Wall clock time and date at job start Tue Mar 31 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 H 1.09002 * 109.46859 * 306.21110 * 3 2 1 5 5 C 1.50703 * 109.46678 * 186.21987 * 3 2 1 6 6 H 1.08003 * 119.99915 * 239.99417 * 5 3 2 7 7 C 1.37876 * 120.00155 * 59.99494 * 5 3 2 8 8 N 1.31513 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00024 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46983 * 60.00070 * 9 7 5 11 11 H 1.48493 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46877 * 300.00382 * 9 7 5 13 13 N 1.46897 * 109.47551 * 66.21665 * 3 2 1 14 14 C 1.46896 * 111.00037 * 265.15123 * 13 3 2 15 15 H 1.08999 * 109.46975 * 41.52293 * 14 13 3 16 16 C 1.53001 * 109.47273 * 281.52149 * 14 13 3 17 17 C 1.52995 * 109.47216 * 161.51915 * 14 13 3 18 18 C 1.50700 * 109.47143 * 294.73146 * 17 14 13 19 19 C 1.38093 * 119.58237 * 275.63596 * 18 17 14 20 20 C 1.38785 * 119.28750 * 179.79307 * 19 18 17 21 21 C 1.38416 * 118.48547 * 0.47693 * 20 19 18 22 22 C 1.38870 * 119.11435 * 359.74775 * 21 20 19 23 23 O 1.35677 * 119.68702 * 180.02562 * 22 21 20 24 24 C 1.42901 * 117.00207 * 185.09704 * 23 22 21 25 25 N 1.31930 * 119.58689 * 95.91442 * 18 17 14 26 26 H 1.08997 * 109.47033 * 180.42676 * 1 2 3 27 27 H 1.09001 * 109.47602 * 300.43179 * 1 2 3 28 28 H 1.09004 * 109.47049 * 60.42843 * 1 2 3 29 29 H 1.08997 * 109.47219 * 239.99696 * 2 1 3 30 30 H 1.09001 * 109.47131 * 119.99635 * 2 1 3 31 31 H 0.96998 * 120.00140 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99735 * 29.10923 * 13 3 2 33 33 H 1.09002 * 109.47258 * 179.97438 * 16 14 13 34 34 H 1.09000 * 109.46794 * 299.99694 * 16 14 13 35 35 H 1.08999 * 109.47076 * 59.99893 * 16 14 13 36 36 H 1.08998 * 109.47019 * 54.72636 * 17 14 13 37 37 H 1.08999 * 109.47350 * 174.73118 * 17 14 13 38 38 H 1.08004 * 120.35580 * 0.02562 * 19 18 17 39 39 H 1.08001 * 120.75391 * 180.22173 * 20 19 18 40 40 H 1.08001 * 120.44639 * 179.76911 * 21 20 19 41 41 H 1.08996 * 109.47143 * 64.84681 * 24 23 22 42 42 H 1.09005 * 109.47183 * 184.84559 * 24 23 22 43 43 H 1.09003 * 109.47341 * 304.84521 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5886 1.9874 -0.8292 5 6 3.5391 1.4453 -0.1539 6 1 4.1599 1.8845 0.6130 7 6 4.1181 0.8872 -1.2738 8 7 3.3623 0.3520 -2.2075 9 14 5.9764 0.8913 -1.4650 10 1 6.5918 0.1493 -0.3353 11 1 6.3436 0.2367 -2.7463 12 1 6.4708 2.2916 -1.4653 13 7 1.6766 2.0905 1.2673 14 6 0.4185 2.8373 1.1350 15 1 -0.2907 2.2532 0.5486 16 6 0.6875 4.1690 0.4314 17 6 -0.1652 3.1031 2.5240 18 6 -0.5503 1.7951 3.1659 19 6 -1.7800 1.2336 2.8843 20 6 -2.1266 0.0267 3.4755 21 6 -1.2238 -0.5686 4.3394 22 6 -0.0068 0.0554 4.5801 23 8 0.8871 -0.5180 5.4245 24 6 2.0716 0.2255 5.7181 25 7 0.2895 1.2037 3.9939 26 1 -0.3633 -1.0276 0.0077 27 1 -0.3634 0.5205 0.8861 28 1 -0.3633 0.5072 -0.8938 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7697 -0.0403 -2.9956 32 1 1.6196 1.4155 2.0151 33 1 -0.2461 4.7229 0.3329 34 1 1.3967 4.7530 1.0179 35 1 1.1034 3.9796 -0.5582 36 1 0.5798 3.6052 3.1412 37 1 -1.0476 3.7364 2.4322 38 1 -2.4633 1.7264 2.2085 39 1 -3.0808 -0.4354 3.2692 40 1 -1.4624 -1.5060 4.8197 41 1 1.8056 1.1348 6.2570 42 1 2.7374 -0.3798 6.3333 43 1 2.5754 0.4886 4.7879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358301696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:17 Heat of formation + Delta-G solvation = -9.910526 kcal Electronic energy + Delta-G solvation = -22817.457599 eV Core-core repulsion = 19669.816688 eV Total energy + Delta-G solvation = -3147.640911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.59935 -38.19057 -36.91150 -33.94592 -32.35434 -31.58694 -30.80670 -28.88219 -27.57242 -26.38412 -25.96655 -22.94881 -22.80538 -22.17753 -19.81476 -19.58794 -17.95762 -16.74035 -16.24309 -15.92028 -15.86231 -15.23125 -14.67500 -14.31685 -14.21239 -13.83134 -13.29272 -13.21705 -12.86209 -12.75286 -12.27501 -12.05680 -11.77459 -11.60819 -11.50989 -11.34688 -11.13781 -11.05226 -10.85612 -10.73863 -10.65470 -10.34473 -10.00023 -9.80034 -9.66076 -9.62041 -9.40406 -8.93450 -8.28789 -8.23983 -7.04014 -5.90946 -3.93475 1.24107 1.39650 3.21151 3.38215 3.41775 3.45577 3.85847 4.28928 4.49679 4.81823 5.09822 5.19440 5.27724 5.30704 5.38698 5.40490 5.48404 5.51632 5.59026 5.78205 5.84386 5.94952 6.07306 6.11279 6.18110 6.20423 6.23869 6.30986 6.41440 6.45861 6.53926 6.68342 6.87815 6.92448 7.03891 7.31047 7.34670 7.50185 7.83762 7.98535 8.04535 8.40408 8.71742 8.74409 9.14423 9.71208 11.15149 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.005696 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.689750 B = 4914.759344 C = 5415.817488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.146 4.146 3 C 0.219 3.781 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.084 3.916 15 H 0.042 0.958 16 C -0.135 4.135 17 C -0.077 4.077 18 C 0.182 3.818 19 C -0.210 4.210 20 C -0.040 4.040 21 C -0.203 4.203 22 C 0.324 3.676 23 O -0.311 6.311 24 C 0.038 3.962 25 N -0.527 5.527 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 1.260 11.689 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C 0.111 3.889 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.027 4.027 15 H 0.060 0.940 16 C -0.193 4.193 17 C -0.115 4.115 18 C 0.045 3.955 19 C -0.230 4.230 20 C -0.065 4.065 21 C -0.223 4.223 22 C 0.145 3.855 23 O -0.218 6.218 24 C -0.057 4.057 25 N -0.251 5.251 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.666 1.854 11.734 15.315 hybrid contribution -0.267 -1.175 -0.441 1.283 sum -9.933 0.678 11.293 15.055 Atomic orbital electron populations 1.22030 0.99672 0.99198 1.00099 1.22232 0.91543 1.02344 1.02463 1.19178 0.95324 0.88401 0.85997 0.95001 1.21196 0.91444 1.35876 1.04267 0.92107 1.24950 0.97934 0.95739 0.95996 1.69863 1.34600 1.39905 1.09504 0.86617 0.85952 0.78133 0.76987 1.20491 1.21558 1.20360 1.60851 1.28834 1.32315 1.09090 1.21552 0.92510 0.96191 0.92444 0.94010 1.21766 0.99994 0.96102 1.01468 1.20895 1.01619 0.91766 0.97203 1.20997 0.88821 0.95506 0.90178 1.21770 0.98799 0.98125 1.04295 1.21317 0.98568 0.93830 0.92823 1.20974 0.93291 1.03293 1.04762 1.19820 0.88144 0.88971 0.88565 1.86204 1.30890 1.44872 1.59876 1.22886 0.84587 0.96263 1.01966 1.67192 1.35182 1.10419 1.12295 0.95111 0.93901 0.93797 0.88344 0.95375 0.93153 0.85076 0.93902 0.92361 0.91897 0.89260 0.90090 0.84833 0.84480 0.84578 0.92730 0.88942 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.68 37.16 0.32 -2.80 16 2 C -0.15 -3.57 5.16 -26.73 -0.14 -3.71 16 3 C 0.22 5.51 1.99 -68.86 -0.14 5.38 16 4 H 0.03 0.88 6.69 -51.93 -0.35 0.53 16 5 C -0.49 -13.75 8.84 -34.44 -0.30 -14.05 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.91 11.29 55.43 0.63 -25.29 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -14.70 5.91 -100.96 -0.60 -15.29 16 14 C 0.08 1.49 1.87 -67.72 -0.13 1.36 16 15 H 0.04 0.77 5.36 -51.93 -0.28 0.49 16 16 C -0.14 -2.28 9.32 37.16 0.35 -1.93 16 17 C -0.08 -1.12 5.11 -27.89 -0.14 -1.26 16 18 C 0.18 2.74 4.60 -82.60 -0.38 2.36 16 19 C -0.21 -2.72 8.56 -39.43 -0.34 -3.06 16 20 C -0.04 -0.47 10.17 -39.31 -0.40 -0.87 16 21 C -0.20 -2.67 10.04 -39.28 -0.39 -3.06 16 22 C 0.32 5.01 7.48 -17.12 -0.13 4.88 16 23 O -0.31 -4.63 10.48 -18.73 -0.20 -4.83 16 24 C 0.04 0.48 10.49 101.05 1.06 1.54 16 25 N -0.53 -8.58 8.05 -9.55 -0.08 -8.66 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.80 3.90 -51.93 -0.20 0.60 16 28 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 29 H 0.10 2.70 5.93 -51.93 -0.31 2.39 16 30 H 0.03 0.70 7.99 -51.93 -0.42 0.28 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.33 7.21 6.23 -39.29 -0.24 6.96 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.21 7.10 -51.93 -0.37 0.84 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -30.23 340.66 -7.75 -37.98 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.77 Total: 7.90 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.85 Total: -13.81 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.05 Total: -49.24 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.23 -7.75 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.068 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds