Wall clock time and date at job start Tue Mar 31 2020 00:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47271 * 2 1 4 4 H 1.08996 * 109.46588 * 54.37689 * 3 2 1 5 5 C 1.50690 * 109.46978 * 174.37525 * 3 2 1 6 6 H 1.08002 * 120.00111 * 120.00656 * 5 3 2 7 7 C 1.37880 * 120.00487 * 299.99910 * 5 3 2 8 8 N 1.31519 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00342 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47154 * 60.00377 * 9 7 5 11 11 H 1.48505 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46964 * 300.00117 * 9 7 5 13 13 N 1.46902 * 109.47149 * 294.37940 * 3 2 1 14 14 C 1.46889 * 110.99899 * 156.02182 * 13 3 2 15 15 H 1.08997 * 109.47693 * 35.34501 * 14 13 3 16 16 C 1.53004 * 109.47040 * 275.34611 * 14 13 3 17 17 C 1.53004 * 109.47217 * 155.35337 * 14 13 3 18 18 C 1.50699 * 109.46766 * 294.99385 * 17 14 13 19 19 C 1.38093 * 119.58099 * 124.97888 * 18 17 14 20 20 C 1.38788 * 119.28524 * 180.02562 * 19 18 17 21 21 C 1.38424 * 118.48873 * 0.02562 * 20 19 18 22 22 C 1.38878 * 119.10967 * 0.02562 * 21 20 19 23 23 O 1.35678 * 119.68002 * 180.25831 * 22 21 20 24 24 C 1.42904 * 116.99723 * 179.72258 * 23 22 21 25 25 N 1.31939 * 119.58726 * 305.00363 * 18 17 14 26 26 H 1.08998 * 109.47228 * 66.33926 * 1 2 3 27 27 H 1.08995 * 109.47337 * 186.34146 * 1 2 3 28 28 H 1.09002 * 109.47116 * 306.34262 * 1 2 3 29 29 H 1.08996 * 109.46843 * 240.00111 * 2 1 3 30 30 H 1.09000 * 109.47130 * 120.00379 * 2 1 3 31 31 H 0.96995 * 120.00178 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99866 * 32.05961 * 13 3 2 33 33 H 1.09004 * 109.47448 * 175.37858 * 16 14 13 34 34 H 1.08995 * 109.47631 * 295.38610 * 16 14 13 35 35 H 1.09004 * 109.46700 * 55.38028 * 16 14 13 36 36 H 1.09003 * 109.47131 * 175.00127 * 17 14 13 37 37 H 1.08994 * 109.47476 * 54.99690 * 17 14 13 38 38 H 1.08001 * 120.35658 * 359.97438 * 19 18 17 39 39 H 1.08002 * 120.75511 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.44436 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47099 * 60.00147 * 24 23 22 42 42 H 1.09005 * 109.46803 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47220 * 299.99793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9845 0.8353 5 6 3.5405 1.4448 0.1392 6 1 4.1538 1.8866 -0.6322 7 6 4.1306 0.8829 1.2515 8 7 3.3838 0.3445 2.1908 9 14 5.9905 0.8863 1.4245 10 1 6.4851 2.2865 1.4249 11 1 6.3703 0.2263 2.6994 12 1 6.5948 0.1481 0.2863 13 7 1.6643 2.0948 -1.2615 14 6 1.6075 3.5540 -1.1031 15 1 2.3843 3.8748 -0.4090 16 6 0.2365 3.9544 -0.5544 17 6 1.8285 4.2235 -2.4610 18 6 3.2251 3.9292 -2.9446 19 6 3.4095 3.3531 -4.1860 20 6 4.6983 3.0842 -4.6251 21 6 5.7589 3.4056 -3.7956 22 6 5.4990 3.9822 -2.5593 23 8 6.5301 4.3067 -1.7392 24 6 6.1977 4.9025 -0.4836 25 7 4.2564 4.2248 -2.1765 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3634 -1.0213 0.1135 28 1 -0.3633 0.6090 0.8278 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7989 -0.0511 2.9732 32 1 0.7880 1.7342 -1.6080 33 1 0.2221 5.0268 -0.3594 34 1 -0.5336 3.7076 -1.2851 35 1 0.0442 3.4140 0.3726 36 1 1.6985 5.3010 -2.3603 37 1 1.1061 3.8358 -3.1791 38 1 2.5598 3.1136 -4.8082 39 1 4.8698 2.6345 -5.5919 40 1 6.7748 3.2105 -4.1058 41 1 5.5722 4.2178 0.0892 42 1 7.1115 5.1111 0.0729 43 1 5.6558 5.8326 -0.6548 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358301689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:07 Heat of formation + Delta-G solvation = -12.959627 kcal Electronic energy + Delta-G solvation = -22995.654590 eV Core-core repulsion = 19847.881461 eV Total energy + Delta-G solvation = -3147.773130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.16363 -37.77367 -36.78341 -33.97239 -32.09393 -31.52710 -30.65744 -28.73919 -27.35856 -25.99962 -25.97654 -22.83508 -22.52534 -21.98263 -19.87618 -19.52069 -17.72760 -16.30433 -16.11441 -15.58148 -15.50304 -15.02985 -14.45747 -14.19229 -13.77751 -13.59811 -13.44958 -12.94602 -12.83857 -12.63841 -12.35369 -11.97374 -11.84534 -11.66834 -11.45398 -11.29183 -11.08109 -11.00890 -10.76998 -10.63598 -10.44643 -10.22082 -9.87076 -9.65211 -9.52693 -9.30342 -9.03347 -8.95052 -8.26865 -7.92219 -7.10803 -5.88692 -3.90325 1.65838 1.78802 3.36858 3.41115 3.46968 3.55720 4.25936 4.51289 4.68267 5.07364 5.27225 5.41031 5.42987 5.55168 5.59134 5.65619 5.69978 5.76835 5.82060 5.96831 6.00060 6.10784 6.15301 6.19256 6.19545 6.20878 6.37954 6.42116 6.45134 6.59905 6.64618 6.86793 6.88750 6.93321 7.16016 7.27416 7.59257 7.71345 7.85481 8.03317 8.40821 8.45495 8.49065 8.87872 9.18984 9.73698 11.16864 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.009027 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.605229 B = 3101.219376 C = 4495.028241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.223 3.777 4 H 0.001 0.999 5 C -0.479 4.479 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.679 5.679 14 C 0.095 3.905 15 H 0.093 0.907 16 C -0.179 4.179 17 C -0.060 4.060 18 C 0.211 3.789 19 C -0.208 4.208 20 C -0.043 4.043 21 C -0.210 4.210 22 C 0.328 3.672 23 O -0.314 6.314 24 C 0.039 3.961 25 N -0.520 5.520 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.257 0.743 32 H 0.314 0.686 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 7.573 -9.775 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.518 4.518 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.309 5.309 14 C -0.016 4.016 15 H 0.111 0.889 16 C -0.238 4.238 17 C -0.098 4.098 18 C 0.074 3.926 19 C -0.228 4.228 20 C -0.069 4.069 21 C -0.230 4.230 22 C 0.149 3.851 23 O -0.221 6.221 24 C -0.056 4.056 25 N -0.243 5.243 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.815 7.829 -9.041 11.988 hybrid contribution 0.221 -0.438 0.163 0.517 sum -0.594 7.391 -8.878 11.567 Atomic orbital electron populations 1.21867 0.99707 0.99533 0.99430 1.21759 0.91112 1.00647 1.02867 1.19100 0.95294 0.89623 0.84410 0.98184 1.21182 0.91302 1.35447 1.03872 0.92014 1.24907 0.97517 0.96032 0.96068 1.69861 1.34448 1.40044 1.09672 0.86765 0.86598 0.78266 0.76949 1.20234 1.21659 1.20506 1.60758 1.34881 1.01980 1.33306 1.21400 0.95842 0.89969 0.94393 0.88879 1.22525 0.98833 1.01069 1.01356 1.20658 0.90574 1.00023 0.98574 1.20596 0.93515 0.89996 0.88539 1.21648 0.97478 1.05303 0.98397 1.21211 0.91978 0.95058 0.98613 1.20867 1.00721 1.07302 0.94133 1.19720 0.85839 0.91180 0.88376 1.86164 1.30371 1.76004 1.29590 1.22870 1.01771 0.98183 0.82781 1.67022 0.98278 1.23606 1.35421 0.94637 0.94608 0.94000 0.94299 0.88405 0.93275 0.86884 0.93155 0.93420 0.92447 0.90799 0.90876 0.85402 0.85020 0.85121 0.90984 0.89510 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.62 37.16 0.36 -2.49 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.44 1.84 -68.87 -0.13 5.31 16 4 H 0.00 0.02 7.07 -51.93 -0.37 -0.35 16 5 C -0.48 -13.16 8.44 -34.44 -0.29 -13.45 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.82 11.29 55.43 0.63 -25.19 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 N -0.68 -13.84 5.75 -100.96 -0.58 -14.42 16 14 C 0.10 1.73 2.32 -67.71 -0.16 1.57 16 15 H 0.09 2.03 7.26 -51.93 -0.38 1.65 16 16 C -0.18 -2.78 9.16 37.16 0.34 -2.44 16 17 C -0.06 -0.91 5.29 -27.88 -0.15 -1.06 16 18 C 0.21 3.63 5.90 -82.60 -0.49 3.14 16 19 C -0.21 -3.16 9.71 -39.43 -0.38 -3.54 16 20 C -0.04 -0.62 10.17 -39.31 -0.40 -1.02 16 21 C -0.21 -3.42 10.04 -39.28 -0.39 -3.82 16 22 C 0.33 6.21 7.49 -17.13 -0.13 6.08 16 23 O -0.31 -5.91 10.48 -18.74 -0.20 -6.10 16 24 C 0.04 0.67 10.38 101.05 1.05 1.72 16 25 N -0.52 -10.00 8.64 -9.55 -0.08 -10.08 16 26 H 0.03 0.61 6.68 -51.93 -0.35 0.26 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.31 5.88 6.37 -39.29 -0.25 5.63 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 1.00 7.34 -51.93 -0.38 0.62 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.13 1.61 7.94 -52.49 -0.42 1.19 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -29.93 349.94 -8.03 -37.97 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.05 Total: 7.10 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.01 Total: -11.68 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.04 Total: -49.70 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.20 Total: -6.10 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.93 -8.03 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.009 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds