Wall clock time and date at job start Tue Mar 31 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 H 1.08994 * 109.46575 * 55.00636 * 3 2 1 5 5 C 1.50698 * 109.46962 * 175.00132 * 3 2 1 6 6 H 1.08003 * 119.99764 * 120.00151 * 5 3 2 7 7 C 1.37871 * 120.00415 * 300.00212 * 5 3 2 8 8 N 1.31518 * 120.00123 * 180.02562 * 7 5 3 9 9 Si 1.86809 * 120.00021 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47275 * 89.99718 * 9 7 5 11 11 H 1.48499 * 109.46763 * 210.00005 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99940 * 9 7 5 13 13 N 1.46492 * 109.47108 * 295.00565 * 3 2 1 14 14 C 1.34775 * 120.00236 * 85.00212 * 13 3 2 15 15 O 1.21624 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.47262 * 120.00113 * 179.97438 * 14 13 3 17 17 C 1.46691 * 126.94257 * 0.03940 * 16 14 13 18 18 C 1.34490 * 106.32822 * 179.72370 * 17 16 14 19 19 N 1.36440 * 108.86003 * 0.38710 * 18 17 16 20 20 C 1.46506 * 124.84946 * 179.85564 * 19 18 17 21 21 C 1.52997 * 109.47289 * 299.69685 * 20 19 18 22 22 C 1.52992 * 109.46999 * 59.70153 * 20 19 18 23 23 C 1.34659 * 110.30155 * 359.59265 * 19 18 17 24 24 C 1.50694 * 125.80696 * 180.20765 * 23 19 18 25 25 H 1.08996 * 109.47488 * 59.99006 * 1 2 3 26 26 H 1.08997 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46637 * 299.99537 * 1 2 3 28 28 H 1.09001 * 109.46488 * 240.00190 * 2 1 3 29 29 H 1.09001 * 109.47085 * 120.00801 * 2 1 3 30 30 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 31 31 H 0.97008 * 120.00314 * 264.99855 * 13 3 2 32 32 H 1.07996 * 126.83579 * 359.96016 * 17 16 14 33 33 H 1.08002 * 125.56618 * 180.22200 * 18 17 16 34 34 H 1.08998 * 109.46566 * 179.69419 * 20 19 18 35 35 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46832 * 60.00146 * 21 20 19 37 37 H 1.09004 * 109.47261 * 300.00128 * 21 20 19 38 38 H 1.09001 * 109.47066 * 299.99819 * 22 20 19 39 39 H 1.08996 * 109.47747 * 59.99485 * 22 20 19 40 40 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.47099 * 89.99907 * 24 23 19 42 42 H 1.09000 * 109.46982 * 210.00118 * 24 23 19 43 43 H 1.09007 * 109.47124 * 329.99843 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4541 0.8802 1.3360 9 14 3.0965 0.1086 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7940 0.2345 3.8750 12 1 1.7879 0.8071 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3667 15 8 -0.3417 2.6319 -0.4315 16 6 0.0457 3.3234 -2.6248 17 6 0.8560 3.4505 -3.8410 18 6 0.0994 4.1164 -4.7315 19 7 -1.1014 4.4129 -4.1556 20 6 -2.1904 5.1373 -4.8159 21 6 -1.7048 6.5308 -5.2198 22 6 -2.6310 4.3691 -6.0635 23 6 -1.1449 3.9398 -2.8956 24 6 -2.3072 4.0683 -1.9452 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 5.8772 0.4824 2.1130 31 1 2.2719 2.1232 -1.9978 32 1 1.8589 3.0796 -3.9926 33 1 0.3952 4.3764 -5.7372 34 1 -3.0327 5.2305 -4.1303 35 1 -2.5148 7.0695 -5.7114 36 1 -0.8625 6.4374 -5.9053 37 1 -1.3909 7.0780 -4.3309 38 1 -1.7886 4.2757 -6.7490 39 1 -2.9769 3.3764 -5.7757 40 1 -3.4415 4.9078 -6.5544 41 1 -2.9694 3.2105 -2.0630 42 1 -1.9367 4.1033 -0.9207 43 1 -2.8564 4.9840 -2.1645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346719886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:53 Heat of formation + Delta-G solvation = 0.656670 kcal Electronic energy + Delta-G solvation = -22225.909913 eV Core-core repulsion = 19078.727230 eV Total energy + Delta-G solvation = -3147.182683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34512 -38.63529 -35.50814 -34.98000 -32.28492 -31.56342 -31.30304 -29.59105 -27.69713 -27.42347 -26.06403 -23.10100 -22.38757 -21.99985 -20.09997 -19.10976 -18.52293 -17.30940 -16.63744 -15.68695 -15.32706 -15.19743 -14.73940 -14.43251 -14.04527 -13.58591 -13.36063 -13.24902 -12.94230 -12.77518 -12.72354 -12.52349 -12.34364 -12.28348 -12.13636 -11.75618 -11.65899 -11.49778 -11.38653 -11.29453 -10.95898 -10.75707 -10.51057 -9.81163 -9.43119 -9.10076 -8.89658 -8.64600 -8.42826 -8.01462 -7.73026 -6.11604 -4.12778 2.11686 2.65816 2.80346 3.31129 3.42264 3.48954 4.22753 4.25839 4.40160 4.43300 4.55853 4.63713 4.80585 5.04766 5.10030 5.22572 5.23398 5.29724 5.34485 5.38883 5.59167 5.70475 5.74331 5.76707 5.83041 6.10812 6.14501 6.15407 6.17333 6.30733 6.46440 6.79718 6.83561 6.99828 7.00648 7.11432 7.25738 7.39592 7.45182 7.51068 7.69514 8.33785 8.76767 8.88949 9.25195 9.51345 11.00697 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004171 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.015488 B = 6711.115331 C = 7102.892868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.244 3.756 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.579 3.421 15 O -0.563 6.563 16 C -0.223 4.223 17 C -0.165 4.165 18 C -0.021 4.021 19 N -0.440 5.440 20 C 0.121 3.879 21 C -0.162 4.162 22 C -0.162 4.162 23 C 0.093 3.907 24 C -0.090 4.090 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.393 0.607 32 H 0.144 0.856 33 H 0.159 0.841 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 8.201 -14.931 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.533 5.533 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.344 5.344 14 C 0.367 3.633 15 O -0.445 6.445 16 C -0.233 4.233 17 C -0.190 4.190 18 C -0.147 4.147 19 N -0.118 5.118 20 C 0.019 3.981 21 C -0.220 4.220 22 C -0.219 4.219 23 C -0.022 4.022 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.541 8.294 -14.321 23.398 hybrid contribution 0.100 -0.519 0.190 0.562 sum -16.441 7.775 -14.130 23.030 Atomic orbital electron populations 1.21869 0.96956 0.98758 1.02417 1.22274 0.94405 1.00081 1.00839 1.19092 0.95369 0.88402 0.83148 0.93400 1.21099 0.88828 1.39296 1.07674 0.90265 1.24837 0.94846 0.95240 0.97685 1.69881 1.08687 1.44885 1.29806 0.86895 0.81030 0.79928 0.80808 1.20332 1.22331 1.18400 1.45932 1.14884 1.55944 1.17608 1.17306 0.82159 0.78008 0.85849 1.90672 1.51980 1.61340 1.40474 1.20424 0.95597 1.11116 0.96157 1.22068 0.99799 1.04288 0.92826 1.21440 0.86442 1.07165 0.99657 1.43754 1.13202 1.43977 1.10869 1.21445 0.89182 0.92027 0.95461 1.22168 1.02277 0.95015 1.02546 1.22159 1.02162 1.00910 0.96706 1.20254 0.97277 0.99247 0.85451 1.20523 0.93820 1.00915 0.99502 0.92658 0.95277 0.92938 0.92441 0.93009 0.92431 0.77329 0.83792 0.82318 0.88316 0.90831 0.91640 0.91657 0.91647 0.91708 0.90828 0.90966 0.87854 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.14 -3.20 5.11 -26.73 -0.14 -3.34 16 3 C 0.24 6.06 1.83 -69.09 -0.13 5.93 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.53 -14.86 9.31 -34.44 -0.32 -15.18 16 6 H 0.08 2.33 7.98 -52.48 -0.42 1.92 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 9 Si 0.88 22.40 24.41 -169.99 -4.15 18.25 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 13 N -0.70 -15.03 5.02 -56.07 -0.28 -15.31 16 14 C 0.58 12.00 6.38 -12.59 -0.08 11.92 16 15 O -0.56 -12.81 11.94 5.26 0.06 -12.75 16 16 C -0.22 -3.85 6.29 -103.35 -0.65 -4.50 16 17 C -0.17 -2.40 10.56 -37.50 -0.40 -2.79 16 18 C -0.02 -0.25 10.17 -16.83 -0.17 -0.42 16 19 N -0.44 -5.14 2.57 -105.46 -0.27 -5.41 16 20 C 0.12 0.96 3.45 -67.93 -0.23 0.73 16 21 C -0.16 -1.07 9.23 37.16 0.34 -0.73 16 22 C -0.16 -1.04 9.22 37.15 0.34 -0.70 16 23 C 0.09 1.37 6.89 -81.88 -0.56 0.81 16 24 C -0.09 -1.17 9.34 36.00 0.34 -0.84 16 25 H 0.05 1.17 5.64 -51.93 -0.29 0.88 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.16 7.84 -51.92 -0.41 0.76 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.05 1.26 3.21 -51.93 -0.17 1.09 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.39 7.76 7.66 -40.82 -0.31 7.44 16 32 H 0.14 1.91 7.69 -52.49 -0.40 1.50 16 33 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.10 0.72 6.47 -51.93 -0.34 0.38 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 7.89 -51.93 -0.41 0.02 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.42 7.88 -51.93 -0.41 0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.61 6.47 -51.93 -0.34 1.27 16 43 H 0.05 0.55 6.96 -51.92 -0.36 0.19 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -32.81 335.79 -7.01 -39.82 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.76 Total: 6.43 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.44 Total: -9.72 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.22 Total: -47.10 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.06 Total: -12.75 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.15 Total: 18.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.81 -7.01 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346719886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.477 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds