Wall clock time and date at job start Tue Mar 31 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21701 * 120.00118 * 359.97438 * 14 13 3 16 16 C 1.46683 * 120.00371 * 180.02562 * 14 13 3 17 17 C 1.37874 * 126.23286 * 179.71143 * 16 14 13 18 18 C 1.39836 * 107.08286 * 179.84532 * 17 16 14 19 19 C 1.50693 * 126.06946 * 180.16081 * 18 17 16 20 20 C 1.52995 * 109.47094 * 270.28171 * 19 18 17 21 21 C 1.52998 * 109.47369 * 64.99454 * 20 19 18 22 22 C 1.53002 * 109.47283 * 184.99899 * 20 19 18 23 23 C 1.35451 * 107.86221 * 0.41441 * 18 17 16 24 24 N 1.35535 * 108.87612 * 359.74628 * 23 18 17 25 25 H 0.96993 * 125.67857 * 180.02562 * 24 23 18 26 26 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 28 28 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.08000 * 126.45949 * 0.02562 * 17 16 14 34 34 H 1.09005 * 109.47108 * 30.27396 * 19 18 17 35 35 H 1.09000 * 109.47699 * 150.28061 * 19 18 17 36 36 H 1.09007 * 109.47199 * 304.99856 * 20 19 18 37 37 H 1.08991 * 109.47535 * 300.00552 * 21 20 19 38 38 H 1.09007 * 109.47236 * 60.00776 * 21 20 19 39 39 H 1.09003 * 109.47489 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46986 * 59.99980 * 22 20 19 41 41 H 1.09003 * 109.47287 * 180.02562 * 22 20 19 42 42 H 1.08999 * 109.47002 * 299.99773 * 22 20 19 43 43 H 1.08000 * 125.55978 * 179.76006 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3421 2.6320 -0.4312 16 6 0.0471 3.3197 -2.6205 17 6 -1.1605 3.9324 -2.8798 18 6 -1.0997 4.4231 -4.1878 19 6 -2.1922 5.1723 -4.9061 20 6 -3.0975 4.1781 -5.6361 21 6 -3.8163 3.2964 -4.6130 22 6 -4.1308 4.9431 -6.4655 23 6 0.1135 4.1006 -4.6966 24 7 0.8199 3.4299 -3.7542 25 1 1.7203 3.0853 -3.8608 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 5.8763 0.4948 2.1200 32 1 2.2721 2.1230 -1.9977 33 1 -1.9950 4.0196 -2.1998 34 1 -2.7813 5.7370 -4.1834 35 1 -1.7487 5.8578 -5.6282 36 1 -2.4941 3.5528 -6.2943 37 1 -3.0802 2.7515 -4.0221 38 1 -4.4198 3.9216 -3.9548 39 1 -4.4615 2.5884 -5.1330 40 1 -3.6187 5.5711 -7.1945 41 1 -4.7760 4.2348 -6.9853 42 1 -4.7342 5.5683 -5.8074 43 1 0.4613 4.3393 -5.6908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412252087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:41 Heat of formation + Delta-G solvation = -36.205756 kcal Electronic energy + Delta-G solvation = -21811.935970 eV Core-core repulsion = 18663.154813 eV Total energy + Delta-G solvation = -3148.781157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27965 -40.33383 -37.19644 -37.09547 -34.46486 -33.42789 -32.16788 -30.53943 -29.40391 -27.87486 -27.03128 -24.86143 -23.88853 -22.02726 -21.30358 -20.98227 -20.42583 -19.47448 -18.48993 -17.51579 -16.80363 -16.46606 -16.01143 -15.64633 -15.39747 -15.15343 -14.92594 -14.55468 -14.48746 -14.11424 -14.03431 -13.73741 -13.64483 -13.51282 -13.02171 -12.97832 -12.80609 -12.75602 -12.44971 -12.27762 -11.89428 -11.73822 -11.58358 -11.44658 -11.37221 -11.28504 -10.95977 -10.87696 -9.91244 -9.66468 -8.99668 -8.41732 -6.47589 0.57964 1.24985 1.33550 1.43486 1.83730 2.23427 2.24661 2.42705 2.48245 2.94430 3.97195 4.09935 4.13905 4.19781 4.25783 4.28446 4.35269 4.42761 4.47665 4.58118 4.78128 4.87289 4.90563 4.94292 4.96227 5.06974 5.09953 5.13978 5.18884 5.21324 5.23360 5.33387 5.38134 5.40656 5.47626 5.56287 5.58482 5.63459 5.89795 6.01604 6.13567 6.52648 6.60066 6.82813 7.15285 7.35928 8.73283 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035553 B = 0.003740 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.357336 B = 7485.333364 C = 7960.967071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.258 1.258 11 H -0.292 1.292 12 H -0.261 1.261 13 N -0.699 5.699 14 C 0.575 3.425 15 O -0.576 6.576 16 C -0.075 4.075 17 C -0.113 4.113 18 C -0.184 4.184 19 C -0.037 4.037 20 C -0.087 4.087 21 C -0.149 4.149 22 C -0.145 4.145 23 C 0.041 3.959 24 N -0.529 5.529 25 H 0.427 0.573 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.400 0.600 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 5.931 -17.373 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.040 0.960 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.348 5.348 14 C 0.364 3.636 15 O -0.457 6.457 16 C -0.189 4.189 17 C -0.141 4.141 18 C -0.190 4.190 19 C -0.075 4.075 20 C -0.105 4.105 21 C -0.206 4.206 22 C -0.202 4.202 23 C -0.095 4.095 24 N -0.125 5.125 25 H 0.267 0.733 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.235 0.765 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.877 5.758 -16.552 22.988 hybrid contribution 0.819 -0.658 0.876 1.368 sum -14.057 5.101 -15.676 21.665 Atomic orbital electron populations 1.21764 0.95310 1.00597 1.01513 1.22200 0.95746 0.98377 1.01143 1.18806 0.93361 0.89676 0.83523 0.95955 1.21250 0.90131 1.38928 1.06973 0.92485 1.25525 0.95741 0.95800 0.99773 1.69964 1.10233 1.46083 1.30782 0.86060 0.79331 0.80047 0.78398 1.18359 1.21956 1.18578 1.45864 1.15317 1.56437 1.17150 1.17517 0.81701 0.77842 0.86533 1.90772 1.52599 1.61767 1.40589 1.20229 0.95728 1.13979 0.88926 1.21225 0.95384 1.00124 0.97340 1.19598 0.97223 1.07819 0.94388 1.20041 0.93229 0.96080 0.98101 1.21067 0.96421 0.96604 0.96458 1.21870 0.99945 0.99656 0.99140 1.21829 0.98582 1.00130 0.99645 1.22458 0.92383 0.98841 0.95852 1.42002 1.15843 1.44141 1.10528 0.73332 0.94396 0.93058 0.92133 0.91260 0.93589 0.91990 0.76532 0.85311 0.91882 0.89540 0.91221 0.93978 0.93103 0.92874 0.91676 0.92661 0.92800 0.77403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.14 -5.94 5.11 30.59 0.16 -5.79 16 3 C 0.25 11.97 1.83 44.25 0.08 12.05 16 4 H 0.02 1.21 6.63 -2.39 -0.02 1.19 16 5 C -0.53 -29.08 9.31 25.60 0.24 -28.85 16 6 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.79 5.45 84.66 0.46 2.25 16 8 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 9 Si 0.93 44.90 24.41 68.60 1.67 46.57 16 10 H -0.26 -11.62 6.84 99.48 0.68 -10.94 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.26 -12.56 6.52 99.48 0.65 -11.91 16 13 N -0.70 -27.79 5.02 -450.09 -2.26 -30.04 16 14 C 0.57 22.59 6.35 86.45 0.55 23.14 16 15 O -0.58 -26.64 14.01 -4.35 -0.06 -26.70 16 16 C -0.08 -2.33 7.06 40.35 0.28 -2.05 16 17 C -0.11 -3.25 9.24 22.57 0.21 -3.04 16 18 C -0.18 -3.88 4.79 -20.12 -0.10 -3.97 16 19 C -0.04 -0.58 5.18 29.84 0.15 -0.42 16 20 C -0.09 -1.29 2.91 -10.80 -0.03 -1.32 16 21 C -0.15 -2.75 8.91 71.98 0.64 -2.10 16 22 C -0.14 -1.69 9.19 71.98 0.66 -1.02 16 23 C 0.04 0.72 11.80 83.48 0.99 1.71 16 24 N -0.53 -11.56 5.99 -183.62 -1.10 -12.66 16 25 H 0.43 7.44 8.19 -92.71 -0.76 6.68 16 26 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 27 H 0.05 2.05 5.64 -2.39 -0.01 2.03 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.05 2.09 3.24 -2.39 -0.01 2.08 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.40 13.64 7.67 -92.71 -0.71 12.92 16 33 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.04 0.96 6.40 -2.39 -0.02 0.94 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -69.05 338.94 2.92 -66.12 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.54 Total: 26.28 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.91 Total: -14.18 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -3.06 Total: -98.10 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -69.05 2.92 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412252087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.919 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds