Wall clock time and date at job start Tue Mar 31 2020 00:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 110.99982 * 2 1 4 4 C 1.50694 * 109.47293 * 66.04623 * 3 2 1 5 5 H 1.08004 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00354 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99685 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00107 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46698 * 60.00600 * 8 6 4 10 10 H 1.48502 * 109.46868 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47358 * 300.00375 * 8 6 4 12 12 C 1.46901 * 110.99695 * 236.04609 * 2 1 3 13 13 C 1.50700 * 109.47362 * 293.95420 * 12 2 1 14 14 C 1.38084 * 119.58303 * 95.02237 * 13 12 2 15 15 C 1.38793 * 119.28603 * 179.97438 * 14 13 12 16 16 C 1.38414 * 118.48500 * 359.74296 * 15 14 13 17 17 C 1.38884 * 119.11452 * 0.49982 * 16 15 14 18 18 O 1.35678 * 119.68480 * 179.76804 * 17 16 15 19 19 C 1.42895 * 116.99784 * 179.72276 * 18 17 16 20 20 C 1.53006 * 109.47036 * 60.00534 * 19 18 17 21 21 C 1.52997 * 109.47356 * 300.00391 * 19 18 17 22 22 C 1.52999 * 109.47283 * 179.97438 * 19 18 17 23 23 N 1.31930 * 119.58255 * 275.00307 * 13 12 2 24 24 H 1.09008 * 109.47151 * 183.95497 * 1 2 3 25 25 H 1.09000 * 109.47055 * 303.95406 * 1 2 3 26 26 H 1.08997 * 109.47091 * 63.95500 * 1 2 3 27 27 H 1.09002 * 109.46977 * 186.05004 * 3 2 1 28 28 H 1.09005 * 109.47285 * 306.04820 * 3 2 1 29 29 H 0.96996 * 119.99396 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47180 * 173.95052 * 12 2 1 31 31 H 1.09001 * 109.47138 * 53.95676 * 12 2 1 32 32 H 1.07998 * 120.36072 * 359.95935 * 14 13 12 33 33 H 1.08002 * 120.75790 * 180.02562 * 15 14 13 34 34 H 1.08003 * 120.44908 * 180.24731 * 16 15 14 35 35 H 1.09001 * 109.47002 * 299.99477 * 20 19 18 36 36 H 1.08993 * 109.46955 * 59.99914 * 20 19 18 37 37 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47140 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47230 * 299.99260 * 21 19 18 40 40 H 1.09001 * 109.47375 * 60.00099 * 21 19 18 41 41 H 1.09001 * 109.47362 * 300.00863 * 22 19 18 42 42 H 1.09002 * 109.46716 * 60.00223 * 22 19 18 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7128 4.0015 0.6153 8 14 1.5839 4.1864 3.1387 9 1 2.1758 3.4286 4.2703 10 1 2.1170 5.5724 3.1391 11 1 0.1068 4.2236 3.2866 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 0.5029 -2.7165 -1.5850 15 6 0.1788 -4.0571 -1.4297 16 6 1.0137 -4.8539 -0.6655 17 6 2.1352 -4.2861 -0.0749 18 8 2.9590 -5.0554 0.6804 19 6 4.0989 -4.4139 1.2557 20 6 3.6369 -3.2812 2.1748 21 6 4.9778 -3.8409 0.1422 22 6 4.9021 -5.4326 2.0669 23 7 2.4106 -3.0037 -0.2461 24 1 -0.3634 -1.0253 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 2.9880 4.9173 0.7777 30 1 3.0797 -0.6611 -1.1757 31 1 1.5611 -0.3872 -2.0628 32 1 -0.1253 -2.0684 -2.1781 33 1 -0.7023 -4.4703 -1.8981 34 1 0.7939 -5.9022 -0.5270 35 1 3.0645 -2.5553 1.5973 36 1 3.0109 -3.6895 2.9681 37 1 4.5065 -2.7922 2.6140 38 1 5.8475 -3.3519 0.5811 39 1 5.3070 -4.6478 -0.5125 40 1 4.4054 -3.1149 -0.4353 41 1 4.2757 -5.8406 2.8602 42 1 5.2312 -6.2398 1.4125 43 1 5.7714 -4.9432 2.5061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351700130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:47 Heat of formation + Delta-G solvation = 5.695246 kcal Electronic energy + Delta-G solvation = -22329.032785 eV Core-core repulsion = 19182.068591 eV Total energy + Delta-G solvation = -3146.964194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78235 -38.58321 -36.38279 -33.97812 -32.68950 -32.27383 -30.50454 -27.32014 -27.28422 -27.09473 -26.82822 -24.26424 -23.28757 -21.83316 -20.38450 -20.22188 -17.11878 -16.63050 -16.23331 -15.84570 -15.49251 -14.94779 -14.82954 -14.38874 -14.18312 -13.87050 -13.66926 -13.52964 -12.91231 -12.45302 -12.42193 -12.24439 -11.94274 -11.90451 -11.82453 -11.72491 -11.42877 -11.36676 -11.04903 -10.88436 -10.74162 -10.62205 -10.50082 -10.40302 -9.90560 -9.55270 -9.26210 -9.00616 -8.43488 -8.23562 -7.26272 -6.02264 -4.03264 1.31980 1.46346 3.15907 3.34202 3.38095 3.41376 3.90534 4.34122 4.44710 4.87118 4.94325 4.96482 5.09532 5.14017 5.23458 5.29080 5.32512 5.34819 5.57786 5.68524 5.72489 5.82449 5.86307 5.92113 5.95310 6.09057 6.12041 6.16443 6.19326 6.21590 6.31433 6.34380 6.52963 6.64910 6.74412 6.82470 7.26704 7.31249 7.52750 7.78767 8.05705 8.15770 8.18670 8.52762 9.03649 9.60636 11.08598 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.004809 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.951386 B = 5820.967163 C = 6759.129573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.195 3.805 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.098 3.902 13 C 0.190 3.810 14 C -0.210 4.210 15 C -0.043 4.043 16 C -0.208 4.208 17 C 0.327 3.673 18 O -0.305 6.305 19 C 0.121 3.879 20 C -0.184 4.184 21 C -0.181 4.181 22 C -0.139 4.139 23 N -0.509 5.509 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.012 0.988 27 H 0.032 0.968 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -17.726 -3.302 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.070 3.930 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.031 4.031 13 C 0.053 3.947 14 C -0.230 4.230 15 C -0.069 4.069 16 C -0.229 4.229 17 C 0.149 3.851 18 O -0.213 6.213 19 C 0.083 3.917 20 C -0.242 4.242 21 C -0.238 4.238 22 C -0.196 4.196 23 N -0.232 5.232 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.443 -17.702 -2.426 17.873 hybrid contribution -1.093 0.721 -0.200 1.324 sum -0.650 -16.981 -2.626 17.195 Atomic orbital electron populations 1.22289 0.88888 0.99622 1.00624 1.62089 1.06913 1.17744 1.38601 1.19748 0.95500 0.81003 0.96736 1.21097 1.34872 0.96848 1.01637 0.91950 1.24969 0.95296 0.97311 0.96939 1.69947 1.38319 1.11517 1.34076 0.86566 0.78675 0.78329 0.83870 1.20180 1.21359 1.20308 1.21005 1.01496 0.87025 0.93582 1.21092 0.89315 0.95509 0.88813 1.21816 0.99712 0.96275 1.05240 1.21283 0.97673 0.93160 0.94742 1.20955 0.96105 1.01710 1.04108 1.19785 0.88668 0.87414 0.89250 1.86243 1.36176 1.37125 1.61798 1.21695 0.83695 0.93051 0.93219 1.22591 1.02715 0.99284 0.99569 1.22553 1.00246 1.02107 0.98909 1.21835 0.99489 0.98637 0.99649 1.67391 1.33054 1.03657 1.19125 0.93653 0.90647 0.96938 0.95028 0.99015 0.92881 0.89555 0.93974 0.85063 0.84671 0.84832 0.87624 0.93114 0.91701 0.91630 0.93167 0.88693 0.91893 0.92054 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.02 60.07 0.54 1.21 16 2 N -0.53 -11.37 4.74 -245.82 -1.17 -12.54 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.51 -14.16 8.46 -34.44 -0.29 -14.45 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.10 1.76 5.28 -4.98 -0.03 1.74 16 13 C 0.19 3.08 5.64 -82.61 -0.47 2.62 16 14 C -0.21 -2.84 8.35 -39.43 -0.33 -3.17 16 15 C -0.04 -0.51 10.17 -39.31 -0.40 -0.90 16 16 C -0.21 -2.68 10.04 -39.28 -0.39 -3.07 16 17 C 0.33 4.98 6.77 -17.12 -0.12 4.86 16 18 O -0.30 -4.51 9.77 -18.74 -0.18 -4.69 16 19 C 0.12 1.63 1.11 -90.62 -0.10 1.53 16 20 C -0.18 -2.79 8.35 37.16 0.31 -2.48 16 21 C -0.18 -2.42 8.35 37.16 0.31 -2.11 16 22 C -0.14 -1.47 8.84 37.16 0.33 -1.15 16 23 N -0.51 -8.38 4.49 -9.55 -0.04 -8.42 16 24 H 0.04 0.79 6.40 -51.92 -0.33 0.45 16 25 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 31 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.11 1.92 5.58 -51.93 -0.29 1.63 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.47 5.58 -51.93 -0.29 1.18 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -30.14 344.77 -8.32 -38.45 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.08 Total: 0.05 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.75 Total: -8.87 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.47 Total: -46.79 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.18 Total: -4.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.14 -8.32 -38.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351700130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.150 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds