Wall clock time and date at job start Tue Mar 31 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46831 * 2 1 4 4 N 1.46504 * 109.46550 * 179.97438 * 3 2 1 5 5 C 1.36969 * 120.00291 * 264.73631 * 4 3 2 6 6 H 1.08003 * 119.99895 * 125.47435 * 5 4 3 7 7 C 1.38968 * 120.00337 * 305.48342 * 5 4 3 8 8 N 1.31421 * 120.00406 * 183.73700 * 7 5 4 9 9 Si 1.86801 * 119.99939 * 3.72915 * 7 5 4 10 10 H 1.48510 * 109.46673 * 94.59165 * 9 7 5 11 11 H 1.48492 * 109.47273 * 214.59065 * 9 7 5 12 12 H 1.48500 * 109.47193 * 334.59407 * 9 7 5 13 13 C 1.34776 * 119.99652 * 84.74671 * 4 3 2 14 14 O 1.21650 * 120.00432 * 3.73092 * 13 4 3 15 15 C 1.47185 * 119.99845 * 183.73671 * 13 4 3 16 16 C 1.46704 * 126.94557 * 352.56379 * 15 13 4 17 17 C 1.34481 * 106.33975 * 180.02562 * 16 15 13 18 18 C 1.50699 * 125.56365 * 180.02562 * 17 16 15 19 19 N 1.36454 * 108.87544 * 359.97438 * 17 16 15 20 20 C 1.46507 * 124.85328 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.46827 * 90.02457 * 20 19 17 22 22 C 1.34681 * 110.29837 * 359.73023 * 19 17 16 23 23 C 1.50710 * 125.81291 * 180.28228 * 22 19 17 24 24 H 1.08998 * 109.47453 * 300.00559 * 1 2 3 25 25 H 1.09003 * 109.47077 * 59.99881 * 1 2 3 26 26 H 1.08994 * 109.47563 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46915 * 240.00199 * 2 1 3 28 28 H 1.09001 * 109.46578 * 119.99974 * 2 1 3 29 29 H 1.08995 * 109.47208 * 60.00379 * 3 2 1 30 30 H 1.09001 * 109.47518 * 299.99398 * 3 2 1 31 31 H 0.96998 * 120.00623 * 179.97438 * 8 7 5 32 32 H 1.07997 * 126.83294 * 359.97438 * 16 15 13 33 33 H 1.09004 * 109.47433 * 89.97247 * 18 17 16 34 34 H 1.09004 * 109.47573 * 209.97362 * 18 17 16 35 35 H 1.09002 * 109.47096 * 329.97537 * 18 17 16 36 36 H 1.08996 * 109.47040 * 210.02733 * 20 19 17 37 37 H 1.08995 * 109.46792 * 330.02836 * 20 19 17 38 38 H 1.09001 * 109.47534 * 60.00491 * 21 20 19 39 39 H 1.09005 * 109.47190 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47536 * 299.99973 * 21 20 19 41 41 H 1.09001 * 109.46738 * 270.21179 * 23 22 19 42 42 H 1.08991 * 109.47078 * 30.21078 * 23 22 19 43 43 H 1.09001 * 109.46922 * 150.21384 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1894 1.5514 1.1820 6 1 4.9293 0.8109 1.4477 7 6 3.9316 2.6146 2.0390 8 7 4.6389 2.7602 3.1370 9 14 2.5797 3.8372 1.6300 10 1 1.3241 3.4332 2.3124 11 1 2.9803 5.1907 2.0912 12 1 2.3601 3.8595 0.1616 13 6 4.1793 1.3354 -1.1614 14 8 3.5734 1.3072 -2.2159 15 6 5.6488 1.2525 -1.1546 16 6 6.5362 1.4229 0.0011 17 6 7.7901 1.2637 -0.4580 18 6 9.0450 1.3503 0.3720 19 7 7.7408 1.0098 -1.7978 20 6 8.9101 0.7806 -2.6502 21 6 9.2370 -0.7138 -2.6763 22 6 6.4632 0.9947 -2.2237 23 6 6.0080 0.7415 -3.6379 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 4.4593 3.5025 3.7349 32 1 6.2412 1.6349 1.0182 33 1 9.2898 0.3634 0.7647 34 1 9.8668 1.7086 -0.2481 35 1 8.8862 2.0416 1.1997 36 1 8.6947 1.1232 -3.6622 37 1 9.7625 1.3321 -2.2535 38 1 8.3847 -1.2654 -3.0730 39 1 10.1073 -0.8843 -3.3101 40 1 9.4524 -1.0564 -1.6642 41 1 5.9559 1.6871 -4.1776 42 1 6.7163 0.0784 -4.1344 43 1 5.0225 0.2759 -3.6246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346511693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:33 Heat of formation + Delta-G solvation = -5.496454 kcal Electronic energy + Delta-G solvation = -22828.130082 eV Core-core repulsion = 19680.680580 eV Total energy + Delta-G solvation = -3147.449502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24280 -40.24446 -37.02824 -35.12240 -34.48402 -33.41689 -33.31901 -30.24063 -29.88670 -27.59807 -26.97974 -25.11611 -24.31459 -22.81024 -22.12288 -20.71426 -19.91670 -18.08284 -17.75202 -17.17666 -16.58586 -16.22408 -15.89767 -15.75160 -15.51681 -14.95202 -14.73029 -14.24579 -14.17063 -14.01262 -13.89362 -13.79399 -13.60068 -13.31145 -13.25311 -13.13998 -13.03262 -12.72758 -12.69041 -12.43978 -12.35252 -12.12099 -11.98253 -11.91385 -11.77671 -11.42042 -10.91658 -10.43208 -9.47145 -9.18486 -8.67976 -8.34992 -6.16614 0.99677 1.21462 1.31872 1.40949 1.71589 2.06611 2.24442 2.77986 2.89338 3.05287 3.89114 3.93047 3.98545 4.13616 4.17659 4.18860 4.33682 4.40065 4.44370 4.54273 4.57747 4.59648 4.71988 4.76481 4.79272 4.86175 4.88646 4.96519 5.08680 5.10675 5.15991 5.16818 5.24369 5.29658 5.36630 5.43122 5.62406 5.72246 6.19304 6.22861 6.34100 6.42614 6.65884 7.08422 7.53884 7.93540 8.73421 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.006724 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.334382 B = 4163.027609 C = 5171.869457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.105 3.895 4 N -0.484 5.484 5 C -0.316 4.316 6 H 0.084 0.916 7 C 0.030 3.970 8 N -0.906 5.906 9 Si 0.926 3.074 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.272 1.272 13 C 0.557 3.443 14 O -0.621 6.621 15 C -0.251 4.251 16 C -0.171 4.171 17 C -0.014 4.014 18 C -0.069 4.069 19 N -0.432 5.432 20 C 0.087 3.913 21 C -0.163 4.163 22 C 0.079 3.921 23 C -0.073 4.073 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.276 0.724 32 H 0.149 0.851 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -4.516 -9.228 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.018 4.018 4 N -0.205 5.205 5 C -0.445 4.445 6 H 0.102 0.898 7 C -0.173 4.173 8 N -0.544 5.544 9 Si 0.753 3.247 10 H -0.182 1.182 11 H -0.218 1.218 12 H -0.197 1.197 13 C 0.350 3.650 14 O -0.509 6.509 15 C -0.260 4.260 16 C -0.194 4.194 17 C -0.122 4.122 18 C -0.126 4.126 19 N -0.110 5.110 20 C -0.032 4.032 21 C -0.220 4.220 22 C -0.039 4.039 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.921 -4.470 -9.710 13.304 hybrid contribution -0.910 0.789 0.597 1.344 sum 7.011 -3.681 -9.113 12.073 Atomic orbital electron populations 1.21675 0.93145 1.02875 1.02080 1.21733 0.97568 0.95879 1.01256 1.21719 0.82485 0.97892 0.99665 1.43576 1.04227 1.66927 1.05744 1.18923 1.20894 1.09171 0.95471 0.89816 1.25928 0.98411 0.97427 0.95520 1.69707 1.40004 1.31932 1.12718 0.86131 0.80768 0.78847 0.78979 1.18232 1.21775 1.19703 1.18028 0.87181 0.77009 0.82754 1.90518 1.71144 1.57532 1.31712 1.20249 0.92185 1.18414 0.95185 1.22908 0.91119 1.05916 0.99463 1.20704 0.97282 1.10270 0.83912 1.20270 0.91393 1.02978 0.97955 1.43756 1.05547 1.54268 1.07406 1.22182 0.86578 0.99005 0.95475 1.22129 1.02953 0.93863 1.03088 1.20434 0.83496 1.03572 0.96367 1.20359 1.02049 1.02532 0.88071 0.92341 0.92287 0.90632 0.93192 0.92448 0.92622 0.92503 0.91467 0.83333 0.90513 0.89554 0.91154 0.87854 0.87306 0.93100 0.87909 0.92740 0.90678 0.89171 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.91 71.98 0.71 -3.58 16 2 C -0.13 -5.05 6.22 30.59 0.19 -4.86 16 3 C 0.10 4.93 3.44 86.38 0.30 5.23 16 4 N -0.48 -25.59 2.07 -639.49 -1.32 -26.91 16 5 C -0.32 -17.60 6.87 84.07 0.58 -17.03 16 6 H 0.08 5.02 6.03 -2.91 -0.02 5.00 16 7 C 0.03 1.66 5.50 84.93 0.47 2.12 16 8 N -0.91 -51.58 13.96 21.67 0.30 -51.27 16 9 Si 0.93 44.92 24.83 68.60 1.70 46.62 16 10 H -0.26 -11.57 7.09 99.48 0.71 -10.86 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.27 -13.66 6.32 99.48 0.63 -13.03 16 13 C 0.56 29.50 7.58 86.59 0.66 30.16 16 14 O -0.62 -33.44 14.57 -4.19 -0.06 -33.50 16 15 C -0.25 -12.09 6.15 -19.04 -0.12 -12.20 16 16 C -0.17 -8.01 9.08 23.62 0.21 -7.79 16 17 C -0.01 -0.51 6.85 40.98 0.28 -0.23 16 18 C -0.07 -1.83 10.06 71.24 0.72 -1.11 16 19 N -0.43 -13.74 2.69 -495.39 -1.33 -15.07 16 20 C 0.09 1.69 6.08 86.38 0.53 2.22 16 21 C -0.16 -2.67 10.24 71.98 0.74 -1.94 16 22 C 0.08 3.05 6.89 41.80 0.29 3.33 16 23 C -0.07 -2.30 9.19 71.24 0.65 -1.65 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.60 4.06 -2.39 -0.01 2.59 16 30 H 0.06 2.72 7.46 -2.39 -0.02 2.70 16 31 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.15 7.99 5.08 -2.91 -0.01 7.98 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 34 H 0.09 1.70 6.94 -2.38 -0.02 1.69 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.10 1.65 7.51 -2.39 -0.02 1.63 16 37 H 0.11 1.65 6.90 -2.39 -0.02 1.63 16 38 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 39 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.09 2.08 7.56 -2.39 -0.02 2.06 16 43 H 0.07 2.59 6.66 -2.39 -0.02 2.58 16 Total: -1.00 -70.39 338.74 6.41 -63.98 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.91 Total: 23.47 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 6.20 Total: -7.32 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -2.35 Total: -93.25 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.06 Total: -33.50 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.70 Total: 46.62 kcal Total: -70.39 6.41 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346511693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.483 kcal (2) G-P(sol) polarization free energy of solvation -70.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds