Wall clock time and date at job start Tue Mar 31 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47271 * 2 1 4 4 H 1.08996 * 109.46588 * 54.37689 * 3 2 1 5 5 C 1.50690 * 109.46978 * 174.37525 * 3 2 1 6 6 H 1.08002 * 120.00111 * 120.00656 * 5 3 2 7 7 C 1.37880 * 120.00487 * 299.99910 * 5 3 2 8 8 N 1.31519 * 119.99737 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00342 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47154 * 60.00377 * 9 7 5 11 11 H 1.48505 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46964 * 300.00117 * 9 7 5 13 13 N 1.46902 * 109.47149 * 294.37940 * 3 2 1 14 14 C 1.46889 * 110.99899 * 156.02182 * 13 3 2 15 15 H 1.08997 * 109.47693 * 35.34501 * 14 13 3 16 16 C 1.53004 * 109.47040 * 275.34611 * 14 13 3 17 17 C 1.53004 * 109.47217 * 155.35337 * 14 13 3 18 18 C 1.50699 * 109.46766 * 294.99385 * 17 14 13 19 19 C 1.38093 * 119.58099 * 124.97888 * 18 17 14 20 20 C 1.38788 * 119.28524 * 180.02562 * 19 18 17 21 21 C 1.38424 * 118.48873 * 0.02562 * 20 19 18 22 22 C 1.38878 * 119.10967 * 0.02562 * 21 20 19 23 23 O 1.35678 * 119.68002 * 180.25831 * 22 21 20 24 24 C 1.42904 * 116.99723 * 179.72258 * 23 22 21 25 25 N 1.31939 * 119.58726 * 305.00363 * 18 17 14 26 26 H 1.08998 * 109.47228 * 66.33926 * 1 2 3 27 27 H 1.08995 * 109.47337 * 186.34146 * 1 2 3 28 28 H 1.09002 * 109.47116 * 306.34262 * 1 2 3 29 29 H 1.08996 * 109.46843 * 240.00111 * 2 1 3 30 30 H 1.09000 * 109.47130 * 120.00379 * 2 1 3 31 31 H 0.96995 * 120.00178 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99866 * 32.05961 * 13 3 2 33 33 H 1.09004 * 109.47448 * 175.37858 * 16 14 13 34 34 H 1.08995 * 109.47631 * 295.38610 * 16 14 13 35 35 H 1.09004 * 109.46700 * 55.38028 * 16 14 13 36 36 H 1.09003 * 109.47131 * 175.00127 * 17 14 13 37 37 H 1.08994 * 109.47476 * 54.99690 * 17 14 13 38 38 H 1.08001 * 120.35658 * 359.97438 * 19 18 17 39 39 H 1.08002 * 120.75511 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.44436 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47099 * 60.00147 * 24 23 22 42 42 H 1.09005 * 109.46803 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47220 * 299.99793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5968 1.9845 0.8353 5 6 3.5405 1.4448 0.1392 6 1 4.1538 1.8866 -0.6322 7 6 4.1306 0.8829 1.2515 8 7 3.3838 0.3445 2.1908 9 14 5.9905 0.8863 1.4245 10 1 6.4851 2.2865 1.4249 11 1 6.3703 0.2263 2.6994 12 1 6.5948 0.1481 0.2863 13 7 1.6643 2.0948 -1.2615 14 6 1.6075 3.5540 -1.1031 15 1 2.3843 3.8748 -0.4090 16 6 0.2365 3.9544 -0.5544 17 6 1.8285 4.2235 -2.4610 18 6 3.2251 3.9292 -2.9446 19 6 3.4095 3.3531 -4.1860 20 6 4.6983 3.0842 -4.6251 21 6 5.7589 3.4056 -3.7956 22 6 5.4990 3.9822 -2.5593 23 8 6.5301 4.3067 -1.7392 24 6 6.1977 4.9025 -0.4836 25 7 4.2564 4.2248 -2.1765 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3634 -1.0213 0.1135 28 1 -0.3633 0.6090 0.8278 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7989 -0.0511 2.9732 32 1 0.7880 1.7342 -1.6080 33 1 0.2221 5.0268 -0.3594 34 1 -0.5336 3.7076 -1.2851 35 1 0.0442 3.4140 0.3726 36 1 1.6985 5.3010 -2.3603 37 1 1.1061 3.8358 -3.1791 38 1 2.5598 3.1136 -4.8082 39 1 4.8698 2.6345 -5.5919 40 1 6.7748 3.2105 -4.1058 41 1 5.5722 4.2178 0.0892 42 1 7.1115 5.1111 0.0729 43 1 5.6558 5.8326 -0.6548 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358301689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:06 Heat of formation + Delta-G solvation = -33.017121 kcal Electronic energy + Delta-G solvation = -22996.524349 eV Core-core repulsion = 19847.881461 eV Total energy + Delta-G solvation = -3148.642888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44061 -39.18246 -38.35543 -35.65004 -33.78249 -33.09470 -32.01585 -30.31619 -28.68993 -27.94800 -27.24952 -24.67975 -23.80645 -23.29378 -21.42917 -21.28220 -19.06305 -18.24898 -17.59118 -16.95594 -16.83379 -16.74306 -16.01300 -15.91192 -15.15444 -15.05919 -14.92549 -14.51681 -14.39242 -14.01430 -13.81703 -13.39464 -13.23984 -13.12633 -13.01549 -12.86096 -12.68929 -12.63280 -12.53291 -12.27463 -11.93953 -11.89869 -11.69058 -11.52138 -11.25295 -10.93824 -10.57238 -10.40080 -10.30196 -9.20078 -8.82781 -8.03901 -6.11283 0.40419 0.57442 1.32733 1.34071 1.42195 2.26793 2.41646 2.99278 3.21262 3.42552 3.77656 3.93585 4.24377 4.32929 4.36067 4.38901 4.41440 4.46225 4.54649 4.57507 4.61960 4.63299 4.74493 4.75116 4.83992 4.86787 4.98035 5.10849 5.13121 5.22712 5.28760 5.35059 5.39340 5.43752 5.48693 5.68262 5.74299 5.82560 5.97908 6.38309 6.44789 6.62513 7.04197 7.17255 7.18209 7.56345 8.98752 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.009027 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.605229 B = 3101.219376 C = 4495.028241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.234 3.766 4 H -0.034 1.034 5 C -0.484 4.484 6 H 0.045 0.955 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.930 3.070 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.676 5.676 14 C 0.097 3.903 15 H 0.046 0.954 16 C -0.169 4.169 17 C -0.052 4.052 18 C 0.183 3.817 19 C -0.205 4.205 20 C -0.039 4.039 21 C -0.218 4.218 22 C 0.291 3.709 23 O -0.328 6.328 24 C 0.045 3.955 25 N -0.547 5.547 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.256 0.744 32 H 0.327 0.673 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.147 0.853 41 H 0.031 0.969 42 H 0.114 0.886 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 7.808 -12.249 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.126 3.874 4 H -0.016 1.016 5 C -0.523 4.523 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.758 3.242 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.064 0.936 16 C -0.228 4.228 17 C -0.090 4.090 18 C 0.046 3.954 19 C -0.224 4.224 20 C -0.064 4.064 21 C -0.239 4.239 22 C 0.112 3.888 23 O -0.236 6.236 24 C -0.050 4.050 25 N -0.271 5.271 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.165 0.835 41 H 0.050 0.950 42 H 0.132 0.868 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.909 8.078 -11.528 14.205 hybrid contribution 0.545 -0.482 0.877 1.139 sum -1.364 7.597 -10.651 13.153 Atomic orbital electron populations 1.21715 0.96097 1.00830 1.00623 1.21575 0.94339 0.99303 1.00729 1.18778 0.93344 0.90176 0.85097 1.01609 1.21392 0.93086 1.34579 1.03275 0.93698 1.25475 1.00710 0.96194 0.96123 1.69977 1.35507 1.40801 1.09947 0.86044 0.82978 0.78399 0.76785 1.19641 1.20973 1.20923 1.60623 1.35783 1.03361 1.30946 1.21323 0.95905 0.88600 0.95580 0.93560 1.22402 0.97805 1.01845 1.00771 1.20656 0.90404 1.00847 0.97072 1.21074 0.93763 0.90945 0.89604 1.22070 0.98993 1.03611 0.97772 1.21723 0.91102 0.93846 0.99730 1.21247 1.02404 1.06731 0.93476 1.20171 0.85974 0.93060 0.89555 1.86131 1.30984 1.76544 1.29923 1.22842 1.02518 0.97331 0.82310 1.66965 0.98966 1.24543 1.36623 0.91927 0.92861 0.94646 0.94954 0.91917 0.93462 0.85441 0.91430 0.90502 0.94934 0.89163 0.87861 0.82178 0.80940 0.83501 0.94973 0.86815 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.62 71.98 0.69 -4.30 16 2 C -0.12 -5.72 5.37 30.60 0.16 -5.56 16 3 C 0.23 11.68 1.84 44.17 0.08 11.76 16 4 H -0.03 -1.88 7.07 -2.39 -0.02 -1.90 16 5 C -0.48 -27.50 8.44 25.60 0.22 -27.29 16 6 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -54.53 11.29 21.45 0.24 -54.29 16 9 Si 0.93 46.71 29.54 68.60 2.03 48.74 16 10 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 12 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 13 N -0.68 -27.07 5.75 -473.33 -2.72 -29.80 16 14 C 0.10 3.45 2.32 44.92 0.10 3.56 16 15 H 0.05 2.09 7.26 -2.39 -0.02 2.08 16 16 C -0.17 -5.00 9.16 71.98 0.66 -4.34 16 17 C -0.05 -1.46 5.29 29.85 0.16 -1.30 16 18 C 0.18 6.05 5.90 42.51 0.25 6.30 16 19 C -0.20 -5.59 9.71 22.37 0.22 -5.37 16 20 C -0.04 -1.01 10.17 22.45 0.23 -0.78 16 21 C -0.22 -6.86 10.04 22.47 0.23 -6.63 16 22 C 0.29 11.12 7.49 84.78 0.63 11.75 16 23 O -0.33 -12.62 10.48 -89.96 -0.94 -13.56 16 24 C 0.05 1.59 10.38 113.37 1.18 2.77 16 25 N -0.55 -21.28 8.64 -296.97 -2.57 -23.84 16 26 H 0.06 1.96 6.68 -2.39 -0.02 1.94 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 3.43 5.94 -2.39 -0.01 3.42 16 31 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.33 11.48 6.37 -89.69 -0.57 10.91 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.03 1.11 7.34 -2.39 -0.02 1.09 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.10 2.29 7.86 -2.39 -0.02 2.27 16 38 H 0.16 3.25 7.94 -2.91 -0.02 3.23 16 39 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 41 H 0.03 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -68.63 349.94 1.71 -66.93 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.41 Total: 24.10 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 5.26 Total: -18.28 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -5.05 Total: -107.93 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.94 Total: -13.56 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -68.63 1.71 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.908 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds