Wall clock time and date at job start Tue Mar 31 2020 01:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00161 * 2 1 4 4 N 1.46497 * 109.47060 * 124.99908 * 3 2 1 5 5 C 1.46773 * 124.34741 * 90.00307 * 4 3 2 6 6 C 1.54479 * 105.47028 * 197.01836 * 5 4 3 7 7 C 1.54632 * 101.76711 * 334.58218 * 6 5 4 8 8 H 1.08998 * 110.48485 * 266.11999 * 7 6 5 9 9 N 1.46898 * 110.48471 * 143.61068 * 7 6 5 10 10 C 1.46900 * 110.99908 * 50.05214 * 9 7 6 11 11 C 1.50701 * 109.46964 * 190.00072 * 10 9 7 12 12 H 1.07998 * 120.00124 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00066 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00196 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00074 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46983 * 120.00202 * 15 13 11 18 18 H 1.48503 * 109.47404 * 240.00075 * 15 13 11 19 19 C 1.46897 * 110.99857 * 174.00004 * 9 7 6 20 20 C 1.52994 * 109.47260 * 294.29191 * 19 9 7 21 21 C 1.53011 * 117.49810 * 242.81270 * 20 19 9 22 22 C 1.53009 * 117.49897 * 174.15666 * 20 19 9 23 23 C 1.34414 * 124.35203 * 269.70460 * 4 3 2 24 24 O 1.21283 * 124.94228 * 359.57140 * 23 4 3 25 25 H 1.08001 * 119.99882 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00308 * 179.97438 * 1 2 3 27 27 H 1.07991 * 119.99971 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47465 * 245.00747 * 3 2 1 29 29 H 1.09003 * 109.47184 * 5.00432 * 3 2 1 30 30 H 1.08994 * 110.24057 * 316.01628 * 5 4 3 31 31 H 1.08998 * 110.24155 * 77.93203 * 5 4 3 32 32 H 1.08993 * 110.97065 * 92.70443 * 6 5 4 33 33 H 1.09008 * 110.96317 * 216.43035 * 6 5 4 34 34 H 1.08997 * 109.47196 * 309.99466 * 10 9 7 35 35 H 1.09000 * 109.47714 * 69.99519 * 10 9 7 36 36 H 0.96991 * 120.00049 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.46934 * 54.29270 * 19 9 7 38 38 H 1.08999 * 109.47045 * 174.28914 * 19 9 7 39 39 H 1.08993 * 115.55574 * 28.48484 * 20 19 9 40 40 H 1.08999 * 117.49729 * 0.02562 * 21 20 19 41 41 H 1.08998 * 117.49325 * 145.02184 * 21 20 19 42 42 H 1.08996 * 117.49734 * 214.97436 * 22 20 19 43 43 H 1.08999 * 117.49581 * 359.97391 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3793 0.8507 1.0759 6 6 4.8115 0.6686 2.5478 7 6 3.8800 1.6654 3.2756 8 1 4.3755 2.6280 3.4018 9 7 3.4675 1.1262 4.5783 10 6 4.6290 0.6574 5.3457 11 6 4.1565 -0.1057 6.5563 12 1 3.0991 -0.2297 6.7376 13 6 5.0741 -0.6456 7.4323 14 7 6.3618 -0.4942 7.2118 15 14 4.4884 -1.5910 8.9332 16 1 3.0038 -1.6180 8.9529 17 1 5.0077 -2.9811 8.8763 18 1 4.9882 -0.9259 10.1633 19 6 2.6996 2.1201 5.3401 20 6 3.6054 3.3003 5.6969 21 6 3.8603 3.5719 7.1810 22 6 2.9569 4.5088 6.3752 23 6 2.6899 1.8055 2.3521 24 8 1.6169 2.2744 2.6680 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0896 30 1 4.4268 -0.1018 0.5482 31 1 5.0146 1.5866 0.5831 32 1 4.6298 -0.3520 2.8843 33 1 5.8581 0.9415 2.6835 34 1 5.2386 0.0053 4.7203 35 1 5.2232 1.5136 5.6651 36 1 7.0073 -0.8738 7.8283 37 1 1.8632 2.4733 4.7368 38 1 2.3207 1.6635 6.2544 39 1 4.4234 3.4919 5.0025 40 1 3.3830 2.9094 7.9030 41 1 4.8459 3.9424 7.4627 42 1 3.3487 5.4953 6.1273 43 1 1.8849 4.4632 6.5668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337196977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:08 Heat of formation + Delta-G solvation = 27.489459 kcal Electronic energy + Delta-G solvation = -22613.550289 eV Core-core repulsion = 19467.531163 eV Total energy + Delta-G solvation = -3146.019126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31628 -37.64395 -36.16401 -35.37926 -34.01367 -32.42289 -30.42046 -27.64466 -26.75704 -26.14320 -24.08349 -22.34021 -21.73200 -20.91636 -20.30612 -19.47170 -18.58350 -16.59489 -16.48503 -16.16122 -15.33889 -15.29287 -14.61186 -14.29947 -14.15923 -13.84705 -13.55432 -13.29926 -13.18769 -12.79590 -12.25674 -12.16315 -11.98961 -11.62206 -11.36474 -11.24950 -11.05727 -10.96889 -10.89006 -10.72561 -10.65107 -10.52508 -9.97424 -9.84404 -9.62604 -9.33166 -9.14025 -8.81922 -8.54428 -8.39686 -7.20431 -6.00305 -3.99162 2.12476 2.96951 3.32128 3.33227 3.40153 3.45670 4.42298 4.46577 4.65507 4.79942 4.88071 4.95138 5.11177 5.25061 5.31533 5.35848 5.38961 5.44274 5.59759 5.60270 5.62166 5.66763 5.77221 5.88383 6.08312 6.17584 6.20945 6.40474 6.50508 6.54142 6.54430 6.56517 6.64850 6.74690 6.78642 7.05881 7.28249 7.33716 7.42629 7.82968 8.08699 8.21805 8.54540 8.57467 9.07782 9.64006 11.10768 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.005484 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.039078 B = 5104.101216 C = 5802.967452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.175 4.175 3 C 0.155 3.845 4 N -0.622 5.622 5 C 0.105 3.895 6 C -0.125 4.125 7 C 0.049 3.951 8 H 0.070 0.930 9 N -0.513 5.513 10 C 0.189 3.811 11 C -0.497 4.497 12 H 0.061 0.939 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.085 3.915 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.191 4.191 23 C 0.534 3.466 24 O -0.524 6.524 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.002 0.998 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 4.642 -13.291 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C 0.033 3.967 4 N -0.357 5.357 5 C -0.018 4.018 6 C -0.163 4.163 7 C -0.063 4.063 8 H 0.087 0.913 9 N -0.237 5.237 10 C 0.064 3.936 11 C -0.535 4.535 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.539 5.539 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.043 4.043 20 C -0.188 4.188 21 C -0.197 4.197 22 C -0.229 4.229 23 C 0.322 3.678 24 O -0.399 6.399 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.651 4.432 -13.191 14.672 hybrid contribution 0.548 0.045 1.011 1.151 sum -4.103 4.477 -12.179 13.609 Atomic orbital electron populations 1.23847 0.95881 1.01931 0.99388 1.23286 0.96360 0.98918 1.00825 1.20381 0.91923 0.95833 0.88523 1.48239 1.12967 1.63189 1.11326 1.22113 0.81650 0.99468 0.98571 1.22746 0.99610 1.01945 0.91954 1.22221 0.93199 0.98221 0.92643 0.91309 1.62376 1.26069 1.34174 1.01032 1.19862 0.86540 0.94810 0.92358 1.21121 0.93203 1.32654 1.06570 0.92080 1.24902 0.94805 0.96581 0.98041 1.69953 1.00394 1.46124 1.37445 0.86535 0.78970 0.79642 0.82856 1.19728 1.21142 1.21188 1.21910 0.95239 0.88408 0.98724 1.22898 1.02089 0.97854 0.95914 1.22862 0.99917 1.02111 0.94853 1.22902 0.98818 0.94442 1.06698 1.20950 0.88895 0.75591 0.82370 1.90601 1.26271 1.45405 1.77594 0.88467 0.88403 0.87237 0.89964 0.89914 0.90666 0.91540 0.88345 0.89417 0.94843 0.98047 0.93148 0.90008 0.90155 0.89178 0.88553 0.89825 0.90012 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 14.32 29.01 0.42 -1.51 16 2 C -0.17 -2.03 9.85 -36.03 -0.35 -2.39 16 3 C 0.16 1.80 6.37 -5.19 -0.03 1.76 16 4 N -0.62 -8.75 2.92 -173.78 -0.51 -9.26 16 5 C 0.11 1.23 7.35 -3.12 -0.02 1.21 16 6 C -0.12 -1.88 5.29 -25.10 -0.13 -2.01 16 7 C 0.05 0.89 2.50 -67.72 -0.17 0.72 16 8 H 0.07 1.23 6.18 -51.93 -0.32 0.90 16 9 N -0.51 -11.07 4.56 -228.10 -1.04 -12.11 16 10 C 0.19 4.64 4.24 -4.98 -0.02 4.62 16 11 C -0.50 -13.55 8.54 -34.44 -0.29 -13.85 16 12 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.09 1.79 5.28 -3.83 -0.02 1.77 16 20 C -0.17 -3.21 4.01 -90.61 -0.36 -3.57 16 21 C -0.16 -2.99 10.18 -26.69 -0.27 -3.26 16 22 C -0.19 -3.14 10.25 -26.69 -0.27 -3.41 16 23 C 0.53 9.58 7.63 -10.86 -0.08 9.49 16 24 O -0.52 -10.90 15.24 5.56 0.08 -10.81 16 25 H 0.10 1.05 7.84 -52.49 -0.41 0.64 16 26 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.02 7.57 -51.93 -0.39 0.62 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.68 7.30 -51.93 -0.38 1.30 16 33 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 34 H 0.03 0.85 6.07 -51.93 -0.32 0.54 16 35 H 0.00 0.05 6.73 -51.93 -0.35 -0.30 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.08 1.74 5.72 -51.93 -0.30 1.44 16 38 H 0.08 1.81 6.64 -51.93 -0.34 1.46 16 39 H 0.09 1.73 6.23 -51.93 -0.32 1.41 16 40 H 0.10 1.89 8.03 -51.93 -0.42 1.47 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -31.02 344.96 -9.13 -40.15 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.86 Total: 4.38 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.72 Total: -8.93 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.81 Total: -46.48 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.02 -9.13 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337196977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.639 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds