Wall clock time and date at job start Tue Mar 31 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 H 1.09005 * 109.46793 * 304.99828 * 3 2 1 5 5 C 1.52996 * 109.47326 * 65.00008 * 3 2 1 6 6 C 1.53001 * 109.47281 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46657 * 299.99805 * 6 5 3 8 8 C 1.52996 * 109.47115 * 60.00093 * 7 6 5 9 9 C 1.53001 * 109.47281 * 299.99524 * 8 7 6 10 10 H 1.08996 * 109.46992 * 300.00520 * 9 8 7 11 11 C 1.50693 * 109.47202 * 180.02562 * 9 8 7 12 12 N 1.29948 * 126.29045 * 300.02435 * 11 9 8 13 13 O 1.21297 * 110.25402 * 179.97438 * 12 11 9 14 14 C 1.33644 * 109.80913 * 0.02562 * 13 12 11 15 15 C 1.50702 * 126.54815 * 179.73250 * 14 13 12 16 16 C 1.53002 * 109.47412 * 270.02697 * 15 14 13 17 17 C 1.50693 * 109.47410 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99946 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46718 * 90.00240 * 21 19 17 23 23 H 1.48492 * 109.47426 * 210.00247 * 21 19 17 24 24 H 1.48500 * 109.47242 * 330.00782 * 21 19 17 25 25 N 1.31126 * 106.89983 * 0.02562 * 14 13 12 26 26 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46923 * 300.00298 * 1 2 3 28 28 H 1.08998 * 109.46938 * 60.00285 * 1 2 3 29 29 H 1.08994 * 109.47249 * 239.99184 * 2 1 3 30 30 H 1.09007 * 109.47064 * 119.99926 * 2 1 3 31 31 H 1.09003 * 109.47140 * 299.99689 * 5 3 2 32 32 H 1.08996 * 109.47532 * 60.00153 * 5 3 2 33 33 H 1.08996 * 109.47444 * 59.99195 * 6 5 3 34 34 H 1.08994 * 109.47163 * 180.02562 * 6 5 3 35 35 H 1.09006 * 109.47071 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47154 * 299.99576 * 7 6 5 37 37 H 1.09003 * 109.47140 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47538 * 60.00272 * 8 7 6 39 39 H 1.08999 * 109.47336 * 30.02546 * 15 14 13 40 40 H 1.09003 * 109.47254 * 150.02825 * 15 14 13 41 41 H 1.09004 * 109.47183 * 300.00374 * 16 15 14 42 42 H 1.09003 * 109.46807 * 59.99854 * 16 15 14 43 43 H 0.97008 * 119.99799 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5692 1.3070 7 6 3.6697 3.5715 1.1810 8 6 4.0744 2.8874 -0.1263 9 6 3.5649 1.4447 -0.1260 10 1 3.9998 0.9060 0.7158 11 6 3.9641 0.7707 -1.4133 12 7 3.6271 1.1416 -2.6123 13 8 4.1093 0.3919 -3.4349 14 6 4.8209 -0.5577 -2.8201 15 6 5.5735 -1.6842 -3.4802 16 6 4.6517 -2.8966 -3.6267 17 6 5.4044 -4.0232 -4.2862 18 1 6.4370 -3.8879 -4.5727 19 6 4.7750 -5.2267 -4.5240 20 7 3.5176 -5.3912 -4.1756 21 14 5.7079 -6.6230 -5.3421 22 1 6.3647 -7.4555 -4.3025 23 1 4.7616 -7.4606 -6.1220 24 1 6.7391 -6.0630 -6.2522 25 7 4.7339 -0.3257 -1.5324 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.7100 4.1080 0.4652 34 1 1.8569 4.0564 2.2385 35 1 4.0327 4.5993 1.1804 36 1 4.1046 3.0328 2.0228 37 1 5.1607 2.8886 -0.2158 38 1 3.6395 3.4262 -0.9681 39 1 5.9139 -1.3655 -4.4654 40 1 6.4341 -1.9541 -2.8680 41 1 4.3111 -3.2153 -2.6415 42 1 3.7911 -2.6267 -4.2388 43 1 3.0746 -6.2378 -4.3432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341173308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:38 Heat of formation + Delta-G solvation = 15.750985 kcal Electronic energy + Delta-G solvation = -21934.849174 eV Core-core repulsion = 18788.321030 eV Total energy + Delta-G solvation = -3146.528144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.06608 -39.33238 -35.45129 -34.43906 -34.02719 -32.64693 -31.03753 -29.81855 -29.06938 -25.82581 -24.31482 -23.93358 -23.00520 -21.64736 -20.78195 -20.57995 -19.41282 -17.55970 -17.03962 -16.34950 -15.63768 -14.94460 -14.55449 -14.51969 -14.28492 -14.01009 -13.74040 -13.40231 -13.30859 -12.84519 -12.56762 -12.39439 -12.03799 -11.70393 -11.56921 -11.55550 -11.32810 -11.19542 -11.14709 -10.99336 -10.85225 -10.75060 -10.61625 -10.45606 -10.26318 -10.19015 -10.09754 -9.87112 -9.31792 -9.11072 -8.44863 -6.09190 -4.13861 1.67141 2.70495 3.28924 3.35001 3.37378 3.43260 3.90167 4.32940 4.39999 4.57097 4.63945 4.72471 4.95926 5.01176 5.16828 5.22701 5.27434 5.29970 5.33042 5.34376 5.51410 5.57108 5.61338 5.71927 5.85067 5.89576 5.91189 5.97261 6.01587 6.02919 6.06562 6.16478 6.18666 6.20377 6.26454 6.36107 6.42442 6.51819 6.64579 7.49645 7.57052 7.86380 8.22069 8.67327 8.91361 9.51009 11.02020 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.003679 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.743077 B = 7608.949812 C = 8252.502761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.076 0.924 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.012 3.988 10 H 0.097 0.903 11 C 0.174 3.826 12 N -0.397 5.397 13 O 0.065 5.935 14 C 0.211 3.789 15 C -0.028 4.028 16 C 0.029 3.971 17 C -0.526 4.526 18 H 0.061 0.939 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 N -0.496 5.496 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 16.277 10.316 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.097 4.097 4 H 0.094 0.906 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.008 4.008 10 H 0.115 0.885 11 C -0.099 4.099 12 N -0.108 5.108 13 O 0.009 5.991 14 C -0.008 4.008 15 C -0.067 4.067 16 C -0.010 4.010 17 C -0.564 4.564 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.230 5.230 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.957 16.765 10.566 20.036 hybrid contribution 0.477 -1.055 -0.620 1.313 sum -2.479 15.711 9.946 18.759 Atomic orbital electron populations 1.21785 0.95694 1.01760 1.01481 1.21564 0.96021 0.95715 1.02503 1.21218 0.92928 0.96796 0.98734 0.90567 1.21628 1.00984 0.95407 0.97031 1.21569 0.95658 0.96904 1.01735 1.21520 0.96094 1.00432 0.97348 1.21570 1.00858 0.93867 0.98605 1.19574 0.96264 0.94967 0.90015 0.88468 1.25618 0.96181 0.92744 0.95334 1.74490 1.19968 1.15842 1.00502 1.85271 1.48696 1.30575 1.34518 1.29597 0.91898 0.92188 0.87142 1.20732 0.98005 0.88669 0.99342 1.19146 0.94187 0.89360 0.98272 1.21073 0.98156 0.97117 1.40049 0.92052 1.25010 0.94896 0.98723 0.95600 1.69971 1.10634 1.25307 1.47026 0.86512 0.79590 0.81959 0.79474 1.20551 1.21181 1.19694 1.71943 1.20228 1.14734 1.16052 0.92634 0.92645 0.92903 0.92145 0.91688 0.91311 0.91666 0.91908 0.91932 0.91733 0.91683 0.91731 0.91240 0.89209 0.88314 0.95559 0.95856 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 37.16 0.36 -1.39 16 2 C -0.12 -1.62 5.25 -26.73 -0.14 -1.76 16 3 C -0.08 -0.93 1.71 -90.62 -0.15 -1.09 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.11 -1.05 4.96 -26.73 -0.13 -1.18 16 6 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 7 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 8 C -0.11 -1.24 5.19 -26.73 -0.14 -1.38 16 9 C 0.01 0.16 2.19 -91.77 -0.20 -0.04 16 10 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.17 2.99 5.38 -156.37 -0.84 2.14 16 12 N -0.40 -7.24 12.16 30.90 0.38 -6.86 16 13 O 0.06 1.24 11.31 18.10 0.20 1.44 16 14 C 0.21 4.08 7.77 -13.06 -0.10 3.98 16 15 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 16 C 0.03 0.71 4.95 -27.88 -0.14 0.57 16 17 C -0.53 -14.10 9.11 -34.44 -0.31 -14.42 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 N -0.50 -9.55 11.55 -9.87 -0.11 -9.67 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.03 7.05 -51.93 -0.37 0.66 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -29.47 344.92 -8.35 -37.82 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.35 Total: -2.38 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.38 Total: -16.04 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 1.00 Total: -41.96 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.20 Total: 1.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.47 -8.35 -37.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds