Wall clock time and date at job start Tue Mar 31 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50708 * 119.99749 * 2 1 4 4 N 1.46495 * 109.46981 * 125.00329 * 3 2 1 5 5 C 1.46758 * 124.35204 * 89.99762 * 4 3 2 6 6 C 1.54478 * 105.47707 * 197.01342 * 5 4 3 7 7 C 1.54628 * 101.76513 * 334.58679 * 6 5 4 8 8 H 1.09005 * 110.48557 * 143.47466 * 7 6 5 9 9 N 1.46897 * 110.48673 * 265.98280 * 7 6 5 10 10 C 1.46897 * 110.99973 * 63.29603 * 9 7 6 11 11 C 1.50701 * 109.47058 * 274.20031 * 10 9 7 12 12 H 1.08009 * 119.99539 * 3.13755 * 11 10 9 13 13 C 1.37874 * 120.00714 * 183.13117 * 11 10 9 14 14 N 1.31510 * 120.00674 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99520 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47111 * 89.99462 * 15 13 11 17 17 H 1.48499 * 109.47143 * 210.00024 * 15 13 11 18 18 H 1.48498 * 109.46769 * 329.99818 * 15 13 11 19 19 C 1.46897 * 110.99826 * 187.24670 * 9 7 6 20 20 C 1.53001 * 109.47038 * 163.90922 * 19 9 7 21 21 C 1.53000 * 117.50035 * 243.18908 * 20 19 9 22 22 C 1.52998 * 60.00156 * 252.50719 * 21 20 19 23 23 C 1.34430 * 124.34818 * 269.69919 * 4 3 2 24 24 O 1.21278 * 124.93968 * 359.57407 * 23 4 3 25 25 H 1.07999 * 119.99547 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.99719 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00295 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46953 * 245.00167 * 3 2 1 29 29 H 1.08997 * 109.46969 * 4.99928 * 3 2 1 30 30 H 1.08994 * 110.24847 * 316.01849 * 5 4 3 31 31 H 1.09002 * 110.24718 * 78.01690 * 5 4 3 32 32 H 1.09006 * 110.96567 * 92.70555 * 6 5 4 33 33 H 1.08997 * 110.97527 * 216.43271 * 6 5 4 34 34 H 1.09004 * 109.47367 * 34.19713 * 10 9 7 35 35 H 1.08995 * 109.47490 * 154.20360 * 10 9 7 36 36 H 0.97000 * 120.00396 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.47444 * 283.90658 * 19 9 7 38 38 H 1.09002 * 109.47658 * 43.90916 * 19 9 7 39 39 H 1.09001 * 115.55098 * 28.89246 * 20 19 9 40 40 H 1.08999 * 117.49694 * 359.97438 * 21 20 19 41 41 H 1.08992 * 117.50208 * 145.02089 * 21 20 19 42 42 H 1.08994 * 117.50227 * 252.51191 * 22 21 20 43 43 H 1.09001 * 117.51973 * 107.47454 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3792 0.8509 1.0759 6 6 4.8116 0.6689 2.5477 7 6 3.8801 1.6657 3.2755 8 1 3.5722 1.2646 4.2412 9 7 4.5489 2.9621 3.4484 10 6 4.8457 3.5788 2.1486 11 6 6.1647 3.0605 1.6362 12 1 6.7020 2.3070 2.1931 13 6 6.6857 3.5479 0.4564 14 7 7.8371 3.0960 0.0095 15 14 5.7568 4.8516 -0.5066 16 1 6.1812 6.1998 -0.0511 17 1 6.0524 4.7022 -1.9542 18 1 4.2983 4.6889 -0.2798 19 6 3.7450 3.8615 4.2865 20 6 4.6177 5.0194 4.7749 21 6 4.8455 5.1453 6.2826 22 6 3.9318 6.1383 5.5615 23 6 2.6899 1.8057 2.3522 24 8 1.6169 2.2745 2.6680 25 1 -0.5399 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0896 30 1 4.4269 -0.1016 0.5482 31 1 5.0149 1.5874 0.5844 32 1 4.6299 -0.3519 2.8843 33 1 5.8581 0.9418 2.6835 34 1 4.0568 3.3287 1.4392 35 1 4.9009 4.6612 2.2641 36 1 8.2037 3.4393 -0.8203 37 1 2.9127 4.2550 3.7028 38 1 3.3588 3.3108 5.1442 39 1 5.4402 5.2985 4.1163 40 1 4.3733 4.4035 6.9266 41 1 5.8180 5.5071 6.6162 42 1 4.3032 7.1532 5.4206 43 1 2.8587 6.0496 5.7306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337196976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:04 Heat of formation + Delta-G solvation = 19.645089 kcal Electronic energy + Delta-G solvation = -23158.922566 eV Core-core repulsion = 20012.563283 eV Total energy + Delta-G solvation = -3146.359283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.98988 -38.86022 -37.65884 -36.91714 -34.96061 -34.53002 -31.75008 -30.35400 -28.15680 -27.24853 -25.66213 -23.72012 -23.16786 -22.29969 -21.12641 -20.91959 -20.09869 -19.03428 -18.04168 -17.60779 -16.95922 -16.59482 -16.11587 -15.74124 -15.35527 -15.25325 -14.88764 -14.66140 -14.51068 -14.38947 -14.04194 -13.84802 -13.61059 -13.44649 -12.87762 -12.67820 -12.51552 -12.36817 -12.34873 -12.14227 -12.06470 -11.92099 -11.76795 -11.32597 -11.11623 -10.97561 -10.80446 -10.70549 -10.45471 -9.60539 -9.05539 -8.20785 -6.14909 1.16557 1.27130 1.33789 1.39516 1.51928 2.28566 2.33793 2.83895 3.10435 3.16428 3.51397 3.70190 3.90657 3.92266 4.06235 4.09345 4.21200 4.21925 4.34553 4.35151 4.49141 4.59883 4.62240 4.72283 4.76871 4.79515 4.88424 4.92098 4.95307 4.96708 5.05919 5.30253 5.33219 5.38839 5.49417 5.56794 5.60496 5.66200 5.74487 5.98034 6.16890 6.27888 6.59723 6.89072 7.15904 7.41439 8.92817 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.008529 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.869635 B = 3282.220791 C = 4665.619884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.178 4.178 3 C 0.142 3.858 4 N -0.604 5.604 5 C 0.088 3.912 6 C -0.110 4.110 7 C 0.060 3.940 8 H 0.119 0.881 9 N -0.500 5.500 10 C 0.159 3.841 11 C -0.476 4.476 12 H 0.073 0.927 13 C 0.033 3.967 14 N -0.931 5.931 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.271 1.271 19 C 0.091 3.909 20 C -0.166 4.166 21 C -0.157 4.157 22 C -0.176 4.176 23 C 0.487 3.513 24 O -0.581 6.581 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.099 0.901 34 H -0.005 1.005 35 H 0.010 0.990 36 H 0.264 0.736 37 H 0.013 0.987 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -4.244 4.469 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C 0.020 3.980 4 N -0.336 5.336 5 C -0.034 4.034 6 C -0.148 4.148 7 C -0.052 4.052 8 H 0.137 0.863 9 N -0.223 5.223 10 C 0.032 3.968 11 C -0.514 4.514 12 H 0.091 0.909 13 C -0.166 4.166 14 N -0.572 5.572 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.196 1.196 19 C -0.037 4.037 20 C -0.185 4.185 21 C -0.194 4.194 22 C -0.213 4.213 23 C 0.274 3.726 24 O -0.462 6.462 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.013 0.987 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.419 -4.063 4.639 11.258 hybrid contribution -0.899 1.129 -1.433 2.034 sum -10.318 -2.934 3.205 11.196 Atomic orbital electron populations 1.24030 0.95580 1.02713 0.98380 1.23241 0.96544 0.98141 1.01766 1.20548 0.91885 0.96429 0.89118 1.48542 1.13883 1.60493 1.10682 1.22653 0.80244 1.00967 0.99506 1.22651 1.01468 0.98134 0.92539 1.22676 0.90779 0.93079 0.98648 0.86336 1.62303 1.41728 1.02473 1.15804 1.20251 0.96118 0.94040 0.86377 1.21127 1.03030 1.22049 1.05197 0.90892 1.25309 0.95227 0.97681 0.98381 1.69951 1.19462 1.45001 1.22757 0.86365 0.79893 0.81487 0.79031 1.20307 1.20658 1.19592 1.21632 0.92707 0.92928 0.96408 1.22166 1.02158 0.98397 0.95746 1.23020 1.01190 1.02084 0.93086 1.23034 0.99095 0.95127 1.04039 1.22313 0.89163 0.76236 0.84909 1.90588 1.27938 1.47888 1.79751 0.89125 0.86002 0.85770 0.88834 0.91862 0.89389 0.89511 0.88087 0.88287 0.98700 0.97173 0.92639 0.96891 0.89957 0.89544 0.87784 0.88201 0.88135 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 14.32 67.77 0.97 -2.86 16 2 C -0.18 -4.49 9.85 25.64 0.25 -4.24 16 3 C 0.14 4.40 6.37 85.64 0.55 4.95 16 4 N -0.60 -21.51 2.27 -822.34 -1.86 -23.37 16 5 C 0.09 3.03 6.29 86.83 0.55 3.58 16 6 C -0.11 -3.61 6.18 31.65 0.20 -3.41 16 7 C 0.06 2.15 3.14 44.91 0.14 2.29 16 8 H 0.12 3.72 7.91 -2.38 -0.02 3.71 16 9 N -0.50 -19.96 4.36 -875.56 -3.82 -23.78 16 10 C 0.16 7.33 2.95 85.56 0.25 7.59 16 11 C -0.48 -24.01 6.31 25.60 0.16 -23.85 16 12 H 0.07 3.94 5.96 -2.91 -0.02 3.93 16 13 C 0.03 1.73 5.13 84.65 0.43 2.16 16 14 N -0.93 -52.62 13.96 21.45 0.30 -52.32 16 15 Si 0.91 42.66 27.41 68.60 1.88 44.54 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.27 -12.75 6.63 99.48 0.66 -12.09 16 19 C 0.09 3.32 4.72 86.30 0.41 3.72 16 20 C -0.17 -5.55 5.50 -10.79 -0.06 -5.61 16 21 C -0.16 -4.08 10.18 30.59 0.31 -3.77 16 22 C -0.18 -4.65 10.25 30.59 0.31 -4.34 16 23 C 0.49 19.09 5.67 87.90 0.50 19.59 16 24 O -0.58 -25.87 16.95 -3.02 -0.05 -25.92 16 25 H 0.09 2.15 7.84 -2.91 -0.02 2.12 16 26 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 27 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.14 7.57 -2.39 -0.02 2.12 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.09 3.71 4.84 -2.39 -0.01 3.70 16 32 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.10 3.75 5.55 -2.39 -0.01 3.73 16 34 H 0.00 -0.22 4.29 -2.38 -0.01 -0.23 16 35 H 0.01 0.50 5.81 -2.39 -0.01 0.48 16 36 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.01 0.53 7.49 -2.38 -0.02 0.51 16 38 H 0.08 2.68 7.57 -2.39 -0.02 2.66 16 39 H 0.09 3.38 7.08 -2.39 -0.02 3.37 16 40 H 0.10 2.42 8.03 -2.39 -0.02 2.40 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -62.31 335.87 2.36 -59.95 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.94 Total: 25.10 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.97 Total: -4.19 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -5.39 Total: -99.47 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -62.31 2.36 -59.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337196976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.597 kcal (2) G-P(sol) polarization free energy of solvation -62.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds