Wall clock time and date at job start Tue Mar 31 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 H 1.08994 * 109.46575 * 55.00636 * 3 2 1 5 5 C 1.50698 * 109.46962 * 175.00132 * 3 2 1 6 6 H 1.08003 * 119.99764 * 120.00151 * 5 3 2 7 7 C 1.37871 * 120.00415 * 300.00212 * 5 3 2 8 8 N 1.31518 * 120.00123 * 180.02562 * 7 5 3 9 9 Si 1.86809 * 120.00021 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47275 * 89.99718 * 9 7 5 11 11 H 1.48499 * 109.46763 * 210.00005 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99940 * 9 7 5 13 13 N 1.46492 * 109.47108 * 295.00565 * 3 2 1 14 14 C 1.34775 * 120.00236 * 85.00212 * 13 3 2 15 15 O 1.21624 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.47262 * 120.00113 * 179.97438 * 14 13 3 17 17 C 1.46691 * 126.94257 * 0.03940 * 16 14 13 18 18 C 1.34490 * 106.32822 * 179.72370 * 17 16 14 19 19 N 1.36440 * 108.86003 * 0.38710 * 18 17 16 20 20 C 1.46506 * 124.84946 * 179.85564 * 19 18 17 21 21 C 1.52997 * 109.47289 * 299.69685 * 20 19 18 22 22 C 1.52992 * 109.46999 * 59.70153 * 20 19 18 23 23 C 1.34659 * 110.30155 * 359.59265 * 19 18 17 24 24 C 1.50694 * 125.80696 * 180.20765 * 23 19 18 25 25 H 1.08996 * 109.47488 * 59.99006 * 1 2 3 26 26 H 1.08997 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46637 * 299.99537 * 1 2 3 28 28 H 1.09001 * 109.46488 * 240.00190 * 2 1 3 29 29 H 1.09001 * 109.47085 * 120.00801 * 2 1 3 30 30 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 31 31 H 0.97008 * 120.00314 * 264.99855 * 13 3 2 32 32 H 1.07996 * 126.83579 * 359.96016 * 17 16 14 33 33 H 1.08002 * 125.56618 * 180.22200 * 18 17 16 34 34 H 1.08998 * 109.46566 * 179.69419 * 20 19 18 35 35 H 1.09002 * 109.47153 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.46832 * 60.00146 * 21 20 19 37 37 H 1.09004 * 109.47261 * 300.00128 * 21 20 19 38 38 H 1.09001 * 109.47066 * 299.99819 * 22 20 19 39 39 H 1.08996 * 109.47747 * 59.99485 * 22 20 19 40 40 H 1.09002 * 109.47103 * 179.97438 * 22 20 19 41 41 H 1.09001 * 109.47099 * 89.99907 * 24 23 19 42 42 H 1.09000 * 109.46982 * 210.00118 * 24 23 19 43 43 H 1.09007 * 109.47124 * 329.99843 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 5.4541 0.8802 1.3360 9 14 3.0965 0.1086 2.5700 10 1 2.8756 -1.3274 2.2632 11 1 3.7940 0.2345 3.8750 12 1 1.7879 0.8071 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3667 15 8 -0.3417 2.6319 -0.4315 16 6 0.0457 3.3234 -2.6248 17 6 0.8560 3.4505 -3.8410 18 6 0.0994 4.1164 -4.7315 19 7 -1.1014 4.4129 -4.1556 20 6 -2.1904 5.1373 -4.8159 21 6 -1.7048 6.5308 -5.2198 22 6 -2.6310 4.3691 -6.0635 23 6 -1.1449 3.9398 -2.8956 24 6 -2.3072 4.0683 -1.9452 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 5.8772 0.4824 2.1130 31 1 2.2719 2.1232 -1.9978 32 1 1.8589 3.0796 -3.9926 33 1 0.3952 4.3764 -5.7372 34 1 -3.0327 5.2305 -4.1303 35 1 -2.5148 7.0695 -5.7114 36 1 -0.8625 6.4374 -5.9053 37 1 -1.3909 7.0780 -4.3309 38 1 -1.7886 4.2757 -6.7490 39 1 -2.9769 3.3764 -5.7757 40 1 -3.4415 4.9078 -6.5544 41 1 -2.9694 3.2105 -2.0630 42 1 -1.9367 4.1033 -0.9207 43 1 -2.8564 4.9840 -2.1645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346719886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:53 Heat of formation + Delta-G solvation = -20.517013 kcal Electronic energy + Delta-G solvation = -22226.828072 eV Core-core repulsion = 19078.727230 eV Total energy + Delta-G solvation = -3148.100842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.37702 -40.27852 -37.02445 -36.07487 -34.35587 -33.22425 -32.48761 -30.68552 -29.32098 -28.17168 -27.23570 -24.79728 -23.77630 -23.09095 -21.79068 -20.73827 -19.50785 -18.86228 -18.00685 -17.43880 -16.81355 -16.39479 -16.14965 -15.74094 -15.37982 -14.99597 -14.78405 -14.40173 -14.10888 -13.94418 -13.92619 -13.73502 -13.60819 -13.48960 -13.34472 -13.01337 -12.93147 -12.89310 -12.73338 -12.39721 -12.35015 -12.17363 -11.93511 -11.82771 -11.35202 -11.20774 -10.83954 -10.55354 -9.72725 -9.41738 -9.01039 -8.36631 -6.41765 0.88158 1.27836 1.35353 1.46766 1.58723 1.89850 2.27871 2.75461 2.79441 2.99682 3.67028 3.84158 4.00332 4.06502 4.12320 4.25575 4.27591 4.35164 4.40024 4.52791 4.59829 4.68735 4.72236 4.84318 4.84696 4.86203 4.90915 5.00438 5.05426 5.09100 5.15628 5.26396 5.26521 5.28192 5.36005 5.45751 5.55276 5.77972 5.87292 6.16019 6.25176 6.47244 6.59709 7.06243 7.22618 7.64692 8.78886 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032778 B = 0.004171 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.015488 B = 6711.115331 C = 7102.892868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.252 3.748 4 H 0.021 0.979 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.029 3.971 8 N -0.935 5.935 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.291 1.291 12 H -0.261 1.261 13 N -0.701 5.701 14 C 0.576 3.424 15 O -0.590 6.590 16 C -0.267 4.267 17 C -0.190 4.190 18 C -0.001 4.001 19 N -0.430 5.430 20 C 0.112 3.888 21 C -0.159 4.159 22 C -0.157 4.157 23 C 0.095 3.905 24 C -0.087 4.087 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.270 0.730 31 H 0.400 0.600 32 H 0.147 0.853 33 H 0.197 0.803 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 8.676 -16.932 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.147 3.853 4 H 0.039 0.961 5 C -0.572 4.572 6 H 0.070 0.930 7 C -0.171 4.171 8 N -0.574 5.574 9 Si 0.766 3.234 10 H -0.184 1.184 11 H -0.219 1.219 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.367 3.633 15 O -0.473 6.473 16 C -0.277 4.277 17 C -0.213 4.213 18 C -0.127 4.127 19 N -0.107 5.107 20 C 0.012 3.988 21 C -0.216 4.216 22 C -0.215 4.215 23 C -0.023 4.023 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.165 0.835 33 H 0.214 0.786 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.962 8.785 -16.368 26.545 hybrid contribution 0.818 -0.537 0.683 1.193 sum -18.144 8.248 -15.685 25.363 Atomic orbital electron populations 1.21734 0.95163 1.00349 1.01584 1.22187 0.95938 0.98491 1.00761 1.18740 0.93039 0.89600 0.83897 0.96147 1.21313 0.90462 1.38469 1.06931 0.92971 1.25566 0.95806 0.95846 0.99847 1.69987 1.10272 1.46287 1.30876 0.85996 0.79279 0.79949 0.78197 1.18415 1.21854 1.18529 1.45800 1.15789 1.56546 1.16710 1.17813 0.81229 0.77344 0.86918 1.90641 1.52521 1.62356 1.41830 1.20287 0.97931 1.13742 0.95769 1.22204 1.00473 1.06018 0.92632 1.21929 0.85670 1.04759 1.00380 1.44076 1.14019 1.42774 1.09824 1.21847 0.88239 0.92580 0.96137 1.22163 1.03357 0.93936 1.02153 1.22149 1.03109 1.00317 0.95901 1.20424 0.96750 0.98296 0.86824 1.20485 0.93571 1.02909 0.97449 0.92993 0.92345 0.94293 0.91728 0.93734 0.92080 0.76554 0.83533 0.78649 0.87396 0.88261 0.91325 0.93085 0.91298 0.92940 0.88305 0.90245 0.90840 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.14 -6.27 5.11 30.60 0.16 -6.11 16 3 C 0.25 12.85 1.83 44.25 0.08 12.93 16 4 H 0.02 1.16 6.63 -2.39 -0.02 1.15 16 5 C -0.53 -30.86 9.31 25.60 0.24 -30.62 16 6 H 0.05 3.22 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.69 5.45 84.65 0.46 2.15 16 8 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 9 Si 0.94 46.60 24.41 68.60 1.67 48.28 16 10 H -0.26 -12.03 6.83 99.48 0.68 -11.35 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.26 -12.91 6.53 99.48 0.65 -12.27 16 13 N -0.70 -31.23 5.02 -449.55 -2.26 -33.49 16 14 C 0.58 24.56 6.38 86.62 0.55 25.11 16 15 O -0.59 -27.65 11.94 -4.11 -0.05 -27.70 16 16 C -0.27 -9.27 6.29 -19.04 -0.12 -9.39 16 17 C -0.19 -5.37 10.56 23.62 0.25 -5.13 16 18 C 0.00 -0.02 10.17 83.12 0.85 0.82 16 19 N -0.43 -8.99 2.57 -487.58 -1.25 -10.24 16 20 C 0.11 1.38 3.45 44.99 0.15 1.54 16 21 C -0.16 -1.49 9.23 71.98 0.66 -0.83 16 22 C -0.16 -1.42 9.22 71.98 0.66 -0.75 16 23 C 0.10 2.70 6.89 41.78 0.29 2.98 16 24 C -0.09 -2.16 9.34 71.23 0.67 -1.50 16 25 H 0.05 2.18 5.64 -2.39 -0.01 2.17 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.70 7.84 -2.38 -0.02 1.68 16 28 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.04 2.12 3.21 -2.39 -0.01 2.11 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.40 16.45 7.66 -92.70 -0.71 15.74 16 32 H 0.15 3.90 7.69 -2.91 -0.02 3.88 16 33 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.11 1.16 6.47 -2.39 -0.02 1.14 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.62 7.89 -2.39 -0.02 0.60 16 37 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.07 0.59 7.88 -2.39 -0.02 0.57 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.32 6.47 -2.39 -0.02 2.30 16 43 H 0.09 1.55 6.96 -2.38 -0.02 1.54 16 Total: -1.00 -73.26 335.79 4.14 -69.12 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.21 Total: 25.34 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.51 Total: -13.62 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.21 Total: -101.41 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.67 Total: 48.28 kcal Total: -73.26 4.14 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346719886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.603 kcal (2) G-P(sol) polarization free energy of solvation -73.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds