Wall clock time and date at job start Tue Mar 31 2020 01:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00161 * 2 1 4 4 N 1.46497 * 109.47060 * 124.99908 * 3 2 1 5 5 C 1.46773 * 124.34741 * 90.00307 * 4 3 2 6 6 C 1.54479 * 105.47028 * 197.01836 * 5 4 3 7 7 C 1.54632 * 101.76711 * 334.58218 * 6 5 4 8 8 H 1.08998 * 110.48485 * 266.11999 * 7 6 5 9 9 N 1.46898 * 110.48471 * 143.61068 * 7 6 5 10 10 C 1.46900 * 110.99908 * 50.05214 * 9 7 6 11 11 C 1.50701 * 109.46964 * 190.00072 * 10 9 7 12 12 H 1.07998 * 120.00124 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00066 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00196 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00074 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47137 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46983 * 120.00202 * 15 13 11 18 18 H 1.48503 * 109.47404 * 240.00075 * 15 13 11 19 19 C 1.46897 * 110.99857 * 174.00004 * 9 7 6 20 20 C 1.52994 * 109.47260 * 294.29191 * 19 9 7 21 21 C 1.53011 * 117.49810 * 242.81270 * 20 19 9 22 22 C 1.53009 * 117.49897 * 174.15666 * 20 19 9 23 23 C 1.34414 * 124.35203 * 269.70460 * 4 3 2 24 24 O 1.21283 * 124.94228 * 359.57140 * 23 4 3 25 25 H 1.08001 * 119.99882 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00308 * 179.97438 * 1 2 3 27 27 H 1.07991 * 119.99971 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47465 * 245.00747 * 3 2 1 29 29 H 1.09003 * 109.47184 * 5.00432 * 3 2 1 30 30 H 1.08994 * 110.24057 * 316.01628 * 5 4 3 31 31 H 1.08998 * 110.24155 * 77.93203 * 5 4 3 32 32 H 1.08993 * 110.97065 * 92.70443 * 6 5 4 33 33 H 1.09008 * 110.96317 * 216.43035 * 6 5 4 34 34 H 1.08997 * 109.47196 * 309.99466 * 10 9 7 35 35 H 1.09000 * 109.47714 * 69.99519 * 10 9 7 36 36 H 0.96991 * 120.00049 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.46934 * 54.29270 * 19 9 7 38 38 H 1.08999 * 109.47045 * 174.28914 * 19 9 7 39 39 H 1.08993 * 115.55574 * 28.48484 * 20 19 9 40 40 H 1.08999 * 117.49729 * 0.02562 * 21 20 19 41 41 H 1.08998 * 117.49325 * 145.02184 * 21 20 19 42 42 H 1.08996 * 117.49734 * 214.97436 * 22 20 19 43 43 H 1.08999 * 117.49581 * 359.97391 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3793 0.8507 1.0759 6 6 4.8115 0.6686 2.5478 7 6 3.8800 1.6654 3.2756 8 1 4.3755 2.6280 3.4018 9 7 3.4675 1.1262 4.5783 10 6 4.6290 0.6574 5.3457 11 6 4.1565 -0.1057 6.5563 12 1 3.0991 -0.2297 6.7376 13 6 5.0741 -0.6456 7.4323 14 7 6.3618 -0.4942 7.2118 15 14 4.4884 -1.5910 8.9332 16 1 3.0038 -1.6180 8.9529 17 1 5.0077 -2.9811 8.8763 18 1 4.9882 -0.9259 10.1633 19 6 2.6996 2.1201 5.3401 20 6 3.6054 3.3003 5.6969 21 6 3.8603 3.5719 7.1810 22 6 2.9569 4.5088 6.3752 23 6 2.6899 1.8055 2.3521 24 8 1.6169 2.2744 2.6680 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0896 30 1 4.4268 -0.1018 0.5482 31 1 5.0146 1.5866 0.5831 32 1 4.6298 -0.3520 2.8843 33 1 5.8581 0.9415 2.6835 34 1 5.2386 0.0053 4.7203 35 1 5.2232 1.5136 5.6651 36 1 7.0073 -0.8738 7.8283 37 1 1.8632 2.4733 4.7368 38 1 2.3207 1.6635 6.2544 39 1 4.4234 3.4919 5.0025 40 1 3.3830 2.9094 7.9030 41 1 4.8459 3.9424 7.4627 42 1 3.3487 5.4953 6.1273 43 1 1.8849 4.4632 6.5668 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337196977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:08 Heat of formation + Delta-G solvation = 8.587090 kcal Electronic energy + Delta-G solvation = -22614.369957 eV Core-core repulsion = 19467.531163 eV Total energy + Delta-G solvation = -3146.838794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64358 -39.16980 -37.50469 -36.75085 -35.30514 -34.36212 -31.64933 -29.49231 -28.14577 -27.34015 -25.77548 -23.90586 -23.16621 -22.38059 -21.52786 -20.69433 -19.96124 -18.29978 -17.86874 -17.68031 -16.92555 -16.54662 -16.29330 -15.70158 -15.41508 -15.26110 -14.95899 -14.62721 -14.38078 -14.21647 -14.17945 -13.56762 -13.32436 -13.02381 -12.84275 -12.70991 -12.60481 -12.44068 -12.40868 -12.32935 -12.12060 -12.06097 -11.88254 -11.43318 -11.07562 -10.91592 -10.52858 -10.51568 -10.24984 -9.66853 -8.92803 -8.14098 -6.19306 1.18847 1.39392 1.41699 1.53107 1.61330 2.23989 2.44036 2.96235 3.19914 3.36636 3.45137 3.69644 3.86173 3.97399 4.03196 4.13734 4.16841 4.17633 4.22166 4.43018 4.49997 4.59850 4.71807 4.74458 4.76918 4.83618 4.98146 5.01164 5.02841 5.06141 5.19999 5.27829 5.31130 5.39680 5.44140 5.62159 5.66855 5.71365 5.79995 6.10207 6.15269 6.37183 6.66817 6.93980 7.23127 7.47897 8.96611 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.005484 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.039078 B = 5104.101216 C = 5802.967452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.186 4.186 3 C 0.152 3.848 4 N -0.613 5.613 5 C 0.111 3.889 6 C -0.122 4.122 7 C 0.043 3.957 8 H 0.071 0.929 9 N -0.526 5.526 10 C 0.210 3.790 11 C -0.510 4.510 12 H 0.047 0.953 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.951 3.049 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.094 3.906 20 C -0.184 4.184 21 C -0.172 4.172 22 C -0.158 4.158 23 C 0.527 3.473 24 O -0.562 6.562 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.023 0.977 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 4.870 -14.684 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.205 4.205 3 C 0.031 3.969 4 N -0.347 5.347 5 C -0.011 4.011 6 C -0.160 4.160 7 C -0.069 4.069 8 H 0.089 0.911 9 N -0.249 5.249 10 C 0.085 3.915 11 C -0.549 4.549 12 H 0.065 0.935 13 C -0.184 4.184 14 N -0.567 5.567 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.034 4.034 20 C -0.204 4.204 21 C -0.209 4.209 22 C -0.196 4.196 23 C 0.315 3.685 24 O -0.440 6.440 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.041 0.959 35 H -0.002 1.002 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.476 4.647 -14.628 15.987 hybrid contribution 0.474 -0.029 1.384 1.463 sum -4.002 4.618 -13.244 14.586 Atomic orbital electron populations 1.24023 0.96078 1.02512 0.98819 1.23384 0.96594 0.99159 1.01325 1.20621 0.91919 0.95493 0.88858 1.48319 1.14227 1.61468 1.10638 1.22298 0.80525 1.01918 0.96316 1.22712 0.99636 0.99610 0.94093 1.22343 0.94406 0.99039 0.91141 0.91141 1.62226 1.24902 1.35516 1.02292 1.19457 0.86986 0.93420 0.91639 1.21337 0.92576 1.33077 1.07872 0.93467 1.25593 0.94899 0.97374 1.00571 1.70040 1.01253 1.46952 1.38499 0.85604 0.78391 0.78564 0.79686 1.19727 1.20393 1.20573 1.21706 0.95442 0.88802 0.97422 1.22791 1.02521 0.98921 0.96159 1.22822 1.00765 1.03198 0.94161 1.22989 0.98991 0.94421 1.03156 1.20887 0.88150 0.75858 0.83621 1.90571 1.27451 1.47438 1.78561 0.88529 0.87351 0.86644 0.86119 0.90903 0.87954 0.88117 0.90722 0.88410 0.95887 1.00166 0.92903 0.90368 0.92732 0.89356 0.90235 0.89478 0.87373 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 14.32 67.78 0.97 -2.73 16 2 C -0.19 -3.95 9.85 25.65 0.25 -3.70 16 3 C 0.15 3.13 6.37 85.63 0.55 3.67 16 4 N -0.61 -15.95 2.92 -822.31 -2.40 -18.34 16 5 C 0.11 2.26 7.35 86.83 0.64 2.89 16 6 C -0.12 -3.58 5.29 31.65 0.17 -3.41 16 7 C 0.04 1.54 2.50 44.91 0.11 1.65 16 8 H 0.07 2.51 6.18 -2.39 -0.01 2.50 16 9 N -0.53 -23.37 4.56 -875.56 -3.99 -27.36 16 10 C 0.21 10.68 4.24 85.56 0.36 11.04 16 11 C -0.51 -28.61 8.54 25.60 0.22 -28.39 16 12 H 0.05 2.73 7.10 -2.91 -0.02 2.71 16 13 C 0.01 0.78 5.46 84.65 0.46 1.24 16 14 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 15 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C 0.09 4.09 5.28 86.30 0.46 4.54 16 20 C -0.18 -7.12 4.01 -10.79 -0.04 -7.16 16 21 C -0.17 -6.48 10.18 30.62 0.31 -6.17 16 22 C -0.16 -5.00 10.25 30.62 0.31 -4.69 16 23 C 0.53 18.64 7.63 87.90 0.67 19.32 16 24 O -0.56 -23.55 15.24 -3.04 -0.05 -23.60 16 25 H 0.10 2.01 7.84 -2.91 -0.02 1.99 16 26 H 0.11 2.00 8.06 -2.91 -0.02 1.97 16 27 H 0.12 2.31 8.06 -2.92 -0.02 2.29 16 28 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.68 7.57 -2.39 -0.02 1.66 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.55 7.30 -2.39 -0.02 2.53 16 33 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.02 1.21 6.07 -2.39 -0.01 1.20 16 35 H -0.02 -1.05 6.73 -2.39 -0.02 -1.07 16 36 H 0.26 14.41 8.31 -92.72 -0.77 13.64 16 37 H 0.08 3.43 5.72 -2.38 -0.01 3.42 16 38 H 0.05 2.58 6.64 -2.39 -0.02 2.57 16 39 H 0.09 3.43 6.23 -2.39 -0.01 3.42 16 40 H 0.08 3.23 8.03 -2.39 -0.02 3.21 16 41 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -68.29 344.96 2.29 -66.00 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.98 Total: 22.15 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.44 Total: -11.89 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -6.10 Total: -99.26 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.29 2.29 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337196977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.587 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds