Wall clock time and date at job start Tue Mar 31 2020 00:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46612 * 2 1 4 4 C 1.52996 * 109.46949 * 119.99862 * 2 1 3 5 5 C 1.50702 * 109.47159 * 300.00134 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50697 * 109.46949 * 90.00203 * 8 7 5 10 10 H 1.08004 * 120.00186 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00081 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00096 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00103 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47135 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47061 * 119.99902 * 13 11 9 16 16 H 1.48503 * 109.47075 * 240.00004 * 13 11 9 17 17 C 1.46506 * 120.00264 * 0.28128 * 7 5 4 18 18 C 1.52998 * 109.47320 * 89.99349 * 17 7 5 19 19 C 1.47196 * 109.47171 * 180.02562 * 18 17 7 20 20 N 6.74938 * 127.84549 * 129.18040 * 2 1 3 21 21 C 1.52994 * 109.47465 * 239.99962 * 2 1 3 22 22 C 1.52999 * 117.49768 * 128.74291 * 21 2 1 23 23 C 1.53005 * 117.49709 * 60.08278 * 21 2 1 24 24 H 1.08994 * 109.47439 * 300.00090 * 1 2 3 25 25 H 1.09001 * 109.47432 * 60.00364 * 1 2 3 26 26 H 1.09008 * 109.46768 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46527 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46925 * 299.99946 * 3 2 1 29 29 H 1.09003 * 109.47167 * 60.00057 * 3 2 1 30 30 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 31 31 H 1.08994 * 109.47405 * 60.00167 * 4 2 1 32 32 H 1.09001 * 109.47567 * 210.00057 * 8 7 5 33 33 H 1.09005 * 109.47076 * 330.00563 * 8 7 5 34 34 H 0.96991 * 119.99957 * 180.02562 * 12 11 9 35 35 H 1.08994 * 109.46996 * 209.99677 * 17 7 5 36 36 H 1.09001 * 109.46578 * 329.99540 * 17 7 5 37 37 H 1.08997 * 109.47106 * 300.00561 * 18 17 7 38 38 H 1.09004 * 109.46895 * 60.00075 * 18 17 7 39 39 H 1.09000 * 115.55183 * 274.41955 * 21 2 1 40 40 H 1.09002 * 117.50063 * 0.02562 * 22 21 2 41 41 H 1.09003 * 117.49804 * 145.02570 * 22 21 2 42 42 H 1.08999 * 117.50068 * 214.97430 * 23 21 2 43 43 H 1.08996 * 117.49806 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5376 -0.0108 2.4797 6 8 0.8399 0.9750 2.3684 7 7 1.8585 -0.4745 3.7038 8 6 1.3652 0.2126 4.8999 9 6 0.0364 -0.3727 5.3032 10 1 -0.3971 -1.1764 4.7265 11 6 -0.6260 0.1179 6.4086 12 7 -0.0984 1.0969 7.1106 13 14 -2.2729 -0.6081 6.9089 14 1 -2.6456 -1.6893 5.9616 15 1 -2.1717 -1.1651 8.2817 16 1 -3.3109 0.4535 6.8807 17 6 2.7009 -1.6656 3.8383 18 6 4.1715 -1.2468 3.8920 19 6 5.0178 -2.4436 4.0266 20 7 5.6710 -3.3672 4.1314 21 6 2.0401 -0.7212 -1.2492 22 6 3.0764 0.0041 -2.1100 23 6 1.6374 -0.1483 -2.6096 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7488 1.2493 32 1 2.0800 0.0853 5.7130 33 1 1.2444 1.2744 4.6852 34 1 -0.5642 1.4416 7.8884 35 1 2.4397 -2.1936 4.7554 36 1 2.5410 -2.3220 2.9830 37 1 4.4326 -0.7188 2.9749 38 1 4.3313 -0.5903 4.7473 39 1 2.1254 -1.8046 -1.1647 40 1 3.3950 0.9949 -1.7861 41 1 3.8432 -0.6022 -2.5921 42 1 1.4584 -0.8547 -3.4201 43 1 1.0095 0.7426 -2.6145 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339097572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:34 Heat of formation + Delta-G solvation = -10.243867 kcal Electronic energy + Delta-G solvation = -22258.072121 eV Core-core repulsion = 19110.416755 eV Total energy + Delta-G solvation = -3147.655365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21945 -39.24239 -37.92286 -36.65297 -34.88589 -34.27433 -32.08513 -30.10093 -28.15568 -28.12472 -25.29034 -24.91469 -23.63143 -22.94335 -19.91624 -19.11567 -18.74265 -18.28380 -17.90348 -16.97426 -16.57491 -16.27221 -15.98866 -15.60819 -15.36682 -14.85208 -14.59671 -14.37510 -14.18750 -14.09359 -13.63160 -13.50400 -13.31943 -13.15021 -12.94526 -12.68560 -12.60590 -12.52054 -12.40786 -12.18896 -12.09369 -11.88832 -11.76889 -11.64926 -11.54437 -11.51381 -10.99815 -10.62902 -10.56649 -10.09461 -9.34402 -8.15584 -6.27421 1.39289 1.42078 1.52187 1.73095 1.86529 2.02356 2.36231 2.48846 3.04395 3.14694 3.19867 3.76928 3.85442 4.06056 4.10609 4.18071 4.19824 4.32225 4.39276 4.48680 4.58496 4.71247 4.76907 4.87108 4.90953 4.94204 4.96578 5.09106 5.13225 5.15666 5.23169 5.25452 5.29506 5.38808 5.41750 5.52442 5.63505 5.66742 5.76811 5.96772 6.17524 6.63184 6.81257 6.91688 7.39141 7.67569 8.90863 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.005629 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.698662 B = 4972.936725 C = 6510.715232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.012 4.012 3 C -0.150 4.150 4 C -0.123 4.123 5 C 0.501 3.499 6 O -0.569 6.569 7 N -0.602 5.602 8 C 0.260 3.740 9 C -0.535 4.535 10 H 0.052 0.948 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.955 3.045 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.285 1.285 17 C 0.114 3.886 18 C -0.038 4.038 19 C 0.246 3.754 20 N -0.490 5.490 21 C -0.144 4.144 22 C -0.177 4.177 23 C -0.182 4.182 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.030 0.970 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -4.297 -15.849 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 C -0.207 4.207 4 C -0.163 4.163 5 C 0.291 3.709 6 O -0.449 6.449 7 N -0.332 5.332 8 C 0.139 3.861 9 C -0.574 4.574 10 H 0.070 0.930 11 C -0.188 4.188 12 N -0.567 5.567 13 Si 0.781 3.219 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.212 1.212 17 C -0.011 4.011 18 C -0.079 4.079 19 C -0.071 4.071 20 N -0.168 5.168 21 C -0.162 4.162 22 C -0.214 4.214 23 C -0.219 4.219 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.140 -5.055 -15.581 18.291 hybrid contribution -1.417 0.380 0.834 1.688 sum 6.723 -4.675 -14.747 16.868 Atomic orbital electron populations 1.22002 0.95549 1.01123 1.01786 1.19694 0.94740 0.94793 0.91970 1.22128 1.00747 0.95886 1.01905 1.21865 1.03663 1.00374 0.90355 1.21268 0.79938 0.84473 0.85210 1.90564 1.39237 1.28767 1.86356 1.48133 1.49633 1.29009 1.06464 1.18751 0.93242 0.91946 0.82163 1.21785 1.05995 1.18713 1.10860 0.92979 1.25697 1.01138 0.95359 0.96574 1.70029 1.40374 1.27446 1.18849 0.85551 0.79825 0.78299 0.78235 1.19273 1.20002 1.21160 1.21478 0.87332 0.87274 1.04978 1.19842 0.90991 0.89288 1.07773 1.29168 0.92724 0.93876 0.91320 1.81249 1.11833 1.12702 1.11054 1.22285 1.04242 0.99167 0.90469 1.23197 0.92328 1.02601 1.03282 1.22959 0.98520 1.03235 0.97194 0.93042 0.92950 0.93193 0.91652 0.93112 0.92800 0.86227 0.87574 0.95240 0.97725 0.92689 0.90249 0.87614 0.84503 0.86398 0.86749 0.88366 0.87861 0.88088 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.02 71.98 0.58 -3.57 16 2 C -0.01 -0.27 0.62 -52.18 -0.03 -0.30 16 3 C -0.15 -3.76 6.77 71.98 0.49 -3.27 16 4 C -0.12 -2.77 3.30 29.85 0.10 -2.67 16 5 C 0.50 17.18 7.09 87.66 0.62 17.81 16 6 O -0.57 -25.03 10.93 -3.04 -0.03 -25.07 16 7 N -0.60 -21.04 2.46 -826.15 -2.03 -23.06 16 8 C 0.26 12.43 5.16 85.63 0.44 12.87 16 9 C -0.53 -28.70 9.39 25.60 0.24 -28.46 16 10 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 11 C 0.01 0.62 5.46 84.66 0.46 1.08 16 12 N -0.93 -53.75 13.29 21.45 0.28 -53.46 16 13 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 C 0.11 2.75 5.17 86.38 0.45 3.20 16 18 C -0.04 -0.68 6.03 28.79 0.17 -0.50 16 19 C 0.25 5.31 15.43 89.44 1.38 6.69 16 20 N -0.49 -13.49 18.54 20.00 0.37 -13.12 16 21 C -0.14 -2.50 5.14 -10.79 -0.06 -2.56 16 22 C -0.18 -2.69 9.57 30.62 0.29 -2.40 16 23 C -0.18 -3.02 9.39 30.62 0.29 -2.73 16 24 H 0.05 1.89 5.51 -2.39 -0.01 1.88 16 25 H 0.05 1.35 7.29 -2.39 -0.02 1.34 16 26 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.37 6.97 -2.39 -0.02 1.35 16 28 H 0.05 1.19 7.07 -2.39 -0.02 1.18 16 29 H 0.05 1.79 5.51 -2.39 -0.01 1.77 16 30 H 0.12 1.90 7.21 -2.38 -0.02 1.88 16 31 H 0.11 2.04 7.40 -2.39 -0.02 2.02 16 32 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.00 0.26 7.42 -2.38 -0.02 0.24 16 34 H 0.26 14.51 8.31 -92.72 -0.77 13.74 16 35 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.11 1.94 6.43 -2.39 -0.02 1.92 16 37 H 0.14 1.71 7.24 -2.39 -0.02 1.69 16 38 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.11 1.72 8.11 -2.39 -0.02 1.70 16 40 H 0.10 1.56 5.85 -2.39 -0.01 1.55 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.56 7.07 -2.39 -0.02 1.54 16 Total: -1.00 -69.61 346.54 7.04 -62.57 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.00 Total: 11.22 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.42 Total: -4.82 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -1.37 Total: -89.65 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.03 Total: -25.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.61 7.04 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.331 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds