Wall clock time and date at job start Tue Mar 31 2020 00:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47297 * 120.00331 * 2 1 3 5 5 H 1.09000 * 109.47202 * 300.00051 * 4 2 1 6 6 O 1.42906 * 109.47442 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.47075 * 60.00046 * 4 2 1 8 8 N 1.46904 * 109.47010 * 185.00236 * 7 4 2 9 9 C 1.46905 * 111.00100 * 66.04539 * 8 7 4 10 10 C 1.50693 * 109.46998 * 193.95424 * 9 8 7 11 11 H 1.08002 * 120.00178 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00150 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99701 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00490 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47107 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47249 * 119.99679 * 14 12 10 17 17 H 1.48495 * 109.47222 * 239.99801 * 14 12 10 18 18 C 1.46896 * 110.99889 * 189.99747 * 8 7 4 19 19 C 1.50706 * 109.47320 * 169.99825 * 18 8 7 20 20 C 1.38675 * 120.41529 * 89.99996 * 19 18 8 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 1.08992 * 109.46918 * 299.99824 * 1 2 3 26 26 H 1.09000 * 109.46686 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47460 * 240.00167 * 2 1 3 29 29 H 1.09002 * 109.46838 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47058 * 299.99924 * 3 2 1 31 31 H 1.09000 * 109.46744 * 60.00305 * 3 2 1 32 32 H 0.96699 * 113.99985 * 299.99913 * 6 4 2 33 33 H 1.09002 * 109.47439 * 65.00284 * 7 4 2 34 34 H 1.08997 * 109.47372 * 305.00065 * 7 4 2 35 35 H 1.09002 * 109.46887 * 313.95372 * 9 8 7 36 36 H 1.09001 * 109.46998 * 73.95274 * 9 8 7 37 37 H 0.97008 * 120.00274 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.47342 * 49.99939 * 18 8 7 39 39 H 1.08998 * 109.47612 * 289.99867 * 18 8 7 40 40 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 41 41 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 43 43 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 8 3.4691 -0.7218 1.2489 7 6 1.5300 -2.1638 1.2491 8 7 1.9187 -2.8206 2.5043 9 6 1.2359 -2.2086 3.6521 10 6 1.8981 -2.6586 4.9288 11 1 2.7414 -3.3323 4.8914 12 6 1.4266 -2.2113 6.1447 13 7 0.3993 -1.3914 6.1903 14 14 2.2468 -2.7696 7.7274 15 1 3.3717 -3.6844 7.4059 16 1 2.7643 -1.5866 8.4608 17 1 1.2563 -3.4823 8.5736 18 6 1.6576 -4.2650 2.4454 19 6 2.2871 -4.9384 3.6377 20 6 1.5709 -5.0949 4.8148 21 6 2.1902 -5.7208 5.8856 22 6 3.4934 -6.1600 5.7471 23 7 4.1425 -5.9982 4.6108 24 6 3.5850 -5.4079 3.5716 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8621 -1.1638 0.4838 33 1 1.9647 -2.7029 0.4072 34 1 0.4438 -2.1652 1.1595 35 1 1.2966 -1.1231 3.5744 36 1 0.1898 -2.5146 3.6579 37 1 0.0673 -1.0769 7.0458 38 1 2.0843 -4.6744 1.5297 39 1 0.5819 -4.4406 2.4550 40 1 0.5549 -4.7376 4.8955 41 1 1.6625 -5.8593 6.8177 42 1 3.9845 -6.6448 6.5779 43 1 4.1494 -5.2899 2.6585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385382762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:11 Heat of formation + Delta-G solvation = -9.678118 kcal Electronic energy + Delta-G solvation = -22854.685860 eV Core-core repulsion = 19707.055027 eV Total energy + Delta-G solvation = -3147.630833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60153 -38.38966 -36.00762 -33.85401 -32.73414 -31.82824 -30.81904 -28.25874 -27.36609 -26.72054 -24.45284 -23.02536 -22.62615 -21.51262 -20.17413 -19.89811 -16.72967 -16.28081 -16.17430 -15.55148 -15.30201 -14.95316 -14.78118 -14.23723 -13.97602 -13.71701 -13.19692 -13.01646 -12.79792 -12.53171 -12.20519 -12.11067 -12.06429 -11.99719 -11.76685 -11.42769 -11.18560 -11.07421 -10.82141 -10.75724 -10.59038 -10.53771 -10.27882 -9.83964 -9.46073 -9.34597 -8.67474 -8.63536 -8.37436 -7.83154 -7.30020 -6.15406 -4.04427 1.96329 2.26387 3.25180 3.35146 3.43920 4.33987 4.47430 4.75175 4.84352 5.02713 5.21136 5.24282 5.25321 5.32774 5.48991 5.55954 5.61910 5.71088 5.75087 5.79520 5.82487 5.93408 5.96406 5.98087 6.06193 6.09899 6.15563 6.20254 6.26911 6.41862 6.48832 6.58454 6.62268 7.03351 7.13404 7.15686 7.25784 7.57899 7.74260 7.98721 8.06992 8.17061 8.45246 8.80643 8.96312 9.49382 10.93945 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.006319 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.937792 B = 4430.255749 C = 5315.101801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.141 4.141 4 C 0.115 3.885 5 H 0.105 0.895 6 O -0.542 6.542 7 C 0.024 3.976 8 N -0.524 5.524 9 C 0.188 3.812 10 C -0.490 4.490 11 H 0.080 0.920 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.879 3.121 15 H -0.259 1.259 16 H -0.286 1.286 17 H -0.283 1.283 18 C 0.112 3.888 19 C -0.116 4.116 20 C 0.019 3.981 21 C -0.210 4.210 22 C 0.095 3.905 23 N -0.513 5.513 24 C 0.101 3.899 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.361 0.639 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.034 0.966 36 H -0.010 1.010 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -2.279 -10.423 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.198 4.198 4 C 0.056 3.944 5 H 0.123 0.877 6 O -0.345 6.345 7 C -0.104 4.104 8 N -0.248 5.248 9 C 0.063 3.937 10 C -0.528 4.528 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.706 3.294 15 H -0.183 1.183 16 H -0.213 1.213 17 H -0.209 1.209 18 C -0.016 4.016 19 C -0.118 4.118 20 C -0.007 4.007 21 C -0.231 4.231 22 C -0.063 4.063 23 N -0.223 5.223 24 C -0.054 4.054 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.206 0.794 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.007 0.993 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.146 0.854 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.841 -2.076 -9.756 10.010 hybrid contribution -1.476 0.000 0.596 1.591 sum -0.634 -2.076 -9.160 9.414 Atomic orbital electron populations 1.21868 0.94910 1.02031 1.01794 1.21824 0.96426 0.97361 0.98985 1.21734 1.01574 0.95327 1.01192 1.22057 0.80963 0.94001 0.97382 0.87724 1.86689 1.18823 1.80251 1.48739 1.22802 0.98105 0.95831 0.93692 1.62140 1.59379 1.00748 1.02524 1.19856 0.91427 0.95318 0.87080 1.21677 1.14804 1.26616 0.89672 0.90229 1.24953 0.95079 0.95147 0.99247 1.69971 1.24580 1.32443 1.25771 0.86704 0.80286 0.78940 0.83441 1.18299 1.21262 1.20908 1.20724 0.96910 0.89291 0.94719 1.20342 0.95692 0.99169 0.96635 1.21167 1.00415 0.87936 0.91205 1.21746 0.97244 1.04352 0.99735 1.22343 0.91821 0.97238 0.94894 1.67547 1.37606 1.16747 1.00375 1.22224 0.91811 0.94759 0.96574 0.92267 0.92961 0.92306 0.91534 0.92094 0.93359 0.92631 0.79396 0.92048 0.94758 0.94807 0.99271 0.92897 0.91813 0.95229 0.85410 0.86561 0.84569 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.85 37.16 0.33 -1.44 16 2 C -0.13 -1.57 2.69 -90.62 -0.24 -1.81 16 3 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 4 C 0.12 1.84 2.53 -26.73 -0.07 1.77 16 5 H 0.11 2.04 6.12 -51.93 -0.32 1.72 16 6 O -0.54 -9.05 12.61 -35.23 -0.44 -9.50 16 7 C 0.02 0.39 4.38 -3.82 -0.02 0.38 16 8 N -0.52 -10.44 4.51 -237.51 -1.07 -11.51 16 9 C 0.19 4.54 4.54 -4.98 -0.02 4.52 16 10 C -0.49 -12.80 5.39 -34.44 -0.19 -12.98 16 11 H 0.08 2.14 4.69 -52.49 -0.25 1.90 16 12 C 0.06 1.57 5.44 -17.82 -0.10 1.48 16 13 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 14 Si 0.88 21.29 27.67 -169.99 -4.70 16.59 16 15 H -0.26 -6.25 6.87 56.52 0.39 -5.86 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.11 2.02 5.14 -4.98 -0.03 1.99 16 19 C -0.12 -2.26 3.47 -104.48 -0.36 -2.63 16 20 C 0.02 0.39 6.04 -39.28 -0.24 0.16 16 21 C -0.21 -4.09 7.88 -39.44 -0.31 -4.40 16 22 C 0.09 1.82 11.18 -17.55 -0.20 1.62 16 23 N -0.51 -10.34 10.36 -13.25 -0.14 -10.48 16 24 C 0.10 1.96 10.66 -17.55 -0.19 1.77 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.70 6.32 -51.93 -0.33 0.37 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.36 4.51 9.04 45.56 0.41 4.92 16 33 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 35 H 0.03 0.89 5.91 -51.93 -0.31 0.59 16 36 H -0.01 -0.27 7.99 -51.93 -0.41 -0.68 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 0.98 7.88 -51.92 -0.41 0.57 16 39 H 0.03 0.53 7.97 -51.93 -0.41 0.12 16 40 H 0.13 2.71 7.69 -52.49 -0.40 2.30 16 41 H 0.12 2.08 8.03 -52.49 -0.42 1.66 16 42 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 43 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -29.94 335.29 -7.94 -37.88 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.09 Total: 7.31 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.29 Total: -10.95 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.47 Total: -46.39 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.44 Total: -9.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.70 Total: 16.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.94 -7.94 -37.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385382762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.205 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds