Wall clock time and date at job start Tue Mar 31 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47104 * 2 1 4 4 H 1.08996 * 109.47078 * 55.00416 * 3 2 1 5 5 C 1.52996 * 109.47259 * 295.00033 * 3 2 1 6 6 C 1.53001 * 109.47035 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47415 * 59.99716 * 6 5 3 8 8 C 1.52996 * 109.47251 * 300.00152 * 7 6 5 9 9 C 1.52997 * 109.47259 * 59.99878 * 8 7 6 10 10 H 1.09007 * 109.47467 * 59.99786 * 9 8 7 11 11 C 1.50705 * 109.47396 * 180.02562 * 9 8 7 12 12 N 1.29939 * 126.28475 * 60.02376 * 11 9 8 13 13 O 1.21300 * 110.24805 * 179.68568 * 12 11 9 14 14 C 1.33641 * 109.81201 * 0.46529 * 13 12 11 15 15 C 1.50699 * 126.55157 * 179.79732 * 14 13 12 16 16 C 1.53001 * 109.47500 * 269.69424 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99792 * 179.72330 * 19 17 16 21 21 Si 1.86795 * 120.00009 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99795 * 21 19 17 23 23 H 1.48495 * 109.47293 * 209.99997 * 21 19 17 24 24 H 1.48507 * 109.47015 * 329.99955 * 21 19 17 25 25 N 1.31131 * 106.89715 * 359.54504 * 14 13 12 26 26 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47366 * 300.00083 * 1 2 3 28 28 H 1.08996 * 109.47126 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.46841 * 239.99921 * 2 1 3 30 30 H 1.09003 * 109.47008 * 120.00244 * 2 1 3 31 31 H 1.08998 * 109.47187 * 59.99747 * 5 3 2 32 32 H 1.09007 * 109.47253 * 299.99707 * 5 3 2 33 33 H 1.08997 * 109.46704 * 299.99710 * 6 5 3 34 34 H 1.09005 * 109.46906 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47179 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.47132 * 60.00397 * 7 6 5 37 37 H 1.08997 * 109.47138 * 300.00170 * 8 7 6 38 38 H 1.09001 * 109.47248 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.46737 * 149.69162 * 15 14 13 40 40 H 1.09002 * 109.46890 * 29.69273 * 15 14 13 41 41 H 1.08998 * 109.46837 * 60.00023 * 16 15 14 42 42 H 1.09002 * 109.46926 * 299.99827 * 16 15 14 43 43 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1458 3.5688 -1.3075 7 6 3.6706 3.5702 -1.1820 8 6 4.0753 2.8861 0.1253 9 6 3.5649 1.4438 0.1255 10 1 3.9991 0.9045 -0.7164 11 6 3.9630 0.7702 1.4135 12 7 3.6250 1.1414 2.6120 13 8 4.1010 0.3880 3.4348 14 6 4.8177 -0.5585 2.8212 15 6 5.5736 -1.6821 3.4825 16 6 7.0044 -1.2288 3.7796 17 6 7.7603 -2.3526 4.4403 18 1 7.2694 -3.2956 4.6299 19 6 9.0790 -2.1768 4.8029 20 7 9.7371 -3.1557 5.3844 21 14 9.9281 -0.5455 4.4757 22 1 9.7457 0.3509 5.6456 23 1 11.3775 -0.7781 4.2515 24 1 9.3360 0.0877 3.2699 25 7 4.7331 -0.3260 1.5335 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3969 32 1 2.0699 1.5875 -2.1492 33 1 1.7115 4.1080 -0.4657 34 1 1.8570 4.0563 -2.2387 35 1 4.0343 4.5977 -1.1826 36 1 4.1049 3.0309 -2.0239 37 1 3.6410 3.4253 0.9671 38 1 5.1617 2.8866 0.2145 39 1 5.5965 -2.5453 2.8174 40 1 5.0779 -1.9543 4.4144 41 1 6.9813 -0.3656 4.4447 42 1 7.5001 -0.9565 2.8478 43 1 10.6649 -3.0322 5.6392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341173311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:42 Heat of formation + Delta-G solvation = 19.604313 kcal Electronic energy + Delta-G solvation = -21903.428831 eV Core-core repulsion = 18757.067779 eV Total energy + Delta-G solvation = -3146.361051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.19844 -39.43090 -35.58550 -34.56868 -34.16471 -32.65926 -31.23487 -30.07731 -29.20863 -26.20757 -24.43773 -24.04703 -23.00425 -21.49193 -20.88983 -20.57713 -19.52642 -17.68262 -17.27623 -16.69870 -15.74035 -15.08086 -14.61043 -14.48173 -14.30264 -14.08786 -13.82491 -13.58468 -13.45270 -12.96551 -12.78477 -12.60834 -12.18882 -11.86678 -11.85054 -11.69055 -11.43252 -11.32984 -11.26659 -11.09101 -10.97108 -10.77218 -10.63010 -10.55217 -10.34463 -10.19465 -10.12614 -9.89373 -9.37057 -9.31937 -8.62960 -6.13719 -4.14149 1.53909 2.57759 3.26789 3.28753 3.34775 3.38629 3.79151 4.22429 4.38015 4.47083 4.54131 4.62650 4.84815 4.90950 5.03408 5.12205 5.19103 5.20331 5.22091 5.26730 5.41415 5.42188 5.48717 5.60058 5.76825 5.77732 5.80454 5.87464 5.90048 5.91278 5.96031 6.02427 6.02986 6.05846 6.10281 6.19900 6.29056 6.38689 6.46942 7.02339 7.15972 7.61593 8.38408 8.54633 8.88495 9.47070 10.98936 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003852 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.781864 B = 7267.620205 C = 7970.817398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.076 0.924 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.112 4.112 9 C 0.012 3.988 10 H 0.098 0.902 11 C 0.174 3.826 12 N -0.395 5.395 13 O 0.066 5.934 14 C 0.206 3.794 15 C -0.019 4.019 16 C -0.007 4.007 17 C -0.525 4.525 18 H 0.078 0.922 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.876 3.124 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.266 1.266 25 N -0.494 5.494 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.018 0.982 42 H 0.026 0.974 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.774 11.390 -13.266 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.097 4.097 4 H 0.095 0.905 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.008 4.008 10 H 0.116 0.884 11 C -0.099 4.099 12 N -0.106 5.106 13 O 0.011 5.989 14 C -0.013 4.013 15 C -0.058 4.058 16 C -0.046 4.046 17 C -0.563 4.563 18 H 0.096 0.904 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.191 1.191 25 N -0.228 5.228 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.019 11.948 -13.442 24.761 hybrid contribution 0.771 0.645 0.119 1.012 sum -16.249 12.592 -13.323 24.496 Atomic orbital electron populations 1.21796 0.95698 1.01573 1.01721 1.21558 0.95930 0.95962 1.02218 1.21219 0.92996 0.96615 0.98870 0.90515 1.21627 1.00904 0.95556 0.96942 1.21569 0.95716 0.96797 1.01798 1.21518 0.95990 1.00581 0.97324 1.21582 1.01125 0.93731 0.98645 1.19589 0.96131 0.95170 0.89949 0.88389 1.25650 0.96156 0.92700 0.95377 1.74504 1.20352 1.15300 1.00440 1.85280 1.48594 1.30517 1.34557 1.29616 0.91409 0.93167 0.87141 1.20513 0.95640 0.89708 0.99951 1.19612 0.89500 0.97984 0.97455 1.20935 0.96379 0.99483 1.39505 0.90369 1.24946 0.97231 0.96511 0.94275 1.69893 1.10703 1.32092 1.40824 0.86827 0.78936 0.84505 0.79395 1.20076 1.21113 1.19064 1.71956 1.19449 1.15284 1.16064 0.92818 0.92867 0.92473 0.91660 0.92451 0.91335 0.91651 0.91900 0.91874 0.91627 0.91647 0.91202 0.91544 0.87701 0.88597 0.96325 0.95602 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.30 5.25 -26.73 -0.14 -1.44 16 3 C -0.08 -0.82 1.71 -90.62 -0.15 -0.98 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.11 -0.92 4.96 -26.73 -0.13 -1.05 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 7 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 8 C -0.11 -1.27 5.19 -26.73 -0.14 -1.40 16 9 C 0.01 0.15 2.19 -91.77 -0.20 -0.06 16 10 H 0.10 1.21 8.14 -51.92 -0.42 0.78 16 11 C 0.17 2.83 5.38 -156.38 -0.84 1.99 16 12 N -0.40 -6.83 12.16 30.89 0.38 -6.45 16 13 O 0.07 1.19 11.31 18.11 0.20 1.39 16 14 C 0.21 3.76 7.77 -13.06 -0.10 3.65 16 15 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 16 C -0.01 -0.16 4.02 -27.89 -0.11 -0.27 16 17 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 18 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 21 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 N -0.49 -9.01 11.55 -9.88 -0.11 -9.12 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.77 7.04 -51.93 -0.37 0.41 16 31 H 0.07 0.50 6.56 -51.93 -0.34 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 42 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -29.76 341.31 -7.98 -37.74 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.32 Total: -3.40 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.37 Total: -15.92 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.04 Total: -41.64 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.20 Total: 1.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.76 -7.98 -37.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.340 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds