Wall clock time and date at job start Tue Mar 31 2020 00:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47071 * 2 1 4 4 H 1.08997 * 109.47226 * 55.00739 * 3 2 1 5 5 C 1.53010 * 109.47110 * 175.00495 * 3 2 1 6 6 N 1.46896 * 109.47207 * 186.24181 * 5 3 2 7 7 C 1.46907 * 110.99880 * 85.36307 * 6 5 3 8 8 C 1.50702 * 109.47204 * 286.95196 * 7 6 5 9 9 H 1.08000 * 120.00155 * 354.85206 * 8 7 6 10 10 C 1.37874 * 120.00147 * 174.84744 * 8 7 6 11 11 N 1.31518 * 119.99656 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00316 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46926 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47209 * 119.99987 * 12 10 8 15 15 H 1.48506 * 109.47188 * 240.00225 * 12 10 8 16 16 C 1.46899 * 111.00302 * 209.31746 * 6 5 3 17 17 C 1.50690 * 109.47318 * 169.99987 * 16 6 5 18 18 C 1.38233 * 119.61962 * 94.98228 * 17 16 6 19 19 C 1.38629 * 119.16206 * 179.79238 * 18 17 16 20 20 C 1.38675 * 118.41690 * 0.46687 * 19 18 17 21 21 C 1.38175 * 119.16811 * 359.50977 * 20 19 18 22 22 N 1.31849 * 119.62064 * 274.99957 * 17 16 6 23 23 O 1.42897 * 109.47568 * 295.00468 * 3 2 1 24 24 C 1.42898 * 114.00338 * 142.82976 * 23 3 2 25 25 H 1.08996 * 109.47080 * 59.99536 * 1 2 3 26 26 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46698 * 299.99209 * 1 2 3 28 28 H 1.09004 * 109.46698 * 240.00791 * 2 1 3 29 29 H 1.09001 * 109.47477 * 120.00682 * 2 1 3 30 30 H 1.08997 * 109.47012 * 66.24308 * 5 3 2 31 31 H 1.09000 * 109.46626 * 306.24022 * 5 3 2 32 32 H 1.09000 * 109.46951 * 46.95647 * 7 6 5 33 33 H 1.09002 * 109.46639 * 166.95333 * 7 6 5 34 34 H 0.97003 * 119.99627 * 179.97438 * 11 10 8 35 35 H 1.08995 * 109.46902 * 49.99545 * 16 6 5 36 36 H 1.09003 * 109.46839 * 290.00369 * 16 6 5 37 37 H 1.07999 * 120.41626 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.78677 * 180.23262 * 19 18 17 39 39 H 1.08001 * 120.41216 * 179.78755 * 20 19 18 40 40 H 1.07994 * 119.61953 * 180.25079 * 21 20 19 41 41 H 1.09007 * 109.46934 * 297.83278 * 24 23 3 42 42 H 1.09002 * 109.47112 * 57.83008 * 24 23 3 43 43 H 1.08995 * 109.47449 * 177.83489 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1256 6 7 4.0422 2.8254 0.2759 7 6 3.9971 3.2480 1.6821 8 6 2.5652 3.4783 2.0917 9 1 1.7756 3.4073 1.3583 10 6 2.2632 3.7798 3.4028 11 7 3.2247 3.8667 4.2958 12 14 0.4883 4.0646 3.9107 13 1 -0.3959 3.9106 2.7276 14 1 0.1051 3.0736 4.9480 15 1 0.3447 5.4369 4.4599 16 6 5.3948 2.9781 -0.2765 17 6 5.7535 4.4407 -0.3300 18 6 6.4680 5.0073 0.7089 19 6 6.7966 6.3527 0.6478 20 6 6.3840 7.0834 -0.4562 21 6 5.6729 6.4486 -1.4565 22 7 5.3819 5.1653 -1.3670 23 8 1.6619 2.0815 -1.2209 24 6 1.2993 3.4554 -1.0699 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.0037 1.0036 -0.7695 31 1 3.8582 0.8615 0.9988 32 1 4.4339 2.4707 2.3092 33 1 4.5625 4.1721 1.8021 34 1 3.0123 4.0791 5.2181 35 1 5.4259 2.5593 -1.2823 36 1 6.1079 2.4520 0.3582 37 1 6.7690 4.4088 1.5559 38 1 7.3573 6.8214 1.4430 39 1 6.6193 8.1345 -0.5352 40 1 5.3515 7.0097 -2.3214 41 1 0.4276 3.5318 -0.4200 42 1 2.1310 4.0043 -0.6282 43 1 1.0626 3.8782 -2.0463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412977276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:16 Heat of formation + Delta-G solvation = -5.766023 kcal Electronic energy + Delta-G solvation = -22832.775168 eV Core-core repulsion = 19685.313976 eV Total energy + Delta-G solvation = -3147.461192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82314 -38.10499 -35.83362 -32.97534 -32.72912 -32.03782 -31.22062 -28.16302 -27.60765 -25.62154 -24.76059 -23.23136 -22.71491 -21.78245 -20.32403 -19.96995 -16.58724 -16.43291 -16.10825 -15.67543 -15.24839 -14.73579 -14.65756 -14.55413 -14.02011 -13.49176 -13.34605 -13.05129 -12.93846 -12.82984 -12.51424 -12.17219 -11.97184 -11.66480 -11.58548 -11.30407 -11.08467 -10.80410 -10.71877 -10.49991 -10.48543 -10.44499 -10.32212 -9.55877 -9.39272 -9.03269 -8.91813 -8.68367 -8.56666 -8.38636 -7.18088 -6.08390 -4.08149 1.49725 1.69360 3.25079 3.33714 3.36815 4.12653 4.38045 4.66549 4.70852 4.95892 5.15072 5.20751 5.26482 5.41366 5.51179 5.60690 5.64689 5.71066 5.85612 5.90153 6.03946 6.09035 6.20264 6.21160 6.25418 6.31522 6.34685 6.40830 6.43225 6.51223 6.54258 6.56969 6.66474 6.88507 6.95247 7.07776 7.21761 7.28968 7.78264 8.05081 8.12122 8.20948 8.45176 8.50382 8.97910 9.55120 11.02010 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.007334 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.125427 B = 3817.038952 C = 5034.837228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.076 3.924 4 H 0.106 0.894 5 C 0.056 3.944 6 N -0.525 5.525 7 C 0.183 3.817 8 C -0.510 4.510 9 H 0.076 0.924 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.886 3.114 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.104 3.896 17 C 0.155 3.845 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.185 4.185 21 C 0.093 3.907 22 N -0.467 5.467 23 O -0.386 6.386 24 C 0.038 3.962 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.040 0.960 32 H -0.004 1.004 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -0.067 -7.816 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.018 3.982 4 H 0.123 0.877 5 C -0.073 4.073 6 N -0.250 5.250 7 C 0.058 3.942 8 C -0.548 4.548 9 H 0.094 0.906 10 C -0.144 4.144 11 N -0.535 5.535 12 Si 0.714 3.286 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.025 4.025 17 C 0.017 3.983 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.205 4.205 21 C -0.065 4.065 22 N -0.176 5.176 23 O -0.305 6.305 24 C -0.059 4.059 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.983 -0.230 -8.739 9.237 hybrid contribution 0.091 0.434 2.001 2.049 sum 3.074 0.204 -6.738 7.409 Atomic orbital electron populations 1.21683 0.96020 1.00588 1.02096 1.21616 0.96116 0.96629 1.01555 1.22632 0.93711 0.92579 0.89266 0.87665 1.22418 0.96359 0.89350 0.99155 1.62001 1.19138 1.21345 1.22480 1.19986 0.97908 0.95570 0.80699 1.21442 0.92833 1.46772 0.93735 0.90620 1.24964 0.97044 0.95659 0.96690 1.69960 1.31587 1.49184 1.02722 0.86617 0.85300 0.77916 0.78781 1.19531 1.20988 1.21007 1.20906 0.91806 0.89525 1.00226 1.21113 0.91590 0.96391 0.89219 1.22023 0.99922 0.96048 0.99448 1.21485 0.97564 0.94047 0.97312 1.22015 1.01644 1.00840 0.95989 1.22651 0.94896 0.90948 0.97963 1.67472 1.17962 1.06849 1.25325 1.87670 1.87241 1.24037 1.31582 1.22757 0.99792 0.83458 0.99883 0.92379 0.93530 0.92948 0.92237 0.91319 0.92636 0.94232 0.98628 0.94972 0.93054 0.90249 0.94455 0.85055 0.85377 0.85536 0.83407 0.95801 0.90541 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.81 37.16 0.36 -1.86 16 2 C -0.12 -1.97 5.64 -26.73 -0.15 -2.12 16 3 C 0.08 1.47 2.13 -26.73 -0.06 1.42 16 4 H 0.11 2.35 4.20 -51.93 -0.22 2.14 16 5 C 0.06 1.08 4.70 -3.82 -0.02 1.06 16 6 N -0.53 -11.02 2.96 -237.51 -0.70 -11.73 16 7 C 0.18 4.50 4.57 -4.97 -0.02 4.48 16 8 C -0.51 -13.42 7.67 -34.44 -0.26 -13.69 16 9 H 0.08 1.96 3.49 -52.49 -0.18 1.77 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 12 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.10 1.92 5.22 -4.98 -0.03 1.89 16 17 C 0.16 2.87 5.70 -82.59 -0.47 2.40 16 18 C -0.15 -2.65 8.02 -39.44 -0.32 -2.97 16 19 C -0.08 -1.16 10.18 -39.28 -0.40 -1.56 16 20 C -0.18 -2.56 10.11 -39.44 -0.40 -2.95 16 21 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 22 N -0.47 -8.54 10.27 -9.48 -0.10 -8.64 16 23 O -0.39 -7.70 9.85 -35.23 -0.35 -8.05 16 24 C 0.04 0.74 9.69 101.05 0.98 1.72 16 25 H 0.06 0.90 7.82 -51.93 -0.41 0.49 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.99 7.57 -51.93 -0.39 0.60 16 31 H 0.04 0.78 7.58 -51.93 -0.39 0.39 16 32 H 0.00 -0.11 7.71 -51.93 -0.40 -0.51 16 33 H 0.03 0.84 5.49 -51.93 -0.29 0.55 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.08 1.39 7.79 -51.93 -0.40 0.99 16 36 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 37 H 0.13 2.21 7.98 -52.49 -0.42 1.80 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 42 H 0.08 1.69 6.16 -51.93 -0.32 1.37 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -29.61 342.27 -8.12 -37.73 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.77 Total: 3.76 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.07 Total: -9.49 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.07 Total: -45.16 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.35 Total: -8.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.61 -8.12 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412977276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.961 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds