Wall clock time and date at job start Tue Mar 31 2020 00:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47104 * 2 1 4 4 H 1.08996 * 109.47078 * 55.00416 * 3 2 1 5 5 C 1.52996 * 109.47259 * 295.00033 * 3 2 1 6 6 C 1.53001 * 109.47035 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47415 * 59.99716 * 6 5 3 8 8 C 1.52996 * 109.47251 * 300.00152 * 7 6 5 9 9 C 1.52997 * 109.47259 * 59.99878 * 8 7 6 10 10 H 1.09007 * 109.47467 * 59.99786 * 9 8 7 11 11 C 1.50705 * 109.47396 * 180.02562 * 9 8 7 12 12 N 1.29939 * 126.28475 * 60.02376 * 11 9 8 13 13 O 1.21300 * 110.24805 * 179.68568 * 12 11 9 14 14 C 1.33641 * 109.81201 * 0.46529 * 13 12 11 15 15 C 1.50699 * 126.55157 * 179.79732 * 14 13 12 16 16 C 1.53001 * 109.47500 * 269.69424 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99902 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99792 * 179.72330 * 19 17 16 21 21 Si 1.86795 * 120.00009 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99795 * 21 19 17 23 23 H 1.48495 * 109.47293 * 209.99997 * 21 19 17 24 24 H 1.48507 * 109.47015 * 329.99955 * 21 19 17 25 25 N 1.31131 * 106.89715 * 359.54504 * 14 13 12 26 26 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47366 * 300.00083 * 1 2 3 28 28 H 1.08996 * 109.47126 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.46841 * 239.99921 * 2 1 3 30 30 H 1.09003 * 109.47008 * 120.00244 * 2 1 3 31 31 H 1.08998 * 109.47187 * 59.99747 * 5 3 2 32 32 H 1.09007 * 109.47253 * 299.99707 * 5 3 2 33 33 H 1.08997 * 109.46704 * 299.99710 * 6 5 3 34 34 H 1.09005 * 109.46906 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47179 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.47132 * 60.00397 * 7 6 5 37 37 H 1.08997 * 109.47138 * 300.00170 * 8 7 6 38 38 H 1.09001 * 109.47248 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.46737 * 149.69162 * 15 14 13 40 40 H 1.09002 * 109.46890 * 29.69273 * 15 14 13 41 41 H 1.08998 * 109.46837 * 60.00023 * 16 15 14 42 42 H 1.09002 * 109.46926 * 299.99827 * 16 15 14 43 43 H 0.97000 * 119.99468 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1458 3.5688 -1.3075 7 6 3.6706 3.5702 -1.1820 8 6 4.0753 2.8861 0.1253 9 6 3.5649 1.4438 0.1255 10 1 3.9991 0.9045 -0.7164 11 6 3.9630 0.7702 1.4135 12 7 3.6250 1.1414 2.6120 13 8 4.1010 0.3880 3.4348 14 6 4.8177 -0.5585 2.8212 15 6 5.5736 -1.6821 3.4825 16 6 7.0044 -1.2288 3.7796 17 6 7.7603 -2.3526 4.4403 18 1 7.2694 -3.2956 4.6299 19 6 9.0790 -2.1768 4.8029 20 7 9.7371 -3.1557 5.3844 21 14 9.9281 -0.5455 4.4757 22 1 9.7457 0.3509 5.6456 23 1 11.3775 -0.7781 4.2515 24 1 9.3360 0.0877 3.2699 25 7 4.7331 -0.3260 1.5335 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3969 32 1 2.0699 1.5875 -2.1492 33 1 1.7115 4.1080 -0.4657 34 1 1.8570 4.0563 -2.2387 35 1 4.0343 4.5977 -1.1826 36 1 4.1049 3.0309 -2.0239 37 1 3.6410 3.4253 0.9671 38 1 5.1617 2.8866 0.2145 39 1 5.5965 -2.5453 2.8174 40 1 5.0779 -1.9543 4.4144 41 1 6.9813 -0.3656 4.4447 42 1 7.5001 -0.9565 2.8478 43 1 10.6649 -3.0322 5.6392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341173311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:41 Heat of formation + Delta-G solvation = 2.390234 kcal Electronic energy + Delta-G solvation = -21904.175289 eV Core-core repulsion = 18757.067779 eV Total energy + Delta-G solvation = -3147.107510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.57614 -40.28013 -37.00829 -36.16202 -34.94844 -34.45629 -32.65475 -31.32654 -29.99059 -28.03564 -25.49627 -24.84904 -24.46242 -23.02009 -21.87642 -21.61020 -20.51852 -19.24114 -18.91903 -18.31563 -16.66517 -16.38253 -15.92925 -15.73452 -15.51438 -15.22031 -14.92923 -14.80372 -14.68417 -14.24621 -13.74036 -13.67605 -13.66021 -13.45339 -12.93091 -12.80745 -12.62599 -12.43366 -12.32176 -12.24101 -12.08244 -12.06091 -11.90678 -11.80147 -11.72528 -11.47413 -11.41343 -11.15128 -11.07263 -10.78735 -10.66530 -8.31095 -6.35561 0.12634 1.23044 1.34249 1.36636 1.46550 1.84971 2.33484 2.60018 3.04397 3.05163 3.57446 3.67685 3.74095 4.00000 4.08556 4.23064 4.23966 4.34291 4.37882 4.38482 4.41903 4.46407 4.50985 4.64022 4.66246 4.74908 4.85757 4.86514 4.92944 4.99177 5.07049 5.09656 5.15960 5.21186 5.21638 5.23635 5.29117 5.32211 5.34449 5.44651 5.54485 5.56049 6.21719 6.71743 7.15852 7.28997 8.84687 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.003852 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.781864 B = 7267.620205 C = 7970.817398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.071 4.071 4 H 0.064 0.936 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.109 4.109 9 C 0.008 3.992 10 H 0.101 0.899 11 C 0.181 3.819 12 N -0.405 5.405 13 O 0.058 5.942 14 C 0.203 3.797 15 C -0.009 4.009 16 C -0.002 4.002 17 C -0.528 4.528 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.258 1.258 25 N -0.509 5.509 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.970 13.359 -15.194 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.090 4.090 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.012 4.012 10 H 0.119 0.881 11 C -0.092 4.092 12 N -0.117 5.117 13 O 0.005 5.995 14 C -0.017 4.017 15 C -0.048 4.048 16 C -0.041 4.041 17 C -0.566 4.566 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.582 5.582 21 Si 0.762 3.238 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.182 1.182 25 N -0.243 5.243 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.232 13.918 -15.359 27.604 hybrid contribution 1.090 -0.026 0.714 1.303 sum -17.141 13.892 -14.645 26.482 Atomic orbital electron populations 1.21770 0.94141 1.02011 1.02444 1.21545 0.97316 0.95885 1.00833 1.21184 0.91270 0.96530 1.00058 0.91773 1.21622 1.01887 0.95623 0.95376 1.21571 0.94792 0.96532 1.02747 1.21514 0.96861 1.00873 0.95695 1.21569 1.00137 0.93003 1.00094 1.19873 0.97674 0.95559 0.88074 0.88056 1.26326 0.94746 0.91826 0.96349 1.74498 1.20914 1.15456 1.00830 1.85267 1.48770 1.30579 1.34871 1.29409 0.91768 0.93185 0.87302 1.20289 0.93486 0.89899 1.01095 1.19461 0.91505 0.96542 0.96564 1.21249 0.96676 0.99755 1.38929 0.92921 1.25798 0.98220 0.99980 0.94291 1.70021 1.11269 1.34369 1.42585 0.85836 0.77883 0.80299 0.79738 1.19081 1.20674 1.18170 1.71969 1.20040 1.16188 1.16119 0.92593 0.93356 0.90480 0.91181 0.95641 0.89872 0.90826 0.92203 0.89838 0.90570 0.90891 0.92213 0.92881 0.87120 0.86947 0.95940 0.96266 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.67 71.98 0.70 -1.69 16 2 C -0.12 -2.44 5.25 30.59 0.16 -2.28 16 3 C -0.07 -1.39 1.71 -10.79 -0.02 -1.41 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.11 -1.43 4.96 30.59 0.15 -1.28 16 6 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 7 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 8 C -0.11 -2.33 5.19 30.59 0.16 -2.17 16 9 C 0.01 0.20 2.19 -11.54 -0.03 0.17 16 10 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 11 C 0.18 5.77 5.38 138.47 0.74 6.52 16 12 N -0.40 -13.87 12.16 -60.36 -0.73 -14.61 16 13 O 0.06 2.08 11.31 74.85 0.85 2.92 16 14 C 0.20 7.31 7.77 88.38 0.69 8.00 16 15 C -0.01 -0.32 5.78 29.85 0.17 -0.15 16 16 C 0.00 -0.10 4.02 29.85 0.12 0.02 16 17 C -0.53 -28.87 9.66 25.60 0.25 -28.62 16 18 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 19 C 0.02 0.86 5.47 84.66 0.46 1.33 16 20 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 21 Si 0.94 43.82 27.47 68.60 1.88 45.71 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.26 -11.57 6.54 99.48 0.65 -10.92 16 25 N -0.51 -18.35 11.55 -303.24 -3.50 -21.85 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.95 6.56 -2.39 -0.02 0.93 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.02 0.67 7.04 -2.39 -0.02 0.66 16 31 H 0.08 0.90 6.56 -2.39 -0.02 0.89 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.90 16 40 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 42 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -64.02 341.31 3.63 -60.39 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.92 Total: 8.76 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.92 Total: -24.28 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -3.94 Total: -93.49 kcal Atomic # 8 Polarization: 2.08 SS G_CDS: 0.85 Total: 2.92 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -64.02 3.63 -60.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341173311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.779 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds