Wall clock time and date at job start Tue Mar 31 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.08992 * 109.47303 * 54.99820 * 3 2 1 5 5 C 1.53002 * 109.46817 * 295.00077 * 3 2 1 6 6 C 1.52997 * 109.47415 * 300.00127 * 5 3 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 3 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 5 9 9 C 1.52996 * 109.47131 * 175.00442 * 3 2 1 10 10 H 1.09000 * 109.47054 * 179.97438 * 9 3 2 11 11 C 1.50699 * 109.46861 * 299.99792 * 9 3 2 12 12 N 1.29947 * 126.28644 * 59.69094 * 11 9 3 13 13 O 1.21304 * 110.24703 * 179.84187 * 12 11 9 14 14 C 1.33641 * 109.81502 * 0.42535 * 13 12 11 15 15 C 1.50701 * 126.55482 * 179.76022 * 14 13 12 16 16 C 1.52998 * 109.46864 * 269.97504 * 15 14 13 17 17 C 1.50701 * 109.46864 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00490 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99725 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46948 * 59.99346 * 21 19 17 23 23 H 1.48494 * 109.47348 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47089 * 300.00163 * 21 19 17 25 25 N 1.31129 * 106.89535 * 359.73876 * 14 13 12 26 26 H 1.09009 * 109.47141 * 299.99934 * 1 2 3 27 27 H 1.08997 * 109.47855 * 59.99868 * 1 2 3 28 28 H 1.09004 * 109.47585 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46634 * 240.00096 * 2 1 3 30 30 H 1.09002 * 109.47159 * 120.00132 * 2 1 3 31 31 H 1.09000 * 109.46986 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47601 * 60.00732 * 5 3 2 33 33 H 1.09001 * 109.46922 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.47140 * 59.99976 * 6 5 3 35 35 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 37 37 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 38 38 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46909 * 29.97223 * 15 14 13 40 40 H 1.08995 * 109.47179 * 149.97521 * 15 14 13 41 41 H 1.09001 * 109.47128 * 299.99584 * 16 15 14 42 42 H 1.09002 * 109.47400 * 59.99714 * 16 15 14 43 43 H 0.97003 * 119.99591 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.2452 1.3698 -2.4890 7 6 3.7701 1.3717 -2.3634 8 6 4.1748 0.6877 -1.0560 9 6 3.5648 1.4443 0.1256 10 1 3.9282 2.4719 0.1251 11 6 3.9635 0.7705 1.4133 12 7 3.6938 -0.4535 1.7564 13 8 4.1563 -0.6940 2.8517 14 6 4.7760 0.3893 3.3296 15 6 5.4763 0.5096 4.6587 16 6 4.4810 0.9869 5.7181 17 6 5.1813 1.1078 7.0470 18 1 6.2312 0.8679 7.1279 19 6 4.4817 1.5249 8.1595 20 7 3.2034 1.8176 8.0608 21 14 5.3497 1.6741 9.8069 22 1 6.4609 2.6528 9.6940 23 1 4.3837 2.1375 10.8351 24 1 5.8944 0.3501 10.2011 25 7 4.6588 1.3274 2.4210 26 1 -0.3634 0.5139 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.9989 3.1540 -1.3076 32 1 0.5489 2.1253 -1.3969 33 1 1.9571 1.8575 -3.4203 34 1 1.8818 0.3422 -2.4890 35 1 4.2046 0.8330 -3.2054 36 1 4.1334 2.3993 -2.3634 37 1 3.8114 -0.3400 -1.0560 38 1 5.2611 0.6894 -0.9663 39 1 5.8765 -0.4622 4.9477 40 1 6.2915 1.2283 4.5760 41 1 4.0807 1.9587 5.4290 42 1 3.6656 0.2682 5.8007 43 1 2.7114 2.1114 8.8435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341173301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:30 Heat of formation + Delta-G solvation = 9.286176 kcal Electronic energy + Delta-G solvation = -21995.627504 eV Core-core repulsion = 18848.819025 eV Total energy + Delta-G solvation = -3146.808479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.53412 -40.59291 -36.98712 -36.15325 -34.45520 -34.23252 -32.46861 -31.16601 -30.26313 -27.75182 -25.48196 -24.95607 -24.36821 -23.24347 -22.83031 -21.61526 -19.35762 -19.03565 -18.58971 -18.24365 -16.91353 -16.50937 -16.16094 -15.79300 -15.55655 -15.16838 -15.04173 -14.38799 -14.25733 -14.04545 -13.73466 -13.57645 -13.48713 -13.28520 -13.07359 -12.80030 -12.73284 -12.51125 -12.39326 -12.21659 -12.14255 -11.99908 -11.87902 -11.80782 -11.62271 -11.37910 -11.23453 -10.99380 -10.93005 -10.59898 -10.56729 -8.20972 -6.33536 0.15286 1.25055 1.45529 1.48531 1.56144 1.88682 2.43188 2.64471 3.08454 3.14180 3.62066 3.68110 3.81560 4.05531 4.12351 4.21369 4.32006 4.33400 4.42744 4.45174 4.49070 4.51909 4.59859 4.66444 4.72499 4.78962 4.85904 4.93592 4.95797 5.02078 5.09986 5.14153 5.17339 5.22748 5.26885 5.35917 5.40818 5.41502 5.48263 5.51872 5.63023 5.76287 6.12021 6.81879 7.18419 7.36772 8.91298 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.003469 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.471888 B = 8070.205115 C = 8388.983602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.078 4.078 4 H 0.049 0.951 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.009 3.991 10 H 0.099 0.901 11 C 0.174 3.826 12 N -0.393 5.393 13 O 0.051 5.949 14 C 0.205 3.795 15 C -0.014 4.014 16 C 0.035 3.965 17 C -0.541 4.541 18 H 0.079 0.921 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.262 1.262 25 N -0.516 5.516 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.112 0.888 41 H -0.008 1.008 42 H -0.004 1.004 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -1.785 -21.345 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.098 4.098 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.011 4.011 10 H 0.117 0.883 11 C -0.099 4.099 12 N -0.107 5.107 13 O 0.000 6.000 14 C -0.014 4.014 15 C -0.053 4.053 16 C -0.003 4.003 17 C -0.578 4.578 18 H 0.097 0.903 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.187 1.187 25 N -0.250 5.250 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.010 0.990 42 H 0.014 0.986 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.162 -1.896 -21.903 22.016 hybrid contribution 0.082 0.141 1.614 1.622 sum -1.080 -1.756 -20.289 20.393 Atomic orbital electron populations 1.21777 0.95026 1.01786 1.01852 1.21869 0.96561 0.95879 1.02709 1.21130 0.91889 0.97402 0.99337 0.93287 1.21555 1.01398 0.99145 0.92345 1.21603 0.94844 1.01096 0.98115 1.21507 0.96531 1.01241 0.95552 1.21572 0.99754 0.99519 0.93571 1.19838 0.97013 0.99060 0.85210 0.88324 1.26393 0.95983 0.88532 0.98998 1.74496 1.19543 1.19228 0.97449 1.85265 1.51925 1.38242 1.24592 1.29478 0.92644 0.80815 0.98479 1.20494 0.97555 1.05382 0.81829 1.18926 0.93852 0.94814 0.92709 1.21543 0.97279 1.45431 0.93583 0.90327 1.26021 0.95482 0.94671 1.03651 1.70118 1.09668 1.46287 1.31450 0.85409 0.78103 0.79217 0.77779 1.18895 1.21442 1.18709 1.71943 1.20879 1.29790 1.02364 0.94318 0.90695 0.92556 0.90332 0.92914 0.91202 0.90338 0.89966 0.91535 0.90125 0.91070 0.91641 0.92333 0.86726 0.86952 0.99002 0.98585 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.67 71.98 0.70 -2.39 16 2 C -0.13 -3.21 4.45 30.59 0.14 -3.08 16 3 C -0.08 -1.84 2.18 -10.79 -0.02 -1.87 16 4 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 5 C -0.11 -1.76 5.21 30.59 0.16 -1.60 16 6 C -0.12 -1.60 5.65 30.60 0.17 -1.43 16 7 C -0.11 -1.61 5.92 30.60 0.18 -1.42 16 8 C -0.11 -2.21 4.91 30.59 0.15 -2.06 16 9 C 0.01 0.23 2.44 -11.54 -0.03 0.20 16 10 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 11 C 0.17 6.03 6.57 138.46 0.91 6.94 16 12 N -0.39 -14.30 9.43 -60.31 -0.57 -14.87 16 13 O 0.05 1.98 11.31 74.85 0.85 2.83 16 14 C 0.21 8.07 7.77 88.38 0.69 8.75 16 15 C -0.01 -0.54 5.78 29.85 0.17 -0.36 16 16 C 0.04 1.81 4.95 29.85 0.15 1.96 16 17 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 18 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.94 -56.44 13.29 21.45 0.28 -56.16 16 21 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 25 N -0.52 -20.32 11.55 -303.20 -3.50 -23.83 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 1.23 6.57 -2.39 -0.02 1.22 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.69 4.83 -2.38 -0.01 1.68 16 30 H 0.05 1.63 5.20 -2.39 -0.01 1.62 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.15 6.57 -2.39 -0.02 1.14 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.93 6.32 -2.39 -0.02 0.91 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.46 6.54 -2.39 -0.02 1.45 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 40 H 0.11 4.07 8.14 -2.39 -0.02 4.06 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -64.64 334.43 4.13 -60.51 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.99 Total: 11.48 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.06 Total: -24.78 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.79 Total: -94.85 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.85 Total: 2.83 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -64.64 4.13 -60.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.797 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds