Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47071 * 2 1 4 4 H 1.08997 * 109.47226 * 55.00739 * 3 2 1 5 5 C 1.53010 * 109.47110 * 175.00495 * 3 2 1 6 6 N 1.46896 * 109.47207 * 186.24181 * 5 3 2 7 7 C 1.46907 * 110.99880 * 85.36307 * 6 5 3 8 8 C 1.50702 * 109.47204 * 286.95196 * 7 6 5 9 9 H 1.08000 * 120.00155 * 354.85206 * 8 7 6 10 10 C 1.37874 * 120.00147 * 174.84744 * 8 7 6 11 11 N 1.31518 * 119.99656 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00316 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46926 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47209 * 119.99987 * 12 10 8 15 15 H 1.48506 * 109.47188 * 240.00225 * 12 10 8 16 16 C 1.46899 * 111.00302 * 209.31746 * 6 5 3 17 17 C 1.50690 * 109.47318 * 169.99987 * 16 6 5 18 18 C 1.38233 * 119.61962 * 94.98228 * 17 16 6 19 19 C 1.38629 * 119.16206 * 179.79238 * 18 17 16 20 20 C 1.38675 * 118.41690 * 0.46687 * 19 18 17 21 21 C 1.38175 * 119.16811 * 359.50977 * 20 19 18 22 22 N 1.31849 * 119.62064 * 274.99957 * 17 16 6 23 23 O 1.42897 * 109.47568 * 295.00468 * 3 2 1 24 24 C 1.42898 * 114.00338 * 142.82976 * 23 3 2 25 25 H 1.08996 * 109.47080 * 59.99536 * 1 2 3 26 26 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46698 * 299.99209 * 1 2 3 28 28 H 1.09004 * 109.46698 * 240.00791 * 2 1 3 29 29 H 1.09001 * 109.47477 * 120.00682 * 2 1 3 30 30 H 1.08997 * 109.47012 * 66.24308 * 5 3 2 31 31 H 1.09000 * 109.46626 * 306.24022 * 5 3 2 32 32 H 1.09000 * 109.46951 * 46.95647 * 7 6 5 33 33 H 1.09002 * 109.46639 * 166.95333 * 7 6 5 34 34 H 0.97003 * 119.99627 * 179.97438 * 11 10 8 35 35 H 1.08995 * 109.46902 * 49.99545 * 16 6 5 36 36 H 1.09003 * 109.46839 * 290.00369 * 16 6 5 37 37 H 1.07999 * 120.41626 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.78677 * 180.23262 * 19 18 17 39 39 H 1.08001 * 120.41216 * 179.78755 * 20 19 18 40 40 H 1.07994 * 119.61953 * 180.25079 * 21 20 19 41 41 H 1.09007 * 109.46934 * 297.83278 * 24 23 3 42 42 H 1.09002 * 109.47112 * 57.83008 * 24 23 3 43 43 H 1.08995 * 109.47449 * 177.83489 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1256 6 7 4.0422 2.8254 0.2759 7 6 3.9971 3.2480 1.6821 8 6 2.5652 3.4783 2.0917 9 1 1.7756 3.4073 1.3583 10 6 2.2632 3.7798 3.4028 11 7 3.2247 3.8667 4.2958 12 14 0.4883 4.0646 3.9107 13 1 -0.3959 3.9106 2.7276 14 1 0.1051 3.0736 4.9480 15 1 0.3447 5.4369 4.4599 16 6 5.3948 2.9781 -0.2765 17 6 5.7535 4.4407 -0.3300 18 6 6.4680 5.0073 0.7089 19 6 6.7966 6.3527 0.6478 20 6 6.3840 7.0834 -0.4562 21 6 5.6729 6.4486 -1.4565 22 7 5.3819 5.1653 -1.3670 23 8 1.6619 2.0815 -1.2209 24 6 1.2993 3.4554 -1.0699 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 4.0037 1.0036 -0.7695 31 1 3.8582 0.8615 0.9988 32 1 4.4339 2.4707 2.3092 33 1 4.5625 4.1721 1.8021 34 1 3.0123 4.0791 5.2181 35 1 5.4259 2.5593 -1.2823 36 1 6.1079 2.4520 0.3582 37 1 6.7690 4.4088 1.5559 38 1 7.3573 6.8214 1.4430 39 1 6.6193 8.1345 -0.5352 40 1 5.3515 7.0097 -2.3214 41 1 0.4276 3.5318 -0.4200 42 1 2.1310 4.0043 -0.6282 43 1 1.0626 3.8782 -2.0463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412977276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = -23.465411 kcal Electronic energy + Delta-G solvation = -22833.542671 eV Core-core repulsion = 19685.313976 eV Total energy + Delta-G solvation = -3148.228695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10712 -39.66696 -37.44025 -34.71999 -34.35831 -33.30893 -32.56699 -29.81800 -29.26600 -27.20349 -26.35243 -24.68840 -24.18009 -23.14138 -21.81252 -21.61182 -18.52591 -17.69859 -17.63267 -17.04340 -16.59648 -16.49484 -16.30728 -16.10080 -15.54153 -15.06995 -14.75496 -14.46811 -14.36796 -14.04888 -13.94291 -13.86805 -13.70435 -13.15032 -13.10695 -12.89932 -12.63147 -12.55331 -12.36386 -12.28583 -11.97650 -11.88121 -11.75860 -11.37547 -10.78587 -10.71311 -10.45576 -10.34789 -10.20427 -9.82901 -8.87785 -8.16520 -6.21714 0.25692 0.47118 1.35526 1.38514 1.48609 2.38499 2.84101 3.14383 3.16294 3.42468 3.48306 3.91191 4.06789 4.13859 4.24973 4.31547 4.34390 4.40555 4.49419 4.51728 4.61444 4.67449 4.77226 4.78642 4.83043 4.84617 4.93240 5.02691 5.13046 5.18971 5.19777 5.24359 5.28778 5.30341 5.34551 5.38358 5.50778 5.76482 5.88369 6.11758 6.38504 6.56291 6.64226 6.92784 7.20181 7.45335 8.93993 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.007334 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.125427 B = 3817.038952 C = 5034.837228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.075 0.925 5 C 0.055 3.945 6 N -0.528 5.528 7 C 0.203 3.797 8 C -0.513 4.513 9 H 0.080 0.920 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.944 3.056 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.283 1.283 16 C 0.105 3.895 17 C 0.130 3.870 18 C -0.174 4.174 19 C -0.083 4.083 20 C -0.173 4.173 21 C 0.083 3.917 22 N -0.494 5.494 23 O -0.388 6.388 24 C 0.045 3.955 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.031 0.969 32 H -0.035 1.035 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.122 0.878 38 H 0.154 0.846 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.020 0.980 42 H 0.048 0.952 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 0.559 -9.077 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.092 0.908 5 C -0.074 4.074 6 N -0.252 5.252 7 C 0.077 3.923 8 C -0.551 4.551 9 H 0.098 0.902 10 C -0.190 4.190 11 N -0.571 5.571 12 Si 0.770 3.230 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.209 1.209 16 C -0.023 4.023 17 C -0.007 4.007 18 C -0.195 4.195 19 C -0.108 4.108 20 C -0.192 4.192 21 C -0.074 4.074 22 N -0.204 5.204 23 O -0.307 6.307 24 C -0.052 4.052 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.050 0.950 32 H -0.017 1.017 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.197 0.803 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.346 0.382 -10.017 10.295 hybrid contribution 0.360 0.300 2.316 2.363 sum 2.707 0.682 -7.701 8.191 Atomic orbital electron populations 1.21658 0.95031 1.02097 1.01256 1.21613 0.96977 0.94423 1.02581 1.22584 0.93372 0.94114 0.87958 0.90768 1.22480 0.96763 0.88541 0.99566 1.61949 1.20976 1.22308 1.19939 1.19611 0.96596 0.93782 0.82315 1.21795 0.93798 1.45603 0.93908 0.90183 1.25703 1.00619 0.95751 0.96890 1.70077 1.33449 1.50568 1.02988 0.85708 0.81080 0.77703 0.78558 1.18753 1.20531 1.20881 1.20933 0.90518 0.90541 1.00347 1.21066 0.93053 0.96402 0.90216 1.22081 1.00829 0.97458 0.99125 1.21878 0.97294 0.93149 0.98519 1.22452 0.99693 1.02566 0.94539 1.23277 0.94539 0.90194 0.99402 1.67435 1.18922 1.08477 1.25545 1.87664 1.87228 1.24082 1.31722 1.22672 0.98408 0.83156 1.00968 0.92777 0.90871 0.94190 0.90687 0.90758 0.90773 0.95030 1.01726 0.96702 0.93086 0.89402 0.94071 0.86028 0.82802 0.81488 0.80308 0.96164 0.93295 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 9.81 71.98 0.71 -3.38 16 2 C -0.12 -3.67 5.64 30.59 0.17 -3.49 16 3 C 0.08 2.99 2.13 30.60 0.07 3.06 16 4 H 0.07 3.35 4.20 -2.39 -0.01 3.34 16 5 C 0.05 2.14 4.70 86.31 0.41 2.54 16 6 N -0.53 -22.64 2.96 -905.36 -2.68 -25.32 16 7 C 0.20 10.35 4.57 85.56 0.39 10.74 16 8 C -0.51 -27.63 7.67 25.60 0.20 -27.43 16 9 H 0.08 4.20 3.49 -2.91 -0.01 4.19 16 10 C 0.01 0.46 5.46 84.65 0.46 0.93 16 11 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 12 Si 0.94 43.59 29.54 68.60 2.03 45.61 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 C 0.10 3.96 5.22 85.55 0.45 4.41 16 17 C 0.13 4.89 5.70 42.55 0.24 5.13 16 18 C -0.17 -6.12 8.02 22.36 0.18 -5.94 16 19 C -0.08 -2.36 10.18 22.47 0.23 -2.13 16 20 C -0.17 -4.32 10.11 22.36 0.23 -4.09 16 21 C 0.08 2.36 11.18 84.67 0.95 3.31 16 22 N -0.49 -17.83 10.27 -183.90 -1.89 -19.72 16 23 O -0.39 -15.09 9.85 -148.98 -1.47 -16.55 16 24 C 0.04 1.72 9.69 113.37 1.10 2.81 16 25 H 0.05 1.57 7.82 -2.39 -0.02 1.55 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.59 7.57 -2.39 -0.02 2.58 16 31 H 0.03 1.28 7.58 -2.39 -0.02 1.26 16 32 H -0.03 -1.96 7.71 -2.39 -0.02 -1.98 16 33 H 0.01 0.81 5.49 -2.39 -0.01 0.80 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.09 3.10 7.79 -2.39 -0.02 3.08 16 36 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 37 H 0.12 4.34 7.98 -2.91 -0.02 4.32 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.02 0.77 7.94 -2.38 -0.02 0.75 16 42 H 0.05 2.16 6.16 -2.39 -0.01 2.15 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -64.65 342.27 3.02 -61.63 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.98 Total: 21.90 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 5.77 Total: -13.54 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -4.29 Total: -99.05 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.47 Total: -16.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.65 3.02 -61.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412977276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.161 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds