Wall clock time and date at job start Tue Mar 31 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46878 * 2 1 4 4 H 1.08991 * 109.47024 * 305.37410 * 3 2 1 5 5 C 1.50700 * 109.47118 * 185.37256 * 3 2 1 6 6 H 1.08000 * 119.99723 * 244.80432 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.80007 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.04138 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.04704 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46497 * 109.46925 * 65.37328 * 3 2 1 14 14 C 1.34778 * 120.00112 * 274.99863 * 13 3 2 15 15 O 1.21697 * 119.99564 * 0.02562 * 14 13 3 16 16 C 1.46677 * 120.00425 * 180.02562 * 14 13 3 17 17 C 1.37868 * 126.23850 * 180.02562 * 16 14 13 18 18 C 1.39833 * 107.08900 * 179.97438 * 17 16 14 19 19 C 1.50696 * 126.06522 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47338 * 90.00153 * 19 18 17 21 21 C 1.53008 * 109.47332 * 64.99743 * 20 19 18 22 22 C 1.53000 * 109.47391 * 184.99495 * 20 19 18 23 23 C 1.35447 * 107.86355 * 359.97438 * 18 17 16 24 24 N 1.35537 * 108.87580 * 359.76971 * 23 18 17 25 25 H 0.96996 * 125.68494 * 180.26735 * 24 23 18 26 26 H 1.09000 * 109.47408 * 299.99704 * 1 2 3 27 27 H 1.09005 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47392 * 60.00536 * 1 2 3 29 29 H 1.09001 * 109.47253 * 120.00237 * 2 1 3 30 30 H 1.09000 * 109.47408 * 240.00296 * 2 1 3 31 31 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 32 32 H 0.96996 * 120.00190 * 95.00124 * 13 3 2 33 33 H 1.08007 * 126.45529 * 359.97438 * 17 16 14 34 34 H 1.09010 * 109.46578 * 209.99840 * 19 18 17 35 35 H 1.09000 * 109.47709 * 329.99797 * 19 18 17 36 36 H 1.08997 * 109.47224 * 304.99569 * 20 19 18 37 37 H 1.08997 * 109.47108 * 59.99755 * 21 20 19 38 38 H 1.08992 * 109.47288 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46661 * 300.00211 * 21 20 19 40 40 H 1.09001 * 109.46626 * 59.99617 * 22 20 19 41 41 H 1.08992 * 109.47411 * 179.97438 * 22 20 19 42 42 H 1.09005 * 109.47279 * 300.00030 * 22 20 19 43 43 H 1.08000 * 125.56773 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6001 1.9834 -0.8379 5 6 3.5410 1.4447 -0.1330 6 1 4.1541 1.8171 0.6744 7 6 4.1317 0.9713 -1.2854 8 7 3.3877 0.6476 -2.3205 9 14 5.9886 0.7894 -1.3763 10 1 6.3863 -0.5216 -0.8034 11 1 6.4242 0.8626 -2.7942 12 1 6.6314 1.8827 -0.6039 13 7 1.6600 2.0948 1.2556 14 6 0.4434 2.6614 1.3794 15 8 -0.3397 2.6308 0.4484 16 6 0.0632 3.3149 2.6363 17 6 -1.1409 3.9313 2.9027 18 6 -1.0740 4.4148 4.2130 19 6 -2.1628 5.1614 4.9398 20 6 -3.0621 4.1649 5.6739 21 6 -2.2562 3.4594 6.7666 22 6 -4.2379 4.9103 6.3084 23 6 0.1425 4.0920 4.7134 24 7 0.8412 3.4186 3.7672 25 1 1.7405 3.0697 3.8691 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8033 0.3142 -3.1311 32 1 2.2840 2.1188 1.9978 33 1 -1.9782 4.0234 2.2266 34 1 -1.7151 5.8460 5.6604 35 1 -2.7571 5.7269 4.2222 36 1 -3.4393 3.4264 4.9665 37 1 -1.8790 4.1979 7.4739 38 1 -2.8967 2.7491 7.2892 39 1 -1.4185 2.9283 6.3145 40 1 -4.8120 5.4130 5.5300 41 1 -4.8788 4.2004 6.8310 42 1 -3.8607 5.6489 7.0159 43 1 0.4964 4.3286 5.7060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412252083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:38 Heat of formation + Delta-G solvation = -43.727952 kcal Electronic energy + Delta-G solvation = -21662.348919 eV Core-core repulsion = 18513.241575 eV Total energy + Delta-G solvation = -3149.107344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26493 -40.21496 -37.16650 -36.92677 -34.36382 -33.07504 -32.19281 -30.43383 -28.95259 -27.87638 -27.02012 -25.18361 -23.77246 -21.73365 -21.22720 -21.02275 -20.37695 -19.45365 -18.15376 -17.23607 -16.66710 -16.40518 -16.06789 -15.73143 -15.34287 -14.82814 -14.65851 -14.55776 -14.37639 -14.24942 -13.77946 -13.50397 -13.44196 -13.29609 -12.97253 -12.94036 -12.69767 -12.65248 -12.31360 -12.22671 -12.11493 -11.74624 -11.66500 -11.58050 -11.36818 -11.12519 -10.90020 -10.56792 -9.80519 -9.66571 -8.97153 -8.21096 -6.36140 0.60382 1.43229 1.44145 1.53748 1.83931 2.24975 2.34864 2.53187 2.60811 3.10585 4.04938 4.08460 4.17904 4.26050 4.33673 4.42932 4.44189 4.50532 4.62259 4.69501 4.84562 4.91894 4.95174 5.01769 5.10627 5.14109 5.17799 5.20623 5.24255 5.34065 5.39037 5.42245 5.47625 5.55960 5.58415 5.64273 5.71233 5.83003 5.93330 6.03806 6.06327 6.61717 6.71582 6.93647 7.29392 7.48419 8.87363 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032841 B = 0.003503 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.380498 B = 7992.355543 C = 8391.576654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.570 3.430 15 O -0.582 6.582 16 C -0.071 4.071 17 C -0.125 4.125 18 C -0.183 4.183 19 C -0.036 4.036 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.144 4.144 23 C 0.043 3.957 24 N -0.527 5.527 25 H 0.428 0.572 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.398 0.602 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 6.862 20.601 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.359 3.641 15 O -0.463 6.463 16 C -0.184 4.184 17 C -0.152 4.152 18 C -0.189 4.189 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.202 4.202 22 C -0.202 4.202 23 C -0.093 4.093 24 N -0.123 5.123 25 H 0.268 0.732 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.144 0.856 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.128 6.669 19.700 21.986 hybrid contribution 1.382 -0.500 -0.661 1.611 sum -5.746 6.169 19.039 20.822 Atomic orbital electron populations 1.21689 0.96883 0.99360 1.00347 1.21706 0.93900 0.98980 1.00581 1.18404 0.93970 0.89099 0.81047 0.97968 1.21520 0.91151 1.43543 1.02669 0.90913 1.25796 1.03345 0.94623 0.94628 1.70125 1.37538 1.43825 1.03917 0.85391 0.78986 0.79032 0.77131 1.19467 1.21401 1.18792 1.46118 1.14901 1.56371 1.17699 1.17577 0.82067 0.78097 0.86408 1.90777 1.52417 1.61884 1.41262 1.20256 0.95704 1.13526 0.88942 1.21262 0.95740 1.00707 0.97499 1.19580 0.97299 1.07902 0.94100 1.20029 0.93367 0.96089 0.97873 1.21072 0.95743 0.97242 0.97104 1.21845 0.99893 1.00391 0.98027 1.21823 0.97335 1.00325 1.00681 1.22420 0.92378 0.98900 0.95617 1.41978 1.15925 1.43992 1.10411 0.73240 0.93885 0.93227 0.95508 0.93374 0.92473 0.92549 0.76809 0.85572 0.89488 0.91940 0.93361 0.91339 0.93232 0.93072 0.92948 0.92688 0.91604 0.77410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.52 71.98 0.61 -5.18 16 2 C -0.11 -5.55 5.49 30.59 0.17 -5.38 16 3 C 0.28 14.39 2.11 44.25 0.09 14.49 16 4 H 0.00 0.15 7.55 -2.39 -0.02 0.13 16 5 C -0.55 -29.01 8.67 25.60 0.22 -28.79 16 6 H 0.07 3.54 7.73 -2.91 -0.02 3.52 16 7 C 0.02 0.90 5.19 84.65 0.44 1.34 16 8 N -0.92 -53.13 12.00 21.45 0.26 -52.88 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 13 N -0.70 -29.51 5.02 -450.07 -2.26 -31.77 16 14 C 0.57 24.24 6.37 86.45 0.55 24.79 16 15 O -0.58 -29.74 14.02 -4.34 -0.06 -29.80 16 16 C -0.07 -2.34 7.06 40.35 0.28 -2.06 16 17 C -0.12 -3.88 10.59 22.57 0.24 -3.64 16 18 C -0.18 -4.10 4.82 -20.12 -0.10 -4.20 16 19 C -0.04 -0.61 5.18 29.85 0.15 -0.45 16 20 C -0.09 -1.51 2.91 -10.79 -0.03 -1.54 16 21 C -0.14 -2.02 8.91 71.98 0.64 -1.38 16 22 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 23 C 0.04 0.79 10.42 83.48 0.87 1.66 16 24 N -0.53 -11.94 5.99 -183.62 -1.10 -13.04 16 25 H 0.43 7.47 8.19 -92.71 -0.76 6.71 16 26 H 0.04 1.95 5.64 -2.39 -0.01 1.94 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.03 1.33 7.86 -2.39 -0.02 1.31 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 3.12 6.64 -2.39 -0.02 3.10 16 31 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.40 13.71 7.66 -92.71 -0.71 13.00 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.80 6.41 -2.39 -0.02 0.79 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.66 346.85 3.21 -66.45 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.46 Total: 28.82 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 4.81 Total: -11.58 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -3.10 Total: -97.68 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.06 Total: -29.80 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -69.66 3.21 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412252083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.719 kcal (2) G-P(sol) polarization free energy of solvation -69.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds