Wall clock time and date at job start Tue Mar 31 2020 00:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 110.99982 * 2 1 4 4 C 1.50694 * 109.47293 * 66.04623 * 3 2 1 5 5 H 1.08004 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00354 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99685 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00107 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46698 * 60.00600 * 8 6 4 10 10 H 1.48502 * 109.46868 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47358 * 300.00375 * 8 6 4 12 12 C 1.46901 * 110.99695 * 236.04609 * 2 1 3 13 13 C 1.50700 * 109.47362 * 293.95420 * 12 2 1 14 14 C 1.38084 * 119.58303 * 95.02237 * 13 12 2 15 15 C 1.38793 * 119.28603 * 179.97438 * 14 13 12 16 16 C 1.38414 * 118.48500 * 359.74296 * 15 14 13 17 17 C 1.38884 * 119.11452 * 0.49982 * 16 15 14 18 18 O 1.35678 * 119.68480 * 179.76804 * 17 16 15 19 19 C 1.42895 * 116.99784 * 179.72276 * 18 17 16 20 20 C 1.53006 * 109.47036 * 60.00534 * 19 18 17 21 21 C 1.52997 * 109.47356 * 300.00391 * 19 18 17 22 22 C 1.52999 * 109.47283 * 179.97438 * 19 18 17 23 23 N 1.31930 * 119.58255 * 275.00307 * 13 12 2 24 24 H 1.09008 * 109.47151 * 183.95497 * 1 2 3 25 25 H 1.09000 * 109.47055 * 303.95406 * 1 2 3 26 26 H 1.08997 * 109.47091 * 63.95500 * 1 2 3 27 27 H 1.09002 * 109.46977 * 186.05004 * 3 2 1 28 28 H 1.09005 * 109.47285 * 306.04820 * 3 2 1 29 29 H 0.96996 * 119.99396 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47180 * 173.95052 * 12 2 1 31 31 H 1.09001 * 109.47138 * 53.95676 * 12 2 1 32 32 H 1.07998 * 120.36072 * 359.95935 * 14 13 12 33 33 H 1.08002 * 120.75790 * 180.02562 * 15 14 13 34 34 H 1.08003 * 120.44908 * 180.24731 * 16 15 14 35 35 H 1.09001 * 109.47002 * 299.99477 * 20 19 18 36 36 H 1.08993 * 109.46955 * 59.99914 * 20 19 18 37 37 H 1.09000 * 109.47050 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47140 * 180.02562 * 21 19 18 39 39 H 1.09001 * 109.47230 * 299.99260 * 21 19 18 40 40 H 1.09001 * 109.47375 * 60.00099 * 21 19 18 41 41 H 1.09001 * 109.47362 * 300.00863 * 22 19 18 42 42 H 1.09002 * 109.46716 * 60.00223 * 22 19 18 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7128 4.0015 0.6153 8 14 1.5839 4.1864 3.1387 9 1 2.1758 3.4286 4.2703 10 1 2.1170 5.5724 3.1391 11 1 0.1068 4.2236 3.2866 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9729 14 6 0.5029 -2.7165 -1.5850 15 6 0.1788 -4.0571 -1.4297 16 6 1.0137 -4.8539 -0.6655 17 6 2.1352 -4.2861 -0.0749 18 8 2.9590 -5.0554 0.6804 19 6 4.0989 -4.4139 1.2557 20 6 3.6369 -3.2812 2.1748 21 6 4.9778 -3.8409 0.1422 22 6 4.9021 -5.4326 2.0669 23 7 2.4106 -3.0037 -0.2461 24 1 -0.3634 -1.0253 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 2.9880 4.9173 0.7777 30 1 3.0797 -0.6611 -1.1757 31 1 1.5611 -0.3872 -2.0628 32 1 -0.1253 -2.0684 -2.1781 33 1 -0.7023 -4.4703 -1.8981 34 1 0.7939 -5.9022 -0.5270 35 1 3.0645 -2.5553 1.5973 36 1 3.0109 -3.6895 2.9681 37 1 4.5065 -2.7922 2.6140 38 1 5.8475 -3.3519 0.5811 39 1 5.3070 -4.6478 -0.5125 40 1 4.4054 -3.1149 -0.4353 41 1 4.2757 -5.8406 2.8602 42 1 5.2312 -6.2398 1.4125 43 1 5.7714 -4.9432 2.5061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351700130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:46 Heat of formation + Delta-G solvation = -12.943248 kcal Electronic energy + Delta-G solvation = -22329.841011 eV Core-core repulsion = 19182.068591 eV Total energy + Delta-G solvation = -3147.772419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.87728 -39.72865 -38.00056 -35.14494 -34.61901 -33.43132 -31.81652 -29.19280 -28.35163 -28.25244 -28.19639 -25.96900 -24.41462 -23.31648 -21.87651 -21.42098 -18.60269 -18.10490 -17.64764 -16.90024 -16.85872 -16.52608 -16.11936 -15.95738 -15.52845 -15.37791 -14.95906 -14.78967 -14.19025 -13.86267 -13.60899 -13.39216 -13.33057 -13.26739 -12.95970 -12.92371 -12.88687 -12.79894 -12.58425 -12.54140 -12.49231 -12.28848 -11.89866 -11.69872 -11.54413 -11.33433 -10.63298 -10.59590 -10.14669 -9.35860 -8.99387 -8.19786 -6.29492 0.21452 0.44383 1.40786 1.43860 1.51741 2.13668 2.40190 2.77157 3.12768 3.17636 3.50267 3.89864 3.92400 3.98501 4.07326 4.14329 4.25591 4.30843 4.45329 4.49976 4.63887 4.67266 4.70009 4.72373 4.83814 4.84279 4.89359 4.96100 4.99242 5.05907 5.12547 5.17897 5.20389 5.26991 5.33230 5.43117 5.53927 5.63017 5.66725 6.04356 6.30560 6.43763 6.59039 6.85372 7.05009 7.39692 8.90937 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.004809 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.951386 B = 5820.967163 C = 6759.129573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.212 3.788 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.103 3.897 13 C 0.164 3.836 14 C -0.205 4.205 15 C -0.032 4.032 16 C -0.201 4.201 17 C 0.303 3.697 18 O -0.310 6.310 19 C 0.118 3.882 20 C -0.181 4.181 21 C -0.177 4.177 22 C -0.134 4.134 23 N -0.528 5.528 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.002 0.998 28 H -0.031 1.031 29 H 0.265 0.735 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.148 0.852 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -19.633 -2.955 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.086 3.914 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.573 5.573 8 Si 0.791 3.209 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.025 4.025 13 C 0.027 3.973 14 C -0.226 4.226 15 C -0.057 4.057 16 C -0.222 4.222 17 C 0.125 3.875 18 O -0.219 6.219 19 C 0.081 3.919 20 C -0.238 4.238 21 C -0.235 4.235 22 C -0.191 4.191 23 N -0.252 5.252 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.021 0.979 28 H -0.013 1.013 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.196 0.804 34 H 0.177 0.823 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.865 -19.626 -2.089 19.756 hybrid contribution -0.689 1.236 -0.364 1.461 sum -1.554 -18.390 -2.453 18.617 Atomic orbital electron populations 1.22219 0.87420 1.00834 1.00129 1.61944 1.08286 1.15270 1.40958 1.19364 0.93630 0.83240 0.95212 1.21387 1.34947 0.97433 1.02318 0.92260 1.25858 0.94990 0.97968 1.00543 1.70072 1.39221 1.11921 1.36115 0.85478 0.78875 0.77225 0.79287 1.19686 1.20682 1.19151 1.20911 1.00361 0.88497 0.92746 1.20811 0.91120 0.94289 0.91108 1.22017 0.98556 0.97594 1.04452 1.21737 0.98379 0.91977 0.93576 1.21378 0.94898 1.03087 1.02796 1.20150 0.89848 0.87238 0.90286 1.86241 1.36507 1.37185 1.61947 1.21806 0.83691 0.93371 0.93049 1.22517 1.02448 0.99375 0.99468 1.22492 1.00127 1.01884 0.98952 1.21832 0.99506 0.98207 0.99517 1.67265 1.33777 1.04603 1.19510 0.91189 0.92650 0.96058 0.97940 1.01345 0.92662 0.91394 0.92771 0.83376 0.80387 0.82282 0.90807 0.93100 0.91314 0.90941 0.92134 0.91110 0.91473 0.90918 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.02 127.69 1.15 2.79 16 2 N -0.54 -23.96 4.74 -931.65 -4.42 -28.38 16 3 C 0.21 11.42 4.72 85.56 0.40 11.83 16 4 C -0.52 -30.04 8.46 25.60 0.22 -29.82 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 8 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.10 3.85 5.28 85.56 0.45 4.30 16 13 C 0.16 5.26 5.64 42.51 0.24 5.50 16 14 C -0.21 -5.09 8.35 22.37 0.19 -4.90 16 15 C -0.03 -0.62 10.17 22.44 0.23 -0.39 16 16 C -0.20 -4.59 10.04 22.47 0.23 -4.36 16 17 C 0.30 8.92 6.77 84.78 0.57 9.49 16 18 O -0.31 -8.84 9.77 -89.96 -0.88 -9.72 16 19 C 0.12 3.13 1.11 -10.79 -0.01 3.12 16 20 C -0.18 -5.54 8.35 71.98 0.60 -4.94 16 21 C -0.18 -4.74 8.35 71.98 0.60 -4.14 16 22 C -0.13 -2.60 8.84 71.98 0.64 -1.96 16 23 N -0.53 -17.53 4.49 -296.98 -1.33 -18.87 16 24 H 0.07 2.35 6.40 -2.38 -0.02 2.33 16 25 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.00 0.15 7.93 -2.39 -0.02 0.13 16 28 H -0.03 -1.78 8.12 -2.38 -0.02 -1.80 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.07 2.71 7.93 -2.38 -0.02 2.69 16 31 H 0.05 1.85 8.02 -2.39 -0.02 1.83 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.07 2.79 5.58 -2.39 -0.01 2.78 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 2.27 5.58 -2.39 -0.01 2.26 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.02 344.77 2.61 -64.41 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.97 Total: 14.67 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.97 Total: -12.77 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -5.47 Total: -103.34 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.88 Total: -9.72 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.02 2.61 -64.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351700130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.462 kcal (2) G-P(sol) polarization free energy of solvation -67.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds