Wall clock time and date at job start Tue Mar 31 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47382 * 2 1 4 4 H 1.09006 * 109.46999 * 305.01340 * 3 2 1 5 5 C 1.50691 * 109.47477 * 185.00992 * 3 2 1 6 6 H 1.08006 * 120.00243 * 244.56814 * 5 3 2 7 7 C 1.37878 * 120.00047 * 64.56813 * 5 3 2 8 8 N 1.31516 * 120.00080 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47279 * 89.99831 * 9 7 5 11 11 H 1.48504 * 109.47008 * 209.99805 * 9 7 5 12 12 H 1.48507 * 109.47219 * 329.99677 * 9 7 5 13 13 N 1.46898 * 109.47157 * 65.00744 * 3 2 1 14 14 C 1.46905 * 111.00454 * 206.55175 * 13 3 2 15 15 H 1.09003 * 109.46799 * 326.37330 * 14 13 3 16 16 C 1.53001 * 109.46882 * 86.36835 * 14 13 3 17 17 C 1.52991 * 109.47488 * 206.37585 * 14 13 3 18 18 C 1.50701 * 109.47389 * 67.34407 * 17 14 13 19 19 C 1.38090 * 119.58616 * 119.81805 * 18 17 14 20 20 C 1.38778 * 119.28929 * 179.97438 * 19 18 17 21 21 C 1.38422 * 118.48694 * 359.97438 * 20 19 18 22 22 C 1.38886 * 119.11125 * 0.02562 * 21 20 19 23 23 O 1.35679 * 119.68089 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99639 * 183.86989 * 23 22 21 25 25 N 1.31939 * 119.58240 * 299.53975 * 18 17 14 26 26 H 1.09008 * 109.47331 * 304.87757 * 1 2 3 27 27 H 1.09002 * 109.47285 * 64.88004 * 1 2 3 28 28 H 1.09001 * 109.47326 * 184.88111 * 1 2 3 29 29 H 1.08999 * 109.47053 * 239.99899 * 2 1 3 30 30 H 1.09004 * 109.46740 * 120.00063 * 2 1 3 31 31 H 0.96999 * 119.99969 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00266 * 82.59936 * 13 3 2 33 33 H 1.09008 * 109.46493 * 175.01451 * 16 14 13 34 34 H 1.09003 * 109.46782 * 55.02350 * 16 14 13 35 35 H 1.08998 * 109.47621 * 295.01545 * 16 14 13 36 36 H 1.09006 * 109.47153 * 187.34622 * 17 14 13 37 37 H 1.09005 * 109.46832 * 307.34167 * 17 14 13 38 38 H 1.07998 * 120.35324 * 359.95294 * 19 18 17 39 39 H 1.07998 * 120.75753 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.44605 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.46736 * 185.21536 * 24 23 22 42 42 H 1.09002 * 109.46802 * 305.21128 * 24 23 22 43 43 H 1.08997 * 109.47340 * 65.20669 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9815 -0.8417 5 6 3.5418 1.4442 -0.1241 6 1 4.1500 1.8218 0.6846 7 6 4.1394 0.9639 -1.2700 8 7 3.3989 0.5037 -2.2546 9 14 6.0011 0.9655 -1.4235 10 1 6.5419 -0.3155 -0.9023 11 1 6.3799 1.1183 -2.8513 12 1 6.5616 2.0951 -0.6391 13 7 1.6516 2.0991 1.2553 14 6 1.5369 3.5526 1.0756 15 1 2.2741 3.8877 0.3459 16 6 0.1322 3.8955 0.5756 17 6 1.7877 4.2532 2.4124 18 6 3.2273 4.0644 2.8162 19 6 4.0372 5.1693 2.9897 20 6 5.3618 4.9884 3.3622 21 6 5.8249 3.6972 3.5478 22 6 4.9538 2.6327 3.3557 23 8 5.3957 1.3623 3.5340 24 6 4.4767 0.3085 3.2391 25 7 3.6964 2.8458 3.0050 26 1 -0.3634 0.5877 0.8431 27 1 -0.3634 0.4363 -0.9305 28 1 -0.3634 -1.0239 0.0874 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8194 0.1654 -3.0606 32 1 2.2999 1.8764 1.9957 33 1 0.0182 4.9785 0.5268 34 1 -0.6082 3.4828 1.2611 35 1 -0.0143 3.4696 -0.4170 36 1 1.5756 5.3175 2.3103 37 1 1.1372 3.8246 3.1748 38 1 3.6442 6.1635 2.8368 39 1 6.0161 5.8356 3.5048 40 1 6.8501 3.5199 3.8374 41 1 4.9221 -0.6485 3.5110 42 1 3.5590 0.4569 3.8081 43 1 4.2482 0.3133 2.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358301692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:10 Heat of formation + Delta-G solvation = -13.147631 kcal Electronic energy + Delta-G solvation = -23288.087399 eV Core-core repulsion = 20140.306117 eV Total energy + Delta-G solvation = -3147.781282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40348 -37.81345 -36.60611 -33.91709 -32.12871 -31.56000 -30.71157 -28.97862 -27.31513 -26.07576 -25.72669 -22.81069 -22.57952 -22.01892 -19.77421 -19.31111 -17.76789 -16.58886 -16.44766 -15.77097 -15.51103 -14.92654 -14.52147 -14.24743 -13.99094 -13.56998 -13.20593 -12.94535 -12.72725 -12.68727 -12.08115 -11.92640 -11.66696 -11.41845 -11.38779 -11.17259 -11.10932 -11.02062 -10.79840 -10.66688 -10.56970 -10.27013 -10.02925 -9.57951 -9.51224 -9.33223 -9.12584 -8.87425 -8.29747 -8.08081 -7.01303 -5.92280 -4.02446 1.43039 1.58132 3.28444 3.35842 3.40474 3.48025 4.06382 4.44915 4.46522 4.91206 5.23950 5.32621 5.36750 5.41632 5.49314 5.65894 5.73837 5.76505 5.86416 5.90989 6.10505 6.20117 6.23262 6.29948 6.34584 6.42496 6.43386 6.57002 6.57344 6.70780 6.77407 6.82546 6.96198 7.22838 7.25075 7.56263 7.59711 7.71985 7.87908 8.14837 8.23272 8.37816 8.48369 9.00466 9.20279 9.64673 11.08505 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.009044 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.482226 B = 3095.199295 C = 4142.065687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.693 5.693 14 C 0.096 3.904 15 H 0.044 0.956 16 C -0.134 4.134 17 C -0.076 4.076 18 C 0.182 3.818 19 C -0.218 4.218 20 C -0.041 4.041 21 C -0.208 4.208 22 C 0.335 3.665 23 O -0.312 6.312 24 C 0.027 3.973 25 N -0.518 5.518 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.352 0.648 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 6.997 10.509 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.573 4.573 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.330 5.330 14 C -0.015 4.015 15 H 0.062 0.938 16 C -0.192 4.192 17 C -0.114 4.114 18 C 0.045 3.955 19 C -0.238 4.238 20 C -0.067 4.067 21 C -0.228 4.228 22 C 0.156 3.844 23 O -0.218 6.218 24 C -0.068 4.068 25 N -0.242 5.242 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.177 0.823 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.245 5.953 10.228 11.900 hybrid contribution 2.545 0.752 -0.368 2.679 sum 1.300 6.706 9.860 11.995 Atomic orbital electron populations 1.21712 0.99044 0.98321 1.00438 1.21418 0.92142 0.99599 1.00679 1.19091 0.92503 0.90853 0.86778 0.95192 1.21959 0.92975 1.40917 1.01448 0.92426 1.24917 0.97137 0.95425 0.95979 1.69913 1.34471 1.41980 1.06139 0.86857 0.87180 0.78446 0.77153 1.20645 1.21307 1.20214 1.61088 1.56092 1.04992 1.10868 1.21193 0.96104 0.91080 0.93156 0.93815 1.21784 0.97079 0.98834 1.01511 1.20910 0.89897 1.01077 0.99498 1.20994 0.96529 0.86982 0.91017 1.21719 0.94939 0.99843 1.07298 1.21265 0.95280 0.96127 0.94013 1.20956 1.00791 0.91256 1.09825 1.19801 0.88653 0.85611 0.90356 1.86162 1.41691 1.12081 1.81899 1.23139 0.92700 0.86701 1.04272 1.66875 1.14062 1.25552 1.17720 0.92932 0.94621 0.95895 0.90328 0.95391 0.93132 0.82339 0.94003 0.92715 0.92662 0.90364 0.89628 0.85049 0.84724 0.84761 0.89367 0.92217 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.86 37.15 0.37 -2.49 16 2 C -0.10 -2.38 5.48 -26.74 -0.15 -2.53 16 3 C 0.22 5.31 1.69 -68.87 -0.12 5.20 16 4 H 0.03 0.83 7.26 -51.93 -0.38 0.45 16 5 C -0.53 -14.24 7.58 -34.44 -0.26 -14.51 16 6 H 0.06 1.55 6.16 -52.48 -0.32 1.23 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.28 11.65 55.43 0.65 -24.64 16 9 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 N -0.69 -14.62 5.43 -100.96 -0.55 -15.17 16 14 C 0.10 1.79 2.41 -67.71 -0.16 1.63 16 15 H 0.04 0.96 7.67 -51.93 -0.40 0.56 16 16 C -0.13 -2.20 9.39 37.16 0.35 -1.85 16 17 C -0.08 -1.15 5.22 -27.89 -0.15 -1.30 16 18 C 0.18 3.02 6.11 -82.60 -0.50 2.52 16 19 C -0.22 -3.07 9.71 -39.44 -0.38 -3.45 16 20 C -0.04 -0.55 10.17 -39.31 -0.40 -0.95 16 21 C -0.21 -3.20 10.04 -39.27 -0.39 -3.60 16 22 C 0.33 6.09 7.48 -17.12 -0.13 5.97 16 23 O -0.31 -5.68 10.48 -18.74 -0.20 -5.88 16 24 C 0.03 0.46 10.49 101.05 1.06 1.52 16 25 N -0.52 -9.60 5.59 -9.55 -0.05 -9.65 16 26 H 0.05 1.05 7.62 -51.92 -0.40 0.65 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 2.10 6.34 -51.93 -0.33 1.77 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.35 7.47 5.05 -39.29 -0.20 7.27 16 33 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 1.00 7.61 -51.93 -0.40 0.61 16 36 H 0.08 0.96 7.85 -51.93 -0.41 0.56 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.13 1.47 7.94 -52.49 -0.42 1.05 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 43 H 0.09 1.78 6.54 -51.93 -0.34 1.44 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -29.43 344.28 -7.88 -37.30 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.93 Total: 8.24 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.96 Total: -12.09 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.04 Total: -49.46 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.20 Total: -5.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.43 -7.88 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds