Wall clock time and date at job start Tue Mar 31 2020 00:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.08992 * 109.47303 * 54.99820 * 3 2 1 5 5 C 1.53002 * 109.46817 * 295.00077 * 3 2 1 6 6 C 1.52997 * 109.47415 * 300.00127 * 5 3 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 3 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 5 9 9 C 1.52996 * 109.47131 * 175.00442 * 3 2 1 10 10 H 1.09000 * 109.47054 * 179.97438 * 9 3 2 11 11 C 1.50699 * 109.46861 * 299.99792 * 9 3 2 12 12 N 1.29947 * 126.28644 * 59.69094 * 11 9 3 13 13 O 1.21304 * 110.24703 * 179.84187 * 12 11 9 14 14 C 1.33641 * 109.81502 * 0.42535 * 13 12 11 15 15 C 1.50701 * 126.55482 * 179.76022 * 14 13 12 16 16 C 1.52998 * 109.46864 * 269.97504 * 15 14 13 17 17 C 1.50701 * 109.46864 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00490 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99725 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46948 * 59.99346 * 21 19 17 23 23 H 1.48494 * 109.47348 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47089 * 300.00163 * 21 19 17 25 25 N 1.31129 * 106.89535 * 359.73876 * 14 13 12 26 26 H 1.09009 * 109.47141 * 299.99934 * 1 2 3 27 27 H 1.08997 * 109.47855 * 59.99868 * 1 2 3 28 28 H 1.09004 * 109.47585 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46634 * 240.00096 * 2 1 3 30 30 H 1.09002 * 109.47159 * 120.00132 * 2 1 3 31 31 H 1.09000 * 109.46986 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47601 * 60.00732 * 5 3 2 33 33 H 1.09001 * 109.46922 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47140 * 59.99976 * 6 5 3 35 35 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 37 37 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 38 38 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46909 * 29.97223 * 15 14 13 40 40 H 1.08995 * 109.47179 * 149.97521 * 15 14 13 41 41 H 1.09001 * 109.47128 * 299.99584 * 16 15 14 42 42 H 1.09002 * 109.47400 * 59.99714 * 16 15 14 43 43 H 0.97003 * 119.99591 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.2452 1.3698 -2.4890 7 6 3.7701 1.3717 -2.3634 8 6 4.1748 0.6877 -1.0560 9 6 3.5648 1.4443 0.1256 10 1 3.9282 2.4719 0.1251 11 6 3.9635 0.7705 1.4133 12 7 3.6938 -0.4535 1.7564 13 8 4.1563 -0.6940 2.8517 14 6 4.7760 0.3893 3.3296 15 6 5.4763 0.5096 4.6587 16 6 4.4810 0.9869 5.7181 17 6 5.1813 1.1078 7.0470 18 1 6.2312 0.8679 7.1279 19 6 4.4817 1.5249 8.1595 20 7 3.2034 1.8176 8.0608 21 14 5.3497 1.6741 9.8069 22 1 6.4609 2.6528 9.6940 23 1 4.3837 2.1375 10.8351 24 1 5.8944 0.3501 10.2011 25 7 4.6588 1.3274 2.4210 26 1 -0.3634 0.5139 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.9989 3.1540 -1.3076 32 1 0.5489 2.1253 -1.3969 33 1 1.9571 1.8575 -3.4203 34 1 1.8818 0.3422 -2.4890 35 1 4.2046 0.8330 -3.2054 36 1 4.1334 2.3993 -2.3634 37 1 3.8114 -0.3400 -1.0560 38 1 5.2611 0.6894 -0.9663 39 1 5.8765 -0.4622 4.9477 40 1 6.2915 1.2283 4.5760 41 1 4.0807 1.9587 5.4290 42 1 3.6656 0.2682 5.8007 43 1 2.7114 2.1114 8.8435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341173301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:31 Heat of formation + Delta-G solvation = 25.464670 kcal Electronic energy + Delta-G solvation = -21994.925952 eV Core-core repulsion = 18848.819025 eV Total energy + Delta-G solvation = -3146.106927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.07655 -39.66907 -35.48188 -34.45832 -33.39611 -32.66384 -31.06275 -29.76500 -29.38660 -25.84805 -24.33173 -23.84056 -22.97806 -21.98410 -21.62599 -20.24048 -18.37166 -17.57353 -17.02795 -16.38583 -15.93281 -15.20136 -14.65039 -14.56396 -14.37663 -13.93131 -13.49033 -13.42706 -13.11517 -12.70439 -12.52984 -12.41602 -12.21191 -12.05843 -11.62180 -11.54146 -11.32673 -11.18264 -11.10547 -10.97543 -10.77964 -10.74131 -10.54417 -10.38300 -10.16768 -10.13996 -9.99527 -9.88684 -9.33095 -9.09426 -8.44576 -6.09071 -4.13937 1.65147 2.69162 3.30225 3.34626 3.35984 3.41471 3.90103 4.35986 4.40486 4.54576 4.63818 4.75837 5.00685 5.04568 5.10544 5.18629 5.27390 5.31456 5.33725 5.38577 5.48372 5.57974 5.64570 5.73929 5.84321 5.86075 5.90805 5.95840 6.00609 6.04014 6.04470 6.17668 6.21474 6.26354 6.27569 6.35429 6.47031 6.58814 6.64585 7.49371 7.56952 7.86297 8.21955 8.66307 8.91126 9.50920 11.02117 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.003469 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.471888 B = 8070.205115 C = 8388.983602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.080 4.080 4 H 0.073 0.927 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.112 4.112 9 C 0.012 3.988 10 H 0.097 0.903 11 C 0.172 3.828 12 N -0.392 5.392 13 O 0.062 5.938 14 C 0.213 3.787 15 C -0.028 4.028 16 C 0.029 3.971 17 C -0.527 4.527 18 H 0.061 0.939 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 N -0.497 5.497 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -1.831 -19.879 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.099 4.099 4 H 0.091 0.909 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.008 4.008 10 H 0.115 0.885 11 C -0.101 4.101 12 N -0.104 5.104 13 O 0.008 5.992 14 C -0.006 4.006 15 C -0.068 4.068 16 C -0.010 4.010 17 C -0.565 4.565 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.231 5.231 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.065 -1.922 -20.434 20.627 hybrid contribution 0.406 0.151 1.211 1.286 sum -1.659 -1.771 -19.222 19.375 Atomic orbital electron populations 1.21796 0.96135 1.01343 1.01485 1.21919 0.95577 0.96001 1.03755 1.21137 0.92987 0.97465 0.98353 0.90895 1.21564 1.00646 0.99035 0.93724 1.21601 0.95387 1.01102 0.97898 1.21507 0.96061 1.00956 0.96805 1.21597 1.00270 0.99963 0.93181 1.19550 0.95982 0.99076 0.86184 0.88487 1.25658 0.97281 0.88800 0.98369 1.74452 1.19487 1.18701 0.97756 1.85276 1.51766 1.38187 1.24017 1.29576 0.92321 0.80423 0.98324 1.20734 0.98889 1.03895 0.83238 1.19144 0.93442 0.97234 0.91145 1.21038 0.96353 1.46201 0.92900 0.92089 1.25010 0.94848 0.95061 0.99292 1.69961 1.07786 1.44918 1.30305 0.86568 0.79292 0.78596 0.83036 1.20080 1.21255 1.20076 1.71937 1.20129 1.29399 1.01596 0.92945 0.92856 0.92992 0.91567 0.89720 0.91817 0.91350 0.92089 0.91483 0.91779 0.91756 0.90921 0.91856 0.89184 0.88312 0.95568 0.95842 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 37.16 0.36 -1.27 16 2 C -0.14 -1.66 4.45 -26.73 -0.12 -1.78 16 3 C -0.08 -0.96 2.18 -90.62 -0.20 -1.16 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.11 -1.05 5.21 -26.73 -0.14 -1.19 16 6 C -0.12 -1.02 5.65 -26.73 -0.15 -1.17 16 7 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 8 C -0.11 -1.24 4.91 -26.73 -0.13 -1.37 16 9 C 0.01 0.16 2.44 -91.78 -0.22 -0.06 16 10 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 11 C 0.17 2.93 6.57 -156.37 -1.03 1.91 16 12 N -0.39 -6.96 9.43 30.90 0.29 -6.67 16 13 O 0.06 1.16 11.31 18.10 0.20 1.37 16 14 C 0.21 4.10 7.77 -13.05 -0.10 4.00 16 15 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 16 C 0.03 0.71 4.95 -27.88 -0.14 0.57 16 17 C -0.53 -14.14 9.11 -34.44 -0.31 -14.45 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 N -0.50 -9.62 11.55 -9.87 -0.11 -9.73 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.75 4.83 -51.93 -0.25 0.50 16 30 H 0.08 1.28 5.20 -51.93 -0.27 1.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.57 6.32 -51.93 -0.33 0.25 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -29.34 334.43 -8.37 -37.71 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -6.91 Total: -1.88 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.60 Total: -16.29 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.91 Total: -41.88 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.34 -8.37 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.178 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds