490 0.91626 0.86709 0.89232 0.89198 0.89230 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.26 9.85 -36.02 -0.35 -2.61 16 3 C 0.15 2.36 6.37 -5.19 -0.03 2.33 16 4 N -0.61 -11.04 2.27 -173.79 -0.39 -11.44 16 5 C 0.09 1.53 6.29 -3.13 -0.02 1.51 16 6 C -0.12 -2.02 6.18 -25.10 -0.16 -2.18 16 7 C 0.06 1.19 3.14 -67.72 -0.21 0.97 16 8 H 0.10 1.64 7.91 -51.93 -0.41 1.23 16 9 N -0.49 -9.90 4.36 -228.10 -1.00 -10.90 16 10 C 0.14 3.28 2.95 -4.98 -0.01 3.26 16 11 C -0.50 -12.31 6.31 -34.44 -0.22 -12.53 16 12 H 0.09 2.41 5.96 -52.48 -0.31 2.10 16 13 C 0.07 1.88 5.13 -17.82 -0.09 1.78 16 14 N -0.89 -24.82 13.96 55.43 0.77 -24.05 16 15 Si 0.86 20.36 27.41 -169.99 -4.66 15.70 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.34 6.63 56.52 0.37 -5.97 16 19 C 0.08 1.54 4.72 -3.83 -0.02 1.52 16 20 C -0.13 -2.27 5.50 -90.62 -0.50 -2.77 16 21 C -0.18 -2.48 10.18 -26.73 -0.27 -2.75 16 22 C -0.19 -2.69 10.25 -26.73 -0.27 -2.97 16 23 C 0.49 9.83 5.67 -10.85 -0.06 9.77 16 24 O -0.55 -12.33 16.95 5.56 0.09 -12.23 16 25 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 26 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.33 7.57 -51.93 -0.39 0.93 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 2.60 4.84 -51.93 -0.25 2.35 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 2.30 5.55 -51.93 -0.29 2.01 16 34 H 0.01 0.13 4.29 -51.93 -0.22 -0.10 16 35 H 0.02 0.56 5.81 -51.93 -0.30 0.25 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.04 0.75 7.49 -51.93 -0.39 0.36 16 38 H 0.07 1.12 7.57 -51.93 -0.39 0.72 16 39 H 0.11 2.20 7.08 -51.93 -0.37 1.83 16 40 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -28.67 335.87 -8.63 -37.30 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.70 Total: 7.04 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.81 Total: -6.48 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.62 Total: -46.38 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.66 Total: 15.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.67 -8.63 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337196976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.842 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds