Wall clock time and date at job start Tue Mar 31 2020 00:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 H 1.09002 * 109.46859 * 306.21110 * 3 2 1 5 5 C 1.50703 * 109.46678 * 186.21987 * 3 2 1 6 6 H 1.08003 * 119.99915 * 239.99417 * 5 3 2 7 7 C 1.37876 * 120.00155 * 59.99494 * 5 3 2 8 8 N 1.31513 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00024 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46983 * 60.00070 * 9 7 5 11 11 H 1.48493 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46877 * 300.00382 * 9 7 5 13 13 N 1.46897 * 109.47551 * 66.21665 * 3 2 1 14 14 C 1.46896 * 111.00037 * 265.15123 * 13 3 2 15 15 H 1.08999 * 109.46975 * 41.52293 * 14 13 3 16 16 C 1.53001 * 109.47273 * 281.52149 * 14 13 3 17 17 C 1.52995 * 109.47216 * 161.51915 * 14 13 3 18 18 C 1.50700 * 109.47143 * 294.73146 * 17 14 13 19 19 C 1.38093 * 119.58237 * 275.63596 * 18 17 14 20 20 C 1.38785 * 119.28750 * 179.79307 * 19 18 17 21 21 C 1.38416 * 118.48547 * 0.47693 * 20 19 18 22 22 C 1.38870 * 119.11435 * 359.74775 * 21 20 19 23 23 O 1.35677 * 119.68702 * 180.02562 * 22 21 20 24 24 C 1.42901 * 117.00207 * 185.09704 * 23 22 21 25 25 N 1.31930 * 119.58689 * 95.91442 * 18 17 14 26 26 H 1.08997 * 109.47033 * 180.42676 * 1 2 3 27 27 H 1.09001 * 109.47602 * 300.43179 * 1 2 3 28 28 H 1.09004 * 109.47049 * 60.42843 * 1 2 3 29 29 H 1.08997 * 109.47219 * 239.99696 * 2 1 3 30 30 H 1.09001 * 109.47131 * 119.99635 * 2 1 3 31 31 H 0.96998 * 120.00140 * 179.97438 * 8 7 5 32 32 H 1.00902 * 110.99735 * 29.10923 * 13 3 2 33 33 H 1.09002 * 109.47258 * 179.97438 * 16 14 13 34 34 H 1.09000 * 109.46794 * 299.99694 * 16 14 13 35 35 H 1.08999 * 109.47076 * 59.99893 * 16 14 13 36 36 H 1.08998 * 109.47019 * 54.72636 * 17 14 13 37 37 H 1.08999 * 109.47350 * 174.73118 * 17 14 13 38 38 H 1.08004 * 120.35580 * 0.02562 * 19 18 17 39 39 H 1.08001 * 120.75391 * 180.22173 * 20 19 18 40 40 H 1.08001 * 120.44639 * 179.76911 * 21 20 19 41 41 H 1.08996 * 109.47143 * 64.84681 * 24 23 22 42 42 H 1.09005 * 109.47183 * 184.84559 * 24 23 22 43 43 H 1.09003 * 109.47341 * 304.84521 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5886 1.9874 -0.8292 5 6 3.5391 1.4453 -0.1539 6 1 4.1599 1.8845 0.6130 7 6 4.1181 0.8872 -1.2738 8 7 3.3623 0.3520 -2.2075 9 14 5.9764 0.8913 -1.4650 10 1 6.5918 0.1493 -0.3353 11 1 6.3436 0.2367 -2.7463 12 1 6.4708 2.2916 -1.4653 13 7 1.6766 2.0905 1.2673 14 6 0.4185 2.8373 1.1350 15 1 -0.2907 2.2532 0.5486 16 6 0.6875 4.1690 0.4314 17 6 -0.1652 3.1031 2.5240 18 6 -0.5503 1.7951 3.1659 19 6 -1.7800 1.2336 2.8843 20 6 -2.1266 0.0267 3.4755 21 6 -1.2238 -0.5686 4.3394 22 6 -0.0068 0.0554 4.5801 23 8 0.8871 -0.5180 5.4245 24 6 2.0716 0.2255 5.7181 25 7 0.2895 1.2037 3.9939 26 1 -0.3633 -1.0276 0.0077 27 1 -0.3634 0.5205 0.8861 28 1 -0.3633 0.5072 -0.8938 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7697 -0.0403 -2.9956 32 1 1.6196 1.4155 2.0151 33 1 -0.2461 4.7229 0.3329 34 1 1.3967 4.7530 1.0179 35 1 1.1034 3.9796 -0.5582 36 1 0.5798 3.6052 3.1412 37 1 -1.0476 3.7364 2.4322 38 1 -2.4633 1.7264 2.2085 39 1 -3.0808 -0.4354 3.2692 40 1 -1.4624 -1.5060 4.8197 41 1 1.8056 1.1348 6.2570 42 1 2.7374 -0.3798 6.3333 43 1 2.5754 0.4886 4.7879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358301696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:16 Heat of formation + Delta-G solvation = -30.246940 kcal Electronic energy + Delta-G solvation = -22818.339452 eV Core-core repulsion = 19669.816688 eV Total energy + Delta-G solvation = -3148.522764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65798 -39.42869 -38.38367 -35.61446 -33.75334 -33.19485 -32.09390 -30.48585 -28.69769 -28.15559 -27.25787 -24.78808 -23.88963 -23.33284 -21.58876 -21.15800 -19.04400 -18.36550 -17.77349 -17.04659 -16.89626 -16.81648 -16.53939 -15.56799 -15.50221 -15.19914 -14.83425 -14.70311 -14.21088 -14.14158 -13.60797 -13.42713 -13.18359 -13.09898 -12.94720 -12.80780 -12.66816 -12.59062 -12.47927 -12.31383 -12.13542 -11.91631 -11.83243 -11.69470 -11.42524 -10.98620 -10.74008 -10.48194 -10.41020 -9.33110 -8.79678 -8.06372 -6.16926 0.20234 0.40527 1.40465 1.42030 1.49806 2.21090 2.44094 2.80550 3.19421 3.22878 3.70412 3.92458 4.15936 4.17309 4.23540 4.33882 4.38662 4.43353 4.45585 4.49536 4.52363 4.56591 4.67648 4.74136 4.81098 4.88928 5.00235 5.01539 5.05022 5.11377 5.17684 5.22972 5.29223 5.42567 5.51011 5.56184 5.61199 5.74000 5.88342 6.28797 6.36620 6.76326 6.94325 6.98753 7.01255 7.52501 8.97293 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.005696 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.689750 B = 4914.759344 C = 5415.817488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.138 4.138 3 C 0.229 3.771 4 H 0.006 0.994 5 C -0.513 4.513 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.082 3.918 15 H 0.040 0.960 16 C -0.131 4.131 17 C -0.066 4.066 18 C 0.156 3.844 19 C -0.208 4.208 20 C -0.035 4.035 21 C -0.205 4.205 22 C 0.295 3.705 23 O -0.323 6.323 24 C 0.040 3.960 25 N -0.552 5.552 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 1.287 12.339 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.120 3.880 4 H 0.024 0.976 5 C -0.552 4.552 6 H 0.065 0.935 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.318 5.318 14 C -0.028 4.028 15 H 0.058 0.942 16 C -0.189 4.189 17 C -0.104 4.104 18 C 0.020 3.980 19 C -0.228 4.228 20 C -0.060 4.060 21 C -0.225 4.225 22 C 0.117 3.883 23 O -0.230 6.230 24 C -0.055 4.055 25 N -0.277 5.277 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.136 0.864 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.444 1.895 12.391 16.973 hybrid contribution 0.248 -1.174 -0.615 1.348 sum -11.196 0.721 11.776 16.265 Atomic orbital electron populations 1.21886 0.96384 1.00533 1.00935 1.22030 0.94491 1.01200 1.00033 1.18873 0.93681 0.88696 0.86730 0.97642 1.21511 0.93244 1.36195 1.04253 0.93514 1.25662 1.02151 0.95327 0.95687 1.69986 1.36141 1.40167 1.09731 0.85675 0.80929 0.78259 0.77103 1.20152 1.20799 1.19877 1.60742 1.31811 1.31913 1.07286 1.21645 0.90720 0.95718 0.94755 0.94215 1.21734 1.01734 0.96121 0.99281 1.20808 1.02570 0.92424 0.94622 1.21168 0.89901 0.95950 0.90988 1.22108 0.98160 0.98420 1.04092 1.21792 0.99590 0.93205 0.91380 1.21355 0.92558 1.03871 1.04715 1.20221 0.89236 0.89472 0.89417 1.86183 1.31341 1.45405 1.60093 1.22948 0.84363 0.97133 1.01051 1.67105 1.36234 1.11187 1.13126 0.93521 0.92022 0.93872 0.91511 0.96844 0.93126 0.85239 0.89970 0.92720 0.95197 0.90389 0.86445 0.82292 0.80640 0.82652 0.92288 0.86194 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.68 71.98 0.62 -4.98 16 2 C -0.14 -6.87 5.16 30.60 0.16 -6.71 16 3 C 0.23 11.87 1.99 44.17 0.09 11.95 16 4 H 0.01 0.32 6.69 -2.39 -0.02 0.31 16 5 C -0.51 -29.77 8.84 25.60 0.23 -29.54 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -54.15 11.29 21.45 0.24 -53.91 16 9 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.69 -30.20 5.91 -473.32 -2.80 -32.99 16 14 C 0.08 2.83 1.87 44.91 0.08 2.91 16 15 H 0.04 1.40 5.36 -2.39 -0.01 1.39 16 16 C -0.13 -4.30 9.32 71.98 0.67 -3.63 16 17 C -0.07 -1.81 5.11 29.85 0.15 -1.66 16 18 C 0.16 4.43 4.60 42.51 0.20 4.63 16 19 C -0.21 -4.70 8.56 22.37 0.19 -4.51 16 20 C -0.03 -0.69 10.17 22.44 0.23 -0.47 16 21 C -0.20 -4.93 10.04 22.46 0.23 -4.70 16 22 C 0.30 8.92 7.48 84.78 0.63 9.56 16 23 O -0.32 -9.55 10.48 -89.95 -0.94 -10.49 16 24 C 0.04 1.02 10.49 113.37 1.19 2.21 16 25 N -0.55 -17.75 8.05 -296.97 -2.39 -20.14 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.21 3.90 -2.39 -0.01 2.20 16 28 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 29 H 0.07 3.76 5.93 -2.39 -0.01 3.75 16 30 H 0.01 0.67 7.99 -2.39 -0.02 0.65 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.33 14.63 6.23 -89.69 -0.56 14.07 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.15 7.10 -2.39 -0.02 1.14 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.12 2.32 8.11 -2.39 -0.02 2.30 16 38 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.04 1.35 7.89 -2.39 -0.02 1.33 16 Total: -1.00 -67.67 340.66 1.69 -65.98 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 0.44 Total: 27.90 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 5.12 Total: -23.92 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -4.95 Total: -107.05 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.94 Total: -10.49 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -67.67 1.69 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.732 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds