Wall clock time and date at job start Tue Mar 31 2020 00:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 H 1.09005 * 109.46793 * 304.99828 * 3 2 1 5 5 C 1.52996 * 109.47326 * 65.00008 * 3 2 1 6 6 C 1.53001 * 109.47281 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46657 * 299.99805 * 6 5 3 8 8 C 1.52996 * 109.47115 * 60.00093 * 7 6 5 9 9 C 1.53001 * 109.47281 * 299.99524 * 8 7 6 10 10 H 1.08996 * 109.46992 * 300.00520 * 9 8 7 11 11 C 1.50693 * 109.47202 * 180.02562 * 9 8 7 12 12 N 1.29948 * 126.29045 * 300.02435 * 11 9 8 13 13 O 1.21297 * 110.25402 * 179.97438 * 12 11 9 14 14 C 1.33644 * 109.80913 * 0.02562 * 13 12 11 15 15 C 1.50702 * 126.54815 * 179.73250 * 14 13 12 16 16 C 1.53002 * 109.47412 * 270.02697 * 15 14 13 17 17 C 1.50693 * 109.47410 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99946 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46718 * 90.00240 * 21 19 17 23 23 H 1.48492 * 109.47426 * 210.00247 * 21 19 17 24 24 H 1.48500 * 109.47242 * 330.00782 * 21 19 17 25 25 N 1.31126 * 106.89983 * 0.02562 * 14 13 12 26 26 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46923 * 300.00298 * 1 2 3 28 28 H 1.08998 * 109.46938 * 60.00285 * 1 2 3 29 29 H 1.08994 * 109.47249 * 239.99184 * 2 1 3 30 30 H 1.09007 * 109.47064 * 119.99926 * 2 1 3 31 31 H 1.09003 * 109.47140 * 299.99689 * 5 3 2 32 32 H 1.08996 * 109.47532 * 60.00153 * 5 3 2 33 33 H 1.08996 * 109.47444 * 59.99195 * 6 5 3 34 34 H 1.08994 * 109.47163 * 180.02562 * 6 5 3 35 35 H 1.09006 * 109.47071 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47154 * 299.99576 * 7 6 5 37 37 H 1.09003 * 109.47140 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.47538 * 60.00272 * 8 7 6 39 39 H 1.08999 * 109.47336 * 30.02546 * 15 14 13 40 40 H 1.09003 * 109.47254 * 150.02825 * 15 14 13 41 41 H 1.09004 * 109.47183 * 300.00374 * 16 15 14 42 42 H 1.09003 * 109.46807 * 59.99854 * 16 15 14 43 43 H 0.97008 * 119.99799 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5692 1.3070 7 6 3.6697 3.5715 1.1810 8 6 4.0744 2.8874 -0.1263 9 6 3.5649 1.4447 -0.1260 10 1 3.9998 0.9060 0.7158 11 6 3.9641 0.7707 -1.4133 12 7 3.6271 1.1416 -2.6123 13 8 4.1093 0.3919 -3.4349 14 6 4.8209 -0.5577 -2.8201 15 6 5.5735 -1.6842 -3.4802 16 6 4.6517 -2.8966 -3.6267 17 6 5.4044 -4.0232 -4.2862 18 1 6.4370 -3.8879 -4.5727 19 6 4.7750 -5.2267 -4.5240 20 7 3.5176 -5.3912 -4.1756 21 14 5.7079 -6.6230 -5.3421 22 1 6.3647 -7.4555 -4.3025 23 1 4.7616 -7.4606 -6.1220 24 1 6.7391 -6.0630 -6.2522 25 7 4.7339 -0.3257 -1.5324 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0699 1.5876 2.1491 33 1 1.7100 4.1080 0.4652 34 1 1.8569 4.0564 2.2385 35 1 4.0327 4.5993 1.1804 36 1 4.1046 3.0328 2.0228 37 1 5.1607 2.8886 -0.2158 38 1 3.6395 3.4262 -0.9681 39 1 5.9139 -1.3655 -4.4654 40 1 6.4341 -1.9541 -2.8680 41 1 4.3111 -3.2153 -2.6415 42 1 3.7911 -2.6267 -4.2388 43 1 3.0746 -6.2378 -4.3432 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341173308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:37 Heat of formation + Delta-G solvation = -0.973422 kcal Electronic energy + Delta-G solvation = -21935.574399 eV Core-core repulsion = 18788.321030 eV Total energy + Delta-G solvation = -3147.253369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.54444 -40.27792 -36.96780 -36.13706 -34.96205 -34.42034 -32.43293 -31.21789 -29.99732 -27.74616 -25.48817 -24.85713 -24.63739 -23.24298 -21.91292 -21.59439 -20.50122 -19.10669 -18.64122 -18.22876 -16.65689 -16.50678 -15.94675 -15.71873 -15.49947 -15.14059 -14.90532 -14.76441 -14.34050 -14.26159 -13.73798 -13.63104 -13.55099 -13.32085 -12.83586 -12.80150 -12.65600 -12.44911 -12.38343 -12.30486 -12.08480 -12.04670 -11.90925 -11.87160 -11.73938 -11.41238 -11.36202 -11.11648 -11.05778 -10.62877 -10.57875 -8.21267 -6.33699 0.15125 1.25500 1.45403 1.46419 1.57627 1.88861 2.42894 2.63599 3.07320 3.14006 3.57759 3.68046 3.74519 3.99933 4.09548 4.23244 4.26391 4.35895 4.38371 4.41201 4.48592 4.51018 4.51965 4.62298 4.68050 4.74993 4.88047 4.89464 4.94439 5.00318 5.07543 5.08661 5.17084 5.20329 5.23954 5.28948 5.32663 5.41254 5.43117 5.51114 5.55077 5.76136 6.11784 6.81815 7.17613 7.36589 8.91201 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027451 B = 0.003679 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.743077 B = 7608.949812 C = 8252.502761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.071 4.071 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.105 4.105 9 C 0.008 3.992 10 H 0.100 0.900 11 C 0.181 3.819 12 N -0.407 5.407 13 O 0.054 5.946 14 C 0.204 3.796 15 C -0.014 4.014 16 C 0.036 3.964 17 C -0.539 4.539 18 H 0.079 0.921 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.256 1.256 25 N -0.512 5.512 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.113 0.887 41 H -0.008 1.008 42 H -0.005 1.005 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 17.388 11.403 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.090 4.090 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.144 4.144 9 C -0.012 4.012 10 H 0.119 0.881 11 C -0.092 4.092 12 N -0.120 5.120 13 O 0.001 5.999 14 C -0.015 4.015 15 C -0.053 4.053 16 C -0.002 4.002 17 C -0.577 4.577 18 H 0.097 0.903 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.180 1.180 25 N -0.247 5.247 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.010 0.990 42 H 0.013 0.987 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.139 17.891 11.634 21.448 hybrid contribution 0.185 -1.377 -0.923 1.668 sum -1.954 16.514 10.712 19.780 Atomic orbital electron populations 1.21766 0.94181 1.01775 1.02597 1.21555 0.97425 0.96436 1.00381 1.21177 0.91759 0.95812 1.00248 0.91858 1.21620 1.01857 0.95914 0.95101 1.21574 0.95138 0.96086 1.02809 1.21521 0.96566 1.01048 0.95739 1.21554 1.00441 0.92324 1.00080 1.19881 0.97287 0.96047 0.87983 0.88133 1.26348 0.94659 0.91797 0.96386 1.74472 1.20445 1.16159 1.00904 1.85250 1.48884 1.30776 1.34940 1.29521 0.92126 0.92477 0.87393 1.20501 0.96968 0.86648 1.01161 1.18922 0.94251 0.91487 0.95579 1.21564 0.99009 0.97608 1.39523 0.90332 1.26019 0.95720 1.01823 0.96271 1.70124 1.12608 1.26127 1.48631 0.85356 0.78318 0.78275 0.78557 1.19895 1.21262 1.17963 1.71950 1.21019 1.15604 1.16094 0.93231 0.89876 0.93359 0.96676 0.91326 0.90081 0.90822 0.92173 0.89699 0.90141 0.90826 0.92145 0.92201 0.86769 0.86877 0.98986 0.98671 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.67 71.98 0.70 -2.65 16 2 C -0.12 -3.29 5.25 30.59 0.16 -3.13 16 3 C -0.07 -1.65 1.71 -10.79 -0.02 -1.67 16 4 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 5 C -0.11 -1.72 4.96 30.59 0.15 -1.56 16 6 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 7 C -0.11 -1.61 5.92 30.59 0.18 -1.43 16 8 C -0.11 -2.23 5.19 30.59 0.16 -2.08 16 9 C 0.01 0.21 2.19 -11.54 -0.03 0.19 16 10 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 11 C 0.18 6.33 5.38 138.46 0.75 7.07 16 12 N -0.41 -15.22 12.16 -60.32 -0.73 -15.95 16 13 O 0.05 2.11 11.31 74.83 0.85 2.96 16 14 C 0.20 8.09 7.77 88.38 0.69 8.78 16 15 C -0.01 -0.55 5.78 29.85 0.17 -0.37 16 16 C 0.04 1.85 4.95 29.85 0.15 1.99 16 17 C -0.54 -29.06 9.11 25.60 0.23 -28.83 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 19 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 20 N -0.94 -56.43 13.29 21.45 0.28 -56.14 16 21 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 N -0.51 -20.20 11.55 -303.20 -3.50 -23.70 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.44 6.57 -2.39 -0.02 1.42 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.01 0.53 7.05 -2.39 -0.02 0.51 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 1.13 6.57 -2.39 -0.02 1.11 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 41 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -65.42 344.92 3.82 -61.60 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.97 Total: 11.02 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.93 Total: -24.66 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.95 Total: -95.79 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.42 3.82 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.624 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds