Wall clock time and date at job start Tue Mar 31 2020 00:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47297 * 120.00331 * 2 1 3 5 5 H 1.09000 * 109.47202 * 300.00051 * 4 2 1 6 6 O 1.42906 * 109.47442 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.47075 * 60.00046 * 4 2 1 8 8 N 1.46904 * 109.47010 * 185.00236 * 7 4 2 9 9 C 1.46905 * 111.00100 * 66.04539 * 8 7 4 10 10 C 1.50693 * 109.46998 * 193.95424 * 9 8 7 11 11 H 1.08002 * 120.00178 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00150 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99701 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00490 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47107 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47249 * 119.99679 * 14 12 10 17 17 H 1.48495 * 109.47222 * 239.99801 * 14 12 10 18 18 C 1.46896 * 110.99889 * 189.99747 * 8 7 4 19 19 C 1.50706 * 109.47320 * 169.99825 * 18 8 7 20 20 C 1.38675 * 120.41529 * 89.99996 * 19 18 8 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 1.08992 * 109.46918 * 299.99824 * 1 2 3 26 26 H 1.09000 * 109.46686 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47460 * 240.00167 * 2 1 3 29 29 H 1.09002 * 109.46838 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47058 * 299.99924 * 3 2 1 31 31 H 1.09000 * 109.46744 * 60.00305 * 3 2 1 32 32 H 0.96699 * 113.99985 * 299.99913 * 6 4 2 33 33 H 1.09002 * 109.47439 * 65.00284 * 7 4 2 34 34 H 1.08997 * 109.47372 * 305.00065 * 7 4 2 35 35 H 1.09002 * 109.46887 * 313.95372 * 9 8 7 36 36 H 1.09001 * 109.46998 * 73.95274 * 9 8 7 37 37 H 0.97008 * 120.00274 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.47342 * 49.99939 * 18 8 7 39 39 H 1.08998 * 109.47612 * 289.99867 * 18 8 7 40 40 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 41 41 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 43 43 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 8 3.4691 -0.7218 1.2489 7 6 1.5300 -2.1638 1.2491 8 7 1.9187 -2.8206 2.5043 9 6 1.2359 -2.2086 3.6521 10 6 1.8981 -2.6586 4.9288 11 1 2.7414 -3.3323 4.8914 12 6 1.4266 -2.2113 6.1447 13 7 0.3993 -1.3914 6.1903 14 14 2.2468 -2.7696 7.7274 15 1 3.3717 -3.6844 7.4059 16 1 2.7643 -1.5866 8.4608 17 1 1.2563 -3.4823 8.5736 18 6 1.6576 -4.2650 2.4454 19 6 2.2871 -4.9384 3.6377 20 6 1.5709 -5.0949 4.8148 21 6 2.1902 -5.7208 5.8856 22 6 3.4934 -6.1600 5.7471 23 7 4.1425 -5.9982 4.6108 24 6 3.5850 -5.4079 3.5716 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8621 -1.1638 0.4838 33 1 1.9647 -2.7029 0.4072 34 1 0.4438 -2.1652 1.1595 35 1 1.2966 -1.1231 3.5744 36 1 0.1898 -2.5146 3.6579 37 1 0.0673 -1.0769 7.0458 38 1 2.0843 -4.6744 1.5297 39 1 0.5819 -4.4406 2.4550 40 1 0.5549 -4.7376 4.8955 41 1 1.6625 -5.8593 6.8177 42 1 3.9845 -6.6448 6.5779 43 1 4.1494 -5.2899 2.6585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385382762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:10 Heat of formation + Delta-G solvation = -31.253230 kcal Electronic energy + Delta-G solvation = -22855.621427 eV Core-core repulsion = 19707.055027 eV Total energy + Delta-G solvation = -3148.566400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13800 -39.68875 -37.50094 -34.98836 -34.69919 -33.36431 -32.34621 -29.86003 -28.93697 -27.76340 -25.98691 -24.73288 -24.18055 -22.91996 -21.56244 -21.23559 -18.68574 -17.78735 -17.46864 -17.06332 -16.69141 -16.55161 -16.31492 -15.79339 -15.34342 -15.04538 -14.65399 -14.53196 -14.27069 -13.97672 -13.80401 -13.70002 -13.54936 -13.09791 -13.02541 -12.88448 -12.72642 -12.60674 -12.46540 -12.26990 -11.99752 -11.83332 -11.77941 -11.35394 -11.25157 -10.69757 -10.55813 -10.17496 -10.05442 -9.45283 -8.90819 -8.20965 -6.15238 0.44340 0.69173 1.31400 1.37565 1.49002 2.37715 2.97497 3.17976 3.40255 3.70892 3.78027 3.84893 4.03302 4.10754 4.18123 4.22198 4.33722 4.34599 4.42503 4.52879 4.61046 4.66506 4.73294 4.80506 4.85160 4.95773 4.99554 5.00399 5.08615 5.11082 5.18842 5.23651 5.29764 5.44255 5.48953 5.51706 5.67072 5.73150 6.05407 6.11121 6.38103 6.66056 6.91393 7.11864 7.27433 7.43071 8.89297 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.006319 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.937792 B = 4430.255749 C = 5315.101801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.140 4.140 4 C 0.120 3.880 5 H 0.057 0.943 6 O -0.564 6.564 7 C 0.025 3.975 8 N -0.532 5.532 9 C 0.207 3.793 10 C -0.486 4.486 11 H 0.075 0.925 12 C 0.014 3.986 13 N -0.927 5.927 14 Si 0.926 3.074 15 H -0.254 1.254 16 H -0.295 1.295 17 H -0.272 1.272 18 C 0.112 3.888 19 C -0.122 4.122 20 C 0.003 3.997 21 C -0.212 4.212 22 C 0.087 3.913 23 N -0.523 5.523 24 C 0.098 3.902 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.381 0.619 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.004 0.996 36 H -0.036 1.036 37 H 0.260 0.740 38 H 0.101 0.899 39 H 0.027 0.973 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.166 0.834 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -3.582 -12.195 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.197 4.197 4 C 0.061 3.939 5 H 0.075 0.925 6 O -0.370 6.370 7 C -0.103 4.103 8 N -0.256 5.256 9 C 0.081 3.919 10 C -0.524 4.524 11 H 0.093 0.907 12 C -0.184 4.184 13 N -0.568 5.568 14 Si 0.752 3.248 15 H -0.178 1.178 16 H -0.222 1.222 17 H -0.197 1.197 18 C -0.016 4.016 19 C -0.125 4.125 20 C -0.023 4.023 21 C -0.232 4.232 22 C -0.070 4.070 23 N -0.233 5.233 24 C -0.057 4.057 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.229 0.771 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.022 0.978 36 H -0.019 1.019 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.045 0.955 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.183 0.817 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.008 -3.406 -11.548 12.206 hybrid contribution -1.780 0.324 1.073 2.103 sum 0.229 -3.082 -10.475 10.921 Atomic orbital electron populations 1.21866 0.94615 1.02143 1.01877 1.21737 0.96534 0.97258 0.97979 1.21725 1.01366 0.95247 1.01347 1.21871 0.80870 0.93888 0.97294 0.92515 1.86637 1.19183 1.80825 1.50360 1.22923 0.98526 0.96006 0.92846 1.62050 1.58850 1.01913 1.02778 1.19447 0.90178 0.93676 0.88609 1.21801 1.14148 1.25999 0.90436 0.90730 1.25551 0.95612 0.95500 1.01781 1.70070 1.26299 1.34324 1.26110 0.85974 0.79776 0.78282 0.80760 1.17774 1.22236 1.19714 1.20837 0.97068 0.87976 0.95756 1.20559 0.95987 0.99056 0.96863 1.21190 0.99914 0.88894 0.92325 1.21974 0.97633 1.03682 0.99943 1.22821 0.91719 0.96991 0.95501 1.67613 1.37958 1.16830 1.00861 1.22615 0.91736 0.94047 0.97289 0.94441 0.90612 0.92199 0.88644 0.92380 0.91007 0.94660 0.77126 0.88388 0.94628 0.97794 1.01874 0.93091 0.88074 0.95452 0.87212 0.85287 0.81733 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.85 71.98 0.64 -2.69 16 2 C -0.12 -2.66 2.69 -10.79 -0.03 -2.69 16 3 C -0.14 -3.20 9.05 71.98 0.65 -2.55 16 4 C 0.12 3.79 2.53 30.59 0.08 3.87 16 5 H 0.06 2.35 6.12 -2.39 -0.01 2.34 16 6 O -0.56 -18.22 12.61 -148.98 -1.88 -20.10 16 7 C 0.02 0.76 4.38 86.30 0.38 1.14 16 8 N -0.53 -20.84 4.51 -905.34 -4.08 -24.92 16 9 C 0.21 10.33 4.54 85.55 0.39 10.72 16 10 C -0.49 -25.83 5.39 25.60 0.14 -25.69 16 11 H 0.07 4.00 4.69 -2.91 -0.01 3.99 16 12 C 0.01 0.77 5.44 84.65 0.46 1.23 16 13 N -0.93 -54.33 13.29 21.45 0.28 -54.04 16 14 Si 0.93 44.01 27.67 68.60 1.90 45.91 16 15 H -0.25 -11.73 6.87 99.48 0.68 -11.05 16 16 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.11 3.82 5.14 85.56 0.44 4.26 16 19 C -0.12 -4.61 3.47 -19.77 -0.07 -4.68 16 20 C 0.00 0.14 6.04 22.47 0.14 0.27 16 21 C -0.21 -7.95 7.88 22.36 0.18 -7.77 16 22 C 0.09 3.14 11.18 84.68 0.95 4.08 16 23 N -0.52 -19.82 10.36 -195.85 -2.03 -21.84 16 24 C 0.10 3.56 10.66 84.67 0.90 4.46 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.35 7.68 -2.39 -0.02 1.34 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.38 8.52 9.04 -74.06 -0.67 7.85 16 33 H 0.10 2.32 7.93 -2.39 -0.02 2.30 16 34 H 0.04 1.10 6.15 -2.39 -0.01 1.09 16 35 H 0.00 0.23 5.91 -2.39 -0.01 0.21 16 36 H -0.04 -1.96 7.99 -2.39 -0.02 -1.98 16 37 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.10 2.71 7.88 -2.38 -0.02 2.69 16 39 H 0.03 0.95 7.97 -2.39 -0.02 0.94 16 40 H 0.11 4.78 7.69 -2.91 -0.02 4.76 16 41 H 0.13 4.42 8.03 -2.91 -0.02 4.39 16 42 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.16 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -66.04 335.29 -0.28 -66.31 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.30 Total: 24.72 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.23 Total: -16.03 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -5.83 Total: -100.81 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.88 Total: -20.10 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -66.04 -0.28 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385382762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.061 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds