Wall clock time and date at job start Tue Mar 31 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 N 1.46908 * 109.47134 * 119.99590 * 2 1 3 5 5 C 1.46894 * 110.99795 * 72.63869 * 4 2 1 6 6 C 1.52998 * 109.47437 * 66.04877 * 5 4 2 7 7 O 1.42905 * 109.46774 * 64.99518 * 6 5 4 8 8 C 1.42905 * 113.99890 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46867 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00384 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00083 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99844 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47455 * 89.99941 * 13 11 9 15 15 H 1.48506 * 109.46730 * 209.99831 * 13 11 9 16 16 H 1.48496 * 109.47493 * 329.99375 * 13 11 9 17 17 C 1.46907 * 110.99952 * 308.68997 * 4 2 1 18 18 C 1.50695 * 109.46994 * 199.81888 * 17 4 2 19 19 C 1.38674 * 120.41723 * 264.50783 * 18 17 4 20 20 C 1.38634 * 118.42037 * 180.24746 * 19 18 17 21 21 C 1.38233 * 119.15691 * 359.74395 * 20 19 18 22 22 N 1.31846 * 120.76381 * 0.02562 * 21 20 19 23 23 C 1.31883 * 121.72933 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47597 * 300.00244 * 1 2 3 25 25 H 1.09005 * 109.46956 * 60.00633 * 1 2 3 26 26 H 1.09006 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47661 * 239.99236 * 2 1 3 28 28 H 1.09007 * 109.46623 * 174.16825 * 3 2 1 29 29 H 1.08993 * 109.46968 * 294.15984 * 3 2 1 30 30 H 1.09002 * 109.47531 * 54.16851 * 3 2 1 31 31 H 1.09004 * 109.47326 * 186.04561 * 5 4 2 32 32 H 1.09006 * 109.47726 * 306.04674 * 5 4 2 33 33 H 1.09000 * 109.48008 * 184.99691 * 6 5 4 34 34 H 1.09001 * 109.46782 * 305.00501 * 6 5 4 35 35 H 1.09001 * 109.46882 * 300.00021 * 8 7 6 36 36 H 1.08997 * 109.47116 * 59.99832 * 8 7 6 37 37 H 0.97001 * 120.00162 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.47332 * 79.81309 * 17 4 2 39 39 H 1.09005 * 109.46826 * 319.81664 * 17 4 2 40 40 H 1.07997 * 120.78859 * 359.96501 * 19 18 17 41 41 H 1.07990 * 120.41721 * 179.72835 * 20 19 18 42 42 H 1.07998 * 119.61521 * 180.02562 * 21 20 19 43 43 H 1.08007 * 119.61683 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8093 -2.1423 1.0931 6 6 2.6812 -2.7030 -0.0322 7 8 4.0597 -2.5450 0.3097 8 6 4.9644 -3.0386 -0.6803 9 6 6.3822 -2.8222 -0.2177 10 1 6.5734 -2.3549 0.7370 11 6 7.4354 -3.2218 -1.0129 12 7 8.6727 -3.0326 -0.6095 13 14 7.1046 -4.0308 -2.6638 14 1 7.0273 -2.9888 -3.7191 15 1 8.2052 -4.9760 -2.9812 16 1 5.8186 -4.7709 -2.6037 17 6 1.3868 -0.1563 2.4121 18 6 2.2232 -0.5117 3.6142 19 6 1.9249 -1.6356 4.3697 20 6 2.7185 -1.9207 5.4701 21 6 3.7765 -1.0840 5.7723 22 7 4.0335 -0.0262 5.0285 23 6 3.3000 0.2756 3.9748 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1250 1.4442 0.1044 29 1 1.7645 1.9252 -0.9376 30 1 1.5939 1.9857 0.8332 31 1 2.0809 -2.6191 2.0350 32 1 0.7604 -2.3423 0.8740 33 1 2.4602 -3.7614 -0.1703 34 1 2.4721 -2.1644 -0.9565 35 1 4.7907 -4.1040 -0.8322 36 1 4.8025 -2.5068 -1.6179 37 1 9.4136 -3.3140 -1.1687 38 1 0.3910 -0.5857 2.5225 39 1 1.3082 0.9279 2.3318 40 1 1.0913 -2.2711 4.1097 41 1 2.5125 -2.7853 6.0835 42 1 4.3998 -1.2993 6.6276 43 1 3.5410 1.1508 3.3896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339055110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:30 Heat of formation + Delta-G solvation = -29.077987 kcal Electronic energy + Delta-G solvation = -22129.106042 eV Core-core repulsion = 18980.633968 eV Total energy + Delta-G solvation = -3148.472074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18221 -39.72412 -38.16246 -34.89504 -34.22723 -32.81872 -32.60894 -30.44929 -29.12511 -27.98784 -26.33713 -24.52114 -23.96260 -23.39440 -22.96636 -20.20711 -19.01772 -17.99686 -17.55563 -17.40361 -17.12809 -16.83174 -16.26511 -15.88807 -15.56550 -15.12795 -14.86292 -14.70350 -14.50547 -14.06991 -14.04320 -13.86453 -13.70811 -13.52353 -13.19383 -12.82653 -12.76565 -12.65054 -12.43958 -12.12143 -12.08624 -11.87492 -11.76559 -11.54881 -11.24305 -10.91978 -10.67255 -10.34378 -10.25908 -9.84610 -9.04490 -8.37403 -6.45224 0.24646 0.43037 1.30719 1.34778 1.45551 2.28415 2.77926 2.94762 3.10983 3.24689 3.62569 3.86589 3.93518 3.99917 4.14679 4.15238 4.18491 4.22899 4.33058 4.41768 4.51398 4.55105 4.57931 4.64276 4.66760 4.80363 4.83542 4.90197 4.93143 4.97327 5.02508 5.04879 5.16348 5.23566 5.31588 5.38383 5.44477 5.46959 5.86587 5.95038 6.22882 6.29785 6.59310 6.82709 7.12121 7.19639 8.80322 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.005321 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.740171 B = 5261.204668 C = 6456.253370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 C -0.140 4.140 4 N -0.541 5.541 5 C 0.064 3.936 6 C 0.051 3.949 7 O -0.392 6.392 8 C 0.182 3.818 9 C -0.542 4.542 10 H 0.022 0.978 11 C 0.011 3.989 12 N -0.944 5.944 13 Si 0.958 3.042 14 H -0.259 1.259 15 H -0.272 1.272 16 H -0.245 1.245 17 C 0.103 3.897 18 C -0.127 4.127 19 C -0.076 4.076 20 C -0.172 4.172 21 C 0.074 3.926 22 N -0.523 5.523 23 C 0.097 3.903 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.008 0.992 36 H 0.006 0.994 37 H 0.273 0.727 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.967 3.767 4.725 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.038 4.038 3 C -0.197 4.197 4 N -0.265 5.265 5 C -0.063 4.063 6 C -0.026 4.026 7 O -0.311 6.311 8 C 0.106 3.894 9 C -0.580 4.580 10 H 0.040 0.960 11 C -0.187 4.187 12 N -0.584 5.584 13 Si 0.779 3.221 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.169 1.169 17 C -0.024 4.024 18 C -0.129 4.129 19 C -0.103 4.103 20 C -0.191 4.191 21 C -0.083 4.083 22 N -0.232 5.232 23 C -0.059 4.059 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.508 4.462 5.109 22.552 hybrid contribution -0.648 -1.021 -0.940 1.532 sum -22.157 3.441 4.168 22.806 Atomic orbital electron populations 1.22407 0.95278 1.02379 1.03357 1.21796 0.94052 0.95468 0.92486 1.21807 1.00701 0.94813 1.02392 1.61976 1.59152 1.03292 1.02128 1.22119 0.97226 0.88329 0.98659 1.22754 0.82681 0.99029 0.98108 1.87993 1.15273 1.83005 1.44830 1.20236 0.88091 0.92927 0.88146 1.21144 0.90717 1.40770 1.05337 0.95953 1.25887 0.94029 0.95759 1.02984 1.70051 0.99628 1.48478 1.40199 0.85574 0.79367 0.79182 0.77966 1.18354 1.19698 1.16857 1.20983 0.94190 1.01252 0.85988 1.20957 0.97888 0.96398 0.97665 1.21835 0.99508 0.95253 0.93670 1.22433 0.96340 1.01494 0.98880 1.23168 0.96132 0.90365 0.98637 1.67618 1.29216 1.19590 1.06773 1.22710 0.90925 0.99596 0.92718 0.91306 0.91077 0.92266 0.91305 0.94359 0.91077 0.91480 0.91091 0.90381 0.92925 0.93387 0.97394 0.97642 0.91837 0.91397 0.88629 0.82662 0.81996 0.81333 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.50 71.98 0.61 -2.05 16 2 C 0.07 1.57 2.79 44.91 0.13 1.69 16 3 C -0.14 -3.05 9.09 71.98 0.65 -2.39 16 4 N -0.54 -14.29 4.30 -875.50 -3.77 -18.05 16 5 C 0.06 1.69 5.07 86.30 0.44 2.13 16 6 C 0.05 1.73 6.02 71.98 0.43 2.16 16 7 O -0.39 -18.93 10.27 -148.98 -1.53 -20.46 16 8 C 0.18 9.49 4.76 71.24 0.34 9.83 16 9 C -0.54 -34.52 9.99 25.60 0.26 -34.26 16 10 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 11 C 0.01 0.67 5.47 84.66 0.46 1.13 16 12 N -0.94 -61.41 13.96 21.45 0.30 -61.11 16 13 Si 0.96 44.55 27.47 68.60 1.88 46.44 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 17 C 0.10 2.15 3.68 85.55 0.32 2.47 16 18 C -0.13 -3.25 5.04 -19.78 -0.10 -3.35 16 19 C -0.08 -1.71 8.58 22.47 0.19 -1.52 16 20 C -0.17 -3.87 10.11 22.36 0.23 -3.65 16 21 C 0.07 2.02 11.18 84.69 0.95 2.96 16 22 N -0.52 -17.54 10.36 -195.84 -2.03 -19.56 16 23 C 0.10 3.03 10.88 84.67 0.92 3.95 16 24 H 0.07 0.90 6.68 -2.39 -0.02 0.88 16 25 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.06 0.85 6.69 -2.38 -0.02 0.83 16 27 H 0.07 1.80 5.93 -2.39 -0.01 1.78 16 28 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.22 6.58 -2.39 -0.02 1.20 16 31 H 0.07 2.01 6.36 -2.39 -0.02 1.99 16 32 H 0.08 1.49 6.54 -2.38 -0.02 1.47 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.52 6.13 -2.39 -0.01 1.51 16 35 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 36 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 37 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 38 H 0.07 1.08 7.26 -2.39 -0.02 1.06 16 39 H 0.10 1.79 6.00 -2.38 -0.01 1.77 16 40 H 0.16 2.49 8.01 -2.91 -0.02 2.47 16 41 H 0.16 2.51 8.06 -2.92 -0.02 2.48 16 42 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -79.04 342.34 1.60 -77.43 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.93 Total: 16.21 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 5.82 Total: -20.90 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -5.50 Total: -98.73 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.53 Total: -20.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -79.04 1.60 -77.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339055110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.354 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds