Wall clock time and date at job start Tue Mar 31 2020 01:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 N 1.46498 * 109.47057 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99955 * 266.50962 * 4 3 2 6 6 H 1.08008 * 119.99634 * 143.91881 * 5 4 3 7 7 C 1.38804 * 119.99811 * 323.91664 * 5 4 3 8 8 N 1.31616 * 120.00518 * 337.26449 * 7 5 4 9 9 Si 1.86812 * 119.99732 * 157.26792 * 7 5 4 10 10 H 1.48497 * 109.46775 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47111 * 119.99911 * 9 7 5 12 12 H 1.48501 * 109.46747 * 239.99888 * 9 7 5 13 13 C 1.46502 * 120.00021 * 86.78049 * 4 3 2 14 14 C 1.50703 * 109.46968 * 94.95172 * 13 4 3 15 15 C 1.38827 * 120.35702 * 272.63369 * 14 13 4 16 16 C 1.50705 * 120.75695 * 359.97438 * 15 14 13 17 17 C 1.38376 * 118.48559 * 179.97438 * 15 14 13 18 18 C 1.38918 * 119.11358 * 0.02562 * 17 15 14 19 19 O 1.35678 * 119.68412 * 180.02562 * 18 17 15 20 20 C 1.42903 * 116.99740 * 179.97438 * 19 18 17 21 21 N 1.32247 * 120.62946 * 0.02562 * 18 17 15 22 22 C 1.31967 * 121.64712 * 359.69532 * 21 18 17 23 23 C 1.50701 * 119.58301 * 180.30290 * 22 21 18 24 24 H 1.08995 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47113 * 300.00351 * 1 2 3 26 26 H 1.09005 * 109.46728 * 59.99575 * 1 2 3 27 27 H 1.09002 * 109.46667 * 240.00247 * 2 1 3 28 28 H 1.08997 * 109.47035 * 120.00433 * 2 1 3 29 29 H 1.09004 * 109.46973 * 59.99990 * 3 2 1 30 30 H 1.08997 * 109.47021 * 299.99890 * 3 2 1 31 31 H 0.96998 * 119.99964 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47260 * 214.95253 * 13 4 3 33 33 H 1.08995 * 109.47240 * 334.95431 * 13 4 3 34 34 H 1.09003 * 109.46644 * 94.37149 * 16 15 14 35 35 H 1.08992 * 109.47194 * 214.37225 * 16 15 14 36 36 H 1.09005 * 109.46845 * 334.37647 * 16 15 14 37 37 H 1.08004 * 120.44185 * 180.02562 * 17 15 14 38 38 H 1.09006 * 109.46852 * 60.00166 * 20 19 18 39 39 H 1.09004 * 109.46863 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47468 * 299.99738 * 20 19 18 41 41 H 1.08998 * 109.47165 * 267.23971 * 23 22 21 42 42 H 1.09001 * 109.46804 * 27.24125 * 23 22 21 43 43 H 1.09003 * 109.47002 * 147.23633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5148 1.1846 6 1 5.1138 0.9704 1.3081 7 6 3.6944 2.2878 2.2259 8 7 2.8618 3.2756 1.9744 9 14 4.2105 1.9262 3.9846 10 1 5.1462 0.7732 3.9986 11 1 4.8847 3.1186 4.5577 12 1 3.0101 1.5988 4.7952 13 6 4.2380 1.3710 -1.2658 14 6 4.5956 2.7632 -1.7185 15 6 3.7053 3.5018 -2.4860 16 6 2.3687 2.9286 -2.8811 17 6 4.0731 4.7763 -2.8799 18 6 5.3136 5.2706 -2.4969 19 8 5.6858 6.5189 -2.8763 20 6 6.9732 6.9696 -2.4501 21 7 6.1352 4.5359 -1.7660 22 6 5.8103 3.3195 -1.3706 23 6 6.7795 2.5256 -0.5331 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5158 3.8155 2.7021 32 1 5.1491 0.7891 -1.1260 33 1 3.6138 0.8927 -2.0205 34 1 1.6123 3.2409 -2.1610 35 1 2.0973 3.2900 -3.8729 36 1 2.4299 1.8404 -2.8950 37 1 3.4047 5.3787 -3.4772 38 1 7.7403 6.3028 -2.8440 39 1 7.1454 7.9801 -2.8208 40 1 7.0161 6.9696 -1.3610 41 1 7.3995 1.9077 -1.1826 42 1 7.4137 3.2077 0.0332 43 1 6.2263 1.8874 0.1559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359243759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:49 Heat of formation + Delta-G solvation = -11.303526 kcal Electronic energy + Delta-G solvation = -22907.519501 eV Core-core repulsion = 19759.818185 eV Total energy + Delta-G solvation = -3147.701316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62478 -39.33052 -37.67241 -35.05815 -34.24409 -33.81532 -31.85628 -29.54531 -28.92406 -27.89798 -27.14807 -26.33242 -23.99476 -22.47974 -21.97132 -21.36490 -18.95955 -18.38813 -17.85243 -17.04198 -16.86704 -16.01447 -15.96155 -15.70812 -15.23863 -14.98653 -14.65801 -14.51755 -14.26694 -13.92220 -13.74687 -13.56284 -13.26319 -13.18562 -13.10245 -12.89622 -12.77494 -12.61351 -12.41140 -12.30171 -12.20312 -11.96637 -11.78690 -11.67443 -11.43202 -11.13098 -10.48370 -10.38334 -10.18967 -9.08904 -8.47107 -7.76669 -5.32241 0.35561 0.50086 1.43301 1.49004 1.56070 2.23272 2.53316 2.88306 3.31005 3.43792 3.88948 3.94961 4.16015 4.20991 4.37412 4.41387 4.42613 4.46346 4.58168 4.59859 4.66973 4.71865 4.76618 4.78663 4.83645 4.90223 4.91751 4.99740 5.09855 5.15995 5.23317 5.27733 5.37383 5.41553 5.45448 5.66887 5.68555 5.76592 5.77702 6.00516 6.38371 6.52642 7.07094 7.24396 7.94257 8.46024 9.18677 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.006992 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.043110 B = 4003.463937 C = 5055.565682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.139 3.861 4 N -0.582 5.582 5 C -0.246 4.246 6 H 0.066 0.934 7 C -0.033 4.033 8 N -0.910 5.910 9 Si 0.938 3.062 10 H -0.263 1.263 11 H -0.302 1.302 12 H -0.294 1.294 13 C 0.184 3.816 14 C -0.172 4.172 15 C -0.011 4.011 16 C -0.106 4.106 17 C -0.211 4.211 18 C 0.288 3.712 19 O -0.324 6.324 20 C 0.042 3.958 21 N -0.563 5.563 22 C 0.161 3.839 23 C -0.106 4.106 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.244 0.756 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.055 0.945 39 H 0.126 0.874 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -1.242 -10.252 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.014 3.986 4 N -0.301 5.301 5 C -0.376 4.376 6 H 0.083 0.917 7 C -0.231 4.231 8 N -0.554 5.554 9 Si 0.768 3.232 10 H -0.187 1.187 11 H -0.230 1.230 12 H -0.221 1.221 13 C 0.058 3.942 14 C -0.177 4.177 15 C -0.019 4.019 16 C -0.162 4.162 17 C -0.232 4.232 18 C 0.109 3.891 19 O -0.232 6.232 20 C -0.053 4.053 21 N -0.288 5.288 22 C 0.025 3.975 23 C -0.163 4.163 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.167 0.833 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.924 -0.620 -10.057 10.258 hybrid contribution -0.246 0.252 1.370 1.414 sum 1.678 -0.368 -8.687 8.855 Atomic orbital electron populations 1.21641 0.95376 1.01480 1.01205 1.21944 0.95516 0.99245 1.00335 1.21093 0.82898 0.93838 1.00798 1.44168 1.01434 1.84046 1.00486 1.19222 1.07204 1.20877 0.90318 0.91670 1.25671 1.00656 0.95064 1.01660 1.70171 1.36409 1.18026 1.30818 0.85658 0.77534 0.77482 0.82522 1.18663 1.22977 1.22082 1.20031 0.96581 0.89286 0.88312 1.21634 0.94227 1.02659 0.99161 1.20241 0.96560 0.92295 0.92838 1.20921 0.91398 1.01837 1.02038 1.20997 0.96227 0.97483 1.08470 1.19913 0.91136 0.85629 0.92441 1.86155 1.37999 1.26754 1.72306 1.22939 0.81670 1.00788 0.99912 1.67013 1.36365 1.08810 1.16652 1.20978 0.94353 0.88900 0.93240 1.20916 0.97371 0.99164 0.98812 0.91889 0.94462 0.92123 0.92436 0.94634 0.92894 0.93894 0.94651 0.92356 0.90929 0.91184 0.89068 0.89934 0.83290 0.92645 0.85590 0.94016 0.89178 0.92221 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -4.66 6.26 30.59 0.19 -4.47 16 3 C 0.14 5.96 5.24 86.38 0.45 6.41 16 4 N -0.58 -26.10 2.43 -706.34 -1.72 -27.82 16 5 C -0.25 -12.35 8.01 84.03 0.67 -11.68 16 6 H 0.07 3.23 6.74 -2.91 -0.02 3.21 16 7 C -0.03 -1.76 4.90 84.86 0.42 -1.34 16 8 N -0.91 -52.18 11.50 21.65 0.25 -51.94 16 9 Si 0.94 43.85 29.61 68.60 2.03 45.88 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 C 0.18 6.99 4.97 85.63 0.43 7.42 16 14 C -0.17 -6.85 5.44 -19.77 -0.11 -6.96 16 15 C -0.01 -0.41 5.91 -19.69 -0.12 -0.53 16 16 C -0.11 -3.08 8.33 71.24 0.59 -2.49 16 17 C -0.21 -7.74 9.76 22.47 0.22 -7.52 16 18 C 0.29 11.33 7.49 84.79 0.63 11.97 16 19 O -0.32 -11.31 10.48 -89.95 -0.94 -12.25 16 20 C 0.04 1.15 10.38 113.37 1.18 2.32 16 21 N -0.56 -23.40 9.13 -296.99 -2.71 -26.11 16 22 C 0.16 6.68 6.78 42.49 0.29 6.97 16 23 C -0.11 -3.90 9.25 71.24 0.66 -3.24 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.05 2.73 5.50 -2.39 -0.01 2.72 16 30 H 0.04 1.71 4.59 -2.39 -0.01 1.70 16 31 H 0.24 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 2.13 6.57 -2.38 -0.02 2.12 16 33 H 0.07 2.40 6.03 -2.39 -0.01 2.38 16 34 H 0.07 2.24 6.78 -2.39 -0.02 2.22 16 35 H 0.09 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.08 2.24 5.72 -2.38 -0.01 2.23 16 37 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.05 1.49 8.10 -2.38 -0.02 1.47 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 41 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.09 3.71 3.84 -2.39 -0.01 3.70 16 Total: -1.00 -63.24 338.71 4.13 -59.11 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.00 Total: 19.63 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 6.22 Total: -6.52 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.18 Total: -105.86 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.94 Total: -12.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.24 4.13 -59.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359243759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.811 kcal (2) G-P(sol) polarization free energy of solvation -63.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds