Wall clock time and date at job start Tue Mar 31 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47382 * 2 1 4 4 H 1.09006 * 109.46999 * 305.01340 * 3 2 1 5 5 C 1.50691 * 109.47477 * 185.00992 * 3 2 1 6 6 H 1.08006 * 120.00243 * 244.56814 * 5 3 2 7 7 C 1.37878 * 120.00047 * 64.56813 * 5 3 2 8 8 N 1.31516 * 120.00080 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47279 * 89.99831 * 9 7 5 11 11 H 1.48504 * 109.47008 * 209.99805 * 9 7 5 12 12 H 1.48507 * 109.47219 * 329.99677 * 9 7 5 13 13 N 1.46898 * 109.47157 * 65.00744 * 3 2 1 14 14 C 1.46905 * 111.00454 * 206.55175 * 13 3 2 15 15 H 1.09003 * 109.46799 * 326.37330 * 14 13 3 16 16 C 1.53001 * 109.46882 * 86.36835 * 14 13 3 17 17 C 1.52991 * 109.47488 * 206.37585 * 14 13 3 18 18 C 1.50701 * 109.47389 * 67.34407 * 17 14 13 19 19 C 1.38090 * 119.58616 * 119.81805 * 18 17 14 20 20 C 1.38778 * 119.28929 * 179.97438 * 19 18 17 21 21 C 1.38422 * 118.48694 * 359.97438 * 20 19 18 22 22 C 1.38886 * 119.11125 * 0.02562 * 21 20 19 23 23 O 1.35679 * 119.68089 * 179.97438 * 22 21 20 24 24 C 1.42901 * 116.99639 * 183.86989 * 23 22 21 25 25 N 1.31939 * 119.58240 * 299.53975 * 18 17 14 26 26 H 1.09008 * 109.47331 * 304.87757 * 1 2 3 27 27 H 1.09002 * 109.47285 * 64.88004 * 1 2 3 28 28 H 1.09001 * 109.47326 * 184.88111 * 1 2 3 29 29 H 1.08999 * 109.47053 * 239.99899 * 2 1 3 30 30 H 1.09004 * 109.46740 * 120.00063 * 2 1 3 31 31 H 0.96999 * 119.99969 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00266 * 82.59936 * 13 3 2 33 33 H 1.09008 * 109.46493 * 175.01451 * 16 14 13 34 34 H 1.09003 * 109.46782 * 55.02350 * 16 14 13 35 35 H 1.08998 * 109.47621 * 295.01545 * 16 14 13 36 36 H 1.09006 * 109.47153 * 187.34622 * 17 14 13 37 37 H 1.09005 * 109.46832 * 307.34167 * 17 14 13 38 38 H 1.07998 * 120.35324 * 359.95294 * 19 18 17 39 39 H 1.07998 * 120.75753 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.44605 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.46736 * 185.21536 * 24 23 22 42 42 H 1.09002 * 109.46802 * 305.21128 * 24 23 22 43 43 H 1.08997 * 109.47340 * 65.20669 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9815 -0.8417 5 6 3.5418 1.4442 -0.1241 6 1 4.1500 1.8218 0.6846 7 6 4.1394 0.9639 -1.2700 8 7 3.3989 0.5037 -2.2546 9 14 6.0011 0.9655 -1.4235 10 1 6.5419 -0.3155 -0.9023 11 1 6.3799 1.1183 -2.8513 12 1 6.5616 2.0951 -0.6391 13 7 1.6516 2.0991 1.2553 14 6 1.5369 3.5526 1.0756 15 1 2.2741 3.8877 0.3459 16 6 0.1322 3.8955 0.5756 17 6 1.7877 4.2532 2.4124 18 6 3.2273 4.0644 2.8162 19 6 4.0372 5.1693 2.9897 20 6 5.3618 4.9884 3.3622 21 6 5.8249 3.6972 3.5478 22 6 4.9538 2.6327 3.3557 23 8 5.3957 1.3623 3.5340 24 6 4.4767 0.3085 3.2391 25 7 3.6964 2.8458 3.0050 26 1 -0.3634 0.5877 0.8431 27 1 -0.3634 0.4363 -0.9305 28 1 -0.3634 -1.0239 0.0874 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8194 0.1654 -3.0606 32 1 2.2999 1.8764 1.9957 33 1 0.0182 4.9785 0.5268 34 1 -0.6082 3.4828 1.2611 35 1 -0.0143 3.4696 -0.4170 36 1 1.5756 5.3175 2.3103 37 1 1.1372 3.8246 3.1748 38 1 3.6442 6.1635 2.8368 39 1 6.0161 5.8356 3.5048 40 1 6.8501 3.5199 3.8374 41 1 4.9221 -0.6485 3.5110 42 1 3.5590 0.4569 3.8081 43 1 4.2482 0.3133 2.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358301692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:10 Heat of formation + Delta-G solvation = -31.526828 kcal Electronic energy + Delta-G solvation = -23288.884381 eV Core-core repulsion = 20140.306117 eV Total energy + Delta-G solvation = -3148.578264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62805 -39.15199 -38.21286 -35.62075 -33.66559 -33.19887 -32.08360 -30.60357 -28.63093 -27.74530 -27.27770 -24.64106 -23.82690 -23.30806 -21.31596 -21.14058 -19.11483 -18.55620 -17.70309 -16.97972 -16.86638 -16.70791 -16.26586 -15.58673 -15.45488 -15.10329 -14.74788 -14.52651 -14.20584 -14.09454 -13.52537 -13.29542 -13.22631 -13.06081 -12.99241 -12.82858 -12.73460 -12.52212 -12.41788 -12.35795 -12.16007 -11.90192 -11.66299 -11.47504 -11.23699 -10.89407 -10.68880 -10.49394 -10.30680 -9.31477 -8.82357 -8.01373 -6.19415 0.24125 0.43872 1.28085 1.31105 1.38606 2.24092 2.37142 2.85409 3.17670 3.25478 3.81050 3.95734 4.15195 4.24321 4.33585 4.37085 4.46692 4.52294 4.56314 4.61957 4.65839 4.79573 4.83211 4.90618 4.93089 4.95070 5.02562 5.12045 5.16033 5.26773 5.29721 5.34920 5.44786 5.52519 5.62168 5.64399 5.71555 5.84236 6.15843 6.29874 6.34498 6.56873 7.00826 7.03834 7.36863 7.51813 8.94900 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.009044 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.482226 B = 3095.199295 C = 4142.065687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 C 0.228 3.772 4 H -0.006 1.006 5 C -0.532 4.532 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.928 3.072 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.687 5.687 14 C 0.093 3.907 15 H 0.005 0.995 16 C -0.126 4.126 17 C -0.066 4.066 18 C 0.150 3.850 19 C -0.209 4.209 20 C -0.036 4.036 21 C -0.214 4.214 22 C 0.297 3.703 23 O -0.323 6.323 24 C 0.035 3.965 25 N -0.544 5.544 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.258 0.742 32 H 0.352 0.648 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 8.970 12.044 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.135 4.135 3 C 0.118 3.882 4 H 0.012 0.988 5 C -0.572 4.572 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.553 5.553 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.325 5.325 14 C -0.018 4.018 15 H 0.023 0.977 16 C -0.184 4.184 17 C -0.104 4.104 18 C 0.014 3.986 19 C -0.229 4.229 20 C -0.061 4.061 21 C -0.234 4.234 22 C 0.119 3.881 23 O -0.230 6.230 24 C -0.060 4.060 25 N -0.268 5.268 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.177 0.823 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.185 0.815 39 H 0.195 0.805 40 H 0.169 0.831 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.065 7.938 11.773 14.239 hybrid contribution 2.488 0.222 -0.806 2.625 sum 1.423 8.160 10.967 13.744 Atomic orbital electron populations 1.21560 0.96381 0.99825 1.00421 1.21280 0.94497 0.98743 0.98950 1.18809 0.91147 0.91065 0.87138 0.98815 1.22210 0.94231 1.39750 1.00989 0.92931 1.25520 1.00482 0.95675 0.96033 1.70027 1.35689 1.43087 1.06510 0.86026 0.83237 0.78233 0.76967 1.20139 1.20928 1.20684 1.61071 1.55534 1.06819 1.09055 1.21277 0.96359 0.89622 0.94588 0.97682 1.21712 0.95758 1.00922 1.00000 1.20883 0.89592 1.02808 0.97072 1.21400 0.97580 0.87351 0.92277 1.22156 0.94954 1.00609 1.05180 1.21796 0.95617 0.96483 0.92193 1.21349 1.01328 0.91524 1.09227 1.20242 0.89468 0.86052 0.92383 1.86137 1.42022 1.12546 1.82335 1.23029 0.93341 0.87967 1.01645 1.66744 1.14658 1.27023 1.18398 0.92042 0.95276 0.93745 0.93431 0.95599 0.93281 0.82284 0.90708 0.91642 0.95348 0.86643 0.89078 0.81536 0.80455 0.83063 0.86635 0.92046 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.86 71.98 0.71 -4.44 16 2 C -0.10 -4.72 5.48 30.59 0.17 -4.55 16 3 C 0.23 11.59 1.69 44.16 0.07 11.67 16 4 H -0.01 -0.35 7.26 -2.38 -0.02 -0.37 16 5 C -0.53 -29.36 7.58 25.60 0.19 -29.17 16 6 H 0.05 2.93 6.16 -2.91 -0.02 2.91 16 7 C 0.02 1.25 5.30 84.65 0.45 1.69 16 8 N -0.91 -53.78 11.65 21.45 0.25 -53.53 16 9 Si 0.93 45.57 29.54 68.60 2.03 47.60 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 13 N -0.69 -29.43 5.43 -473.33 -2.57 -32.01 16 14 C 0.09 3.43 2.41 44.91 0.11 3.54 16 15 H 0.01 0.23 7.67 -2.39 -0.02 0.21 16 16 C -0.13 -3.99 9.39 71.98 0.68 -3.31 16 17 C -0.07 -1.86 5.22 29.85 0.16 -1.70 16 18 C 0.15 4.75 6.11 42.51 0.26 5.01 16 19 C -0.21 -5.20 9.71 22.36 0.22 -4.98 16 20 C -0.04 -0.83 10.17 22.44 0.23 -0.61 16 21 C -0.21 -6.21 10.04 22.47 0.23 -5.99 16 22 C 0.30 10.74 7.48 84.78 0.63 11.37 16 23 O -0.32 -11.89 10.48 -89.97 -0.94 -12.83 16 24 C 0.04 1.23 10.49 113.37 1.19 2.42 16 25 N -0.54 -20.06 5.59 -296.97 -1.66 -21.72 16 26 H 0.06 2.41 7.62 -2.38 -0.02 2.39 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 2.63 6.34 -2.39 -0.02 2.62 16 30 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.35 15.23 5.05 -89.69 -0.45 14.77 16 33 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.03 7.61 -2.39 -0.02 1.01 16 36 H 0.12 2.37 7.85 -2.38 -0.02 2.35 16 37 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.17 2.88 7.94 -2.91 -0.02 2.85 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 41 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 43 H 0.05 2.03 6.54 -2.39 -0.02 2.01 16 Total: -1.00 -66.84 344.28 2.92 -63.91 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.53 Total: 27.62 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.29 Total: -19.05 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.98 Total: -107.25 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.94 Total: -12.83 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.84 2.92 -63.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.386 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds