Wall clock time and date at job start Tue Mar 31 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46878 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37410 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37256 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37328 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21697 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.46677 * 120.00425 * 180.02562 * 14 13 3 17 17 C 1.37868 * 126.23850 * 180.02562 * 16 14 13 18 18 C 1.39833 * 107.08900 * 179.97438 * 17 16 14 19 19 C 1.50696 * 126.06522 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47338 * 90.00153 * 19 18 17 21 21 C 1.53008 * 109.47332 * 64.99743 * 20 19 18 22 22 C 1.53000 * 109.47391 * 184.99495 * 20 19 18 23 23 C 1.35447 * 107.86355 * 359.97438 * 18 17 16 24 24 N 1.35537 * 108.87580 * 359.76971 * 23 18 17 25 25 H 0.96996 * 125.68494 * 180.26735 * 24 23 18 26 26 H 1.09000 * 109.47408 * 299.99704 * 1 2 3 27 27 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47392 * 60.00536 * 1 2 3 29 29 H 1.09001 * 109.47253 * 120.00237 * 2 1 3 30 30 H 1.09000 * 109.47408 * 240.00296 * 2 1 3 31 31 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 33 33 H 1.08007 * 126.45529 * 359.97438 * 17 16 14 34 34 H 1.09010 * 109.46578 * 209.99840 * 19 18 17 35 35 H 1.09000 * 109.47709 * 329.99797 * 19 18 17 36 36 H 1.08997 * 109.47224 * 304.99569 * 20 19 18 37 37 H 1.08997 * 109.47108 * 59.99755 * 21 20 19 38 38 H 1.08992 * 109.47288 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46661 * 300.00211 * 21 20 19 40 40 H 1.09001 * 109.46626 * 59.99617 * 22 20 19 41 41 H 1.08992 * 109.47411 * 179.97438 * 22 20 19 42 42 H 1.09005 * 109.47279 * 300.00030 * 22 20 19 43 43 H 1.08000 * 125.56773 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6001 1.9834 -0.8379 5 6 3.5410 1.4447 -0.1330 6 1 4.1541 1.8171 0.6744 7 6 4.1317 0.9713 -1.2854 8 7 3.3877 0.6476 -2.3205 9 14 5.9886 0.7894 -1.3763 10 1 6.3863 -0.5216 -0.8034 11 1 6.4242 0.8626 -2.7942 12 1 6.6314 1.8827 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6614 1.3794 15 8 -0.3397 2.6308 0.4484 16 6 0.0632 3.3149 2.6363 17 6 -1.1409 3.9313 2.9027 18 6 -1.0740 4.4148 4.2130 19 6 -2.1628 5.1614 4.9398 20 6 -3.0621 4.1649 5.6739 21 6 -2.2562 3.4594 6.7666 22 6 -4.2379 4.9103 6.3084 23 6 0.1425 4.0920 4.7134 24 7 0.8412 3.4186 3.7672 25 1 1.7405 3.0697 3.8691 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8033 0.3142 -3.1311 32 1 2.2840 2.1188 1.9978 33 1 -1.9782 4.0234 2.2266 34 1 -1.7151 5.8460 5.6604 35 1 -2.7571 5.7269 4.2222 36 1 -3.4393 3.4264 4.9665 37 1 -1.8790 4.1979 7.4739 38 1 -2.8967 2.7491 7.2892 39 1 -1.4185 2.9283 6.3145 40 1 -4.8120 5.4130 5.5300 41 1 -4.8788 4.2004 6.8310 42 1 -3.8607 5.6489 7.0159 43 1 0.4964 4.3286 5.7060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412252083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:38 Heat of formation + Delta-G solvation = -24.984185 kcal Electronic energy + Delta-G solvation = -21661.536128 eV Core-core repulsion = 18513.241575 eV Total energy + Delta-G solvation = -3148.294554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13269 -38.57465 -36.40219 -35.05215 -32.48144 -31.48537 -30.90043 -29.20168 -27.24816 -27.13292 -26.03557 -23.35955 -22.22371 -20.51514 -19.99966 -19.57468 -19.03148 -18.26194 -16.37172 -15.43444 -15.27260 -14.98410 -14.86702 -14.26844 -14.21145 -13.77368 -13.43248 -13.28164 -13.07987 -12.70935 -12.56286 -12.35448 -12.05488 -11.86819 -11.55947 -11.49241 -11.35759 -11.05338 -11.00078 -10.89036 -10.82452 -10.65678 -10.38107 -10.23529 -9.71614 -9.18412 -9.12704 -8.61397 -8.53077 -8.05437 -7.77775 -6.17652 -4.24728 1.86943 2.86812 3.21738 3.28558 3.29672 3.31449 4.03084 4.06720 4.35616 4.81684 4.90036 4.93571 5.12780 5.15421 5.35257 5.44466 5.47277 5.56230 5.64175 5.71388 5.75719 5.85449 5.96338 6.06942 6.20708 6.21825 6.32654 6.34673 6.40084 6.44492 6.59951 6.93798 6.98564 7.11036 7.19052 7.29976 7.37478 7.52502 7.59771 7.70341 7.82061 8.04611 8.60325 8.74757 9.05851 9.41597 10.90210 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.003503 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.380498 B = 7992.355543 C = 8391.576654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.539 4.539 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.708 5.708 14 C 0.571 3.429 15 O -0.535 6.535 16 C -0.034 4.034 17 C -0.118 4.118 18 C -0.174 4.174 19 C -0.039 4.039 20 C -0.093 4.093 21 C -0.147 4.147 22 C -0.147 4.147 23 C 0.010 3.990 24 N -0.539 5.539 25 H 0.416 0.584 26 H 0.041 0.959 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.265 0.735 32 H 0.381 0.619 33 H 0.142 0.858 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 6.143 17.031 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.355 5.355 14 C 0.357 3.643 15 O -0.413 6.413 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.181 4.181 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.204 4.204 22 C -0.205 4.205 23 C -0.126 4.126 24 N -0.135 5.135 25 H 0.253 0.747 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.212 0.788 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.332 5.948 16.085 19.066 hybrid contribution 1.839 -0.350 0.373 1.909 sum -6.492 5.598 16.458 18.557 Atomic orbital electron populations 1.21853 0.97965 0.98244 1.01608 1.21856 0.93036 0.99740 1.01303 1.18822 0.94458 0.89046 0.80832 0.92493 1.21156 0.90554 1.43779 1.02207 0.92255 1.24885 0.98500 0.95042 0.95063 1.69967 1.35437 1.42848 1.03292 0.86510 0.84951 0.78581 0.77344 1.20432 1.21072 1.19962 1.46425 1.14183 1.56346 1.18539 1.17089 0.82933 0.78858 0.85443 1.90812 1.51223 1.60128 1.39131 1.20953 0.94179 1.10715 0.88948 1.21121 0.96472 1.00814 0.96001 1.19305 0.95800 1.07569 0.95406 1.19983 0.93998 0.95993 0.97702 1.21100 0.95174 0.97668 0.97245 1.21863 1.00338 1.00059 0.98118 1.21854 0.97902 1.00149 1.00553 1.21679 0.93603 1.02378 0.94906 1.42021 1.15585 1.44327 1.11517 0.74711 0.93970 0.95728 0.92904 0.94882 0.89831 0.92473 0.78784 0.83986 0.91813 0.91417 0.91065 0.93127 0.93328 0.92153 0.92755 0.92973 0.92905 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.12 -2.89 5.49 -26.73 -0.15 -3.03 16 3 C 0.27 6.74 2.11 -69.08 -0.15 6.60 16 4 H 0.06 1.67 7.55 -51.93 -0.39 1.27 16 5 C -0.54 -14.06 8.67 -34.44 -0.30 -14.36 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.07 16 7 C 0.07 1.85 5.19 -17.82 -0.09 1.75 16 8 N -0.88 -24.68 12.00 55.43 0.67 -24.02 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.59 5.02 -56.24 -0.28 -14.88 16 14 C 0.57 11.74 6.37 -12.85 -0.08 11.66 16 15 O -0.54 -12.86 14.02 5.19 0.07 -12.79 16 16 C -0.03 -0.56 7.06 -81.98 -0.58 -1.14 16 17 C -0.12 -1.83 10.59 -39.12 -0.41 -2.24 16 18 C -0.17 -2.15 4.82 -105.02 -0.51 -2.65 16 19 C -0.04 -0.38 5.18 -27.89 -0.14 -0.52 16 20 C -0.09 -0.85 2.91 -90.62 -0.26 -1.12 16 21 C -0.15 -1.26 8.91 37.16 0.33 -0.93 16 22 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 23 C 0.01 0.11 10.42 -16.91 -0.18 -0.07 16 24 N -0.54 -6.76 5.99 -9.39 -0.06 -6.82 16 25 H 0.42 4.23 8.19 -40.82 -0.33 3.89 16 26 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.26 7.86 -51.93 -0.41 0.85 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 2.20 6.64 -51.93 -0.34 1.86 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.38 6.68 7.66 -40.82 -0.31 6.37 16 33 H 0.14 2.23 8.06 -52.48 -0.42 1.81 16 34 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.58 6.41 -51.93 -0.33 0.24 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -30.44 346.85 -8.29 -38.73 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.03 Total: 8.81 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.86 Total: -9.66 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.33 Total: -45.71 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.44 -8.29 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412252083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.747 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds