Wall clock time and date at job start Tue Mar 31 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46725 * 2 1 4 4 H 1.09000 * 109.47349 * 305.27026 * 3 2 1 5 5 C 1.52996 * 109.46999 * 185.27076 * 3 2 1 6 6 N 1.46897 * 109.47334 * 173.72792 * 5 3 2 7 7 C 1.46906 * 110.99882 * 76.50954 * 6 5 3 8 8 C 1.50695 * 109.47305 * 57.60382 * 7 6 5 9 9 H 1.07997 * 119.99890 * 4.93724 * 8 7 6 10 10 C 1.37880 * 119.99944 * 184.93619 * 8 7 6 11 11 N 1.31513 * 120.00128 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99580 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47132 * 60.00287 * 12 10 8 14 14 H 1.48507 * 109.46711 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47582 * 299.99785 * 12 10 8 16 16 C 1.46898 * 111.00171 * 200.45905 * 6 5 3 17 17 C 1.50707 * 109.46981 * 164.11218 * 16 6 5 18 18 C 1.38225 * 119.61897 * 95.00125 * 17 16 6 19 19 C 1.38629 * 119.16036 * 179.97438 * 18 17 16 20 20 C 1.38675 * 118.42094 * 359.97438 * 19 18 17 21 21 C 1.38183 * 119.16138 * 0.02562 * 20 19 18 22 22 N 1.31854 * 119.61519 * 274.72407 * 17 16 6 23 23 O 1.42895 * 109.47306 * 65.27151 * 3 2 1 24 24 C 1.42906 * 114.00011 * 258.61004 * 23 3 2 25 25 H 1.09002 * 109.47497 * 55.22923 * 1 2 3 26 26 H 1.09000 * 109.47101 * 295.22016 * 1 2 3 27 27 H 1.09005 * 109.46689 * 175.22570 * 1 2 3 28 28 H 1.08994 * 109.47249 * 119.99821 * 2 1 3 29 29 H 1.08999 * 109.47088 * 240.00390 * 2 1 3 30 30 H 1.08999 * 109.47514 * 293.72769 * 5 3 2 31 31 H 1.09003 * 109.47270 * 53.73159 * 5 3 2 32 32 H 1.09003 * 109.47054 * 177.61116 * 7 6 5 33 33 H 1.09004 * 109.46537 * 297.60460 * 7 6 5 34 34 H 0.96995 * 119.99701 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47475 * 284.11005 * 16 6 5 36 36 H 1.08998 * 109.47059 * 44.11652 * 16 6 5 37 37 H 1.08001 * 120.42027 * 359.95448 * 18 17 16 38 38 H 1.08000 * 120.78992 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.41900 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.61320 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46827 * 304.78221 * 24 23 3 42 42 H 1.09000 * 109.47396 * 64.78255 * 24 23 3 43 43 H 1.08995 * 109.46990 * 184.78758 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6015 1.9829 -0.8390 5 6 3.5641 1.4447 -0.1325 6 7 4.0406 2.8260 -0.2834 7 6 4.0250 3.5319 1.0048 8 6 4.8751 2.7830 1.9984 9 1 5.4403 1.9187 1.6824 10 6 4.9312 3.2011 3.3111 11 7 4.2434 4.2539 3.6959 12 14 5.9856 2.2730 4.5426 13 1 7.4022 2.2959 4.0978 14 1 5.8750 2.9194 5.8750 15 1 5.5180 0.8666 4.6339 16 6 5.3804 2.8579 -0.8850 17 6 5.6754 4.2502 -1.3806 18 6 6.3745 5.1287 -0.5742 19 6 6.6411 6.4069 -1.0398 20 6 6.1931 6.7552 -2.3051 21 6 5.5002 5.8234 -3.0543 22 7 5.2685 4.6145 -2.5807 23 8 1.6673 2.0795 1.2237 24 6 0.5347 2.9432 1.1080 25 1 -0.3634 0.5861 -0.8442 26 1 -0.3633 0.4379 0.9297 27 1 -0.3633 -1.0242 -0.0855 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 4.0071 1.0030 0.7601 31 1 3.8536 0.8629 -1.0077 32 1 4.4222 4.5384 0.8724 33 1 3.0012 3.5911 1.3742 34 1 4.2826 4.5478 4.6194 35 1 6.1212 2.5738 -0.1375 36 1 5.4204 2.1589 -1.7203 37 1 6.7085 4.8232 0.4064 38 1 7.1855 7.1144 -0.4320 39 1 6.3832 7.7423 -2.7001 40 1 5.1476 6.0870 -4.0404 41 1 0.7187 3.6811 0.3271 42 1 -0.3463 2.3548 0.8515 43 1 0.3678 3.4525 2.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412977277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:19 Heat of formation + Delta-G solvation = -8.248447 kcal Electronic energy + Delta-G solvation = -22660.678141 eV Core-core repulsion = 19513.109304 eV Total energy + Delta-G solvation = -3147.568838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.71534 -38.21926 -35.95879 -32.97340 -32.44382 -31.92745 -31.15768 -28.52107 -27.04926 -25.76283 -24.58082 -23.17538 -22.85509 -21.81258 -20.46219 -19.65602 -16.75586 -16.26162 -15.96148 -15.74392 -15.28704 -14.98813 -14.58598 -14.35430 -13.97748 -13.55525 -13.45037 -12.95824 -12.88064 -12.72633 -12.63429 -12.21930 -11.93606 -11.54570 -11.36208 -11.06662 -10.93890 -10.87275 -10.77304 -10.54429 -10.51322 -10.20430 -10.05751 -9.77591 -9.49932 -9.38551 -8.93855 -8.69692 -8.46572 -8.20115 -7.07475 -5.90492 -3.95990 1.58682 1.76649 3.33051 3.38352 3.40857 4.22453 4.48845 4.54857 4.79906 5.03683 5.20890 5.30398 5.40846 5.43053 5.46552 5.49392 5.60840 5.68206 5.80724 5.90859 5.95822 6.01215 6.08212 6.16160 6.16393 6.20382 6.31368 6.32327 6.35643 6.45627 6.49203 6.60840 6.64698 6.72203 6.88762 7.18904 7.40375 7.71600 8.03743 8.09021 8.16694 8.41325 8.42976 8.53704 9.12753 9.67386 11.15050 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.007625 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.114128 B = 3671.409208 C = 5385.089907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.100 3.900 4 H 0.058 0.942 5 C 0.056 3.944 6 N -0.532 5.532 7 C 0.177 3.823 8 C -0.535 4.535 9 H 0.051 0.949 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.881 3.119 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.104 3.896 17 C 0.157 3.843 18 C -0.147 4.147 19 C -0.082 4.082 20 C -0.188 4.188 21 C 0.087 3.913 22 N -0.475 5.475 23 O -0.351 6.351 24 C 0.035 3.965 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.259 0.741 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.037 0.963 42 H 0.028 0.972 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -0.844 -9.774 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.041 3.959 4 H 0.076 0.924 5 C -0.072 4.072 6 N -0.256 5.256 7 C 0.052 3.948 8 C -0.574 4.574 9 H 0.069 0.931 10 C -0.133 4.133 11 N -0.527 5.527 12 Si 0.709 3.291 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.204 1.204 16 C -0.025 4.025 17 C 0.019 3.981 18 C -0.167 4.167 19 C -0.108 4.108 20 C -0.208 4.208 21 C -0.070 4.070 22 N -0.185 5.185 23 O -0.269 6.269 24 C -0.062 4.062 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.164 0.836 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.267 -1.118 -10.270 10.577 hybrid contribution 1.428 -0.032 1.746 2.256 sum -0.840 -1.149 -8.524 8.642 Atomic orbital electron populations 1.21806 0.96276 1.00927 1.01736 1.21972 0.95824 0.97949 1.02214 1.22085 0.95099 0.91325 0.87345 0.92434 1.22162 0.93702 0.90866 1.00507 1.62469 1.20782 1.13972 1.28396 1.20086 0.99458 0.92793 0.82476 1.21561 1.27916 1.13171 0.94795 0.93078 1.24842 0.95496 0.94907 0.98032 1.69929 1.41126 1.24549 1.17106 0.86854 0.80915 0.80386 0.80958 1.20576 1.21432 1.20388 1.20860 0.93342 0.90470 0.97825 1.21246 0.91266 0.96711 0.88878 1.22205 0.99225 0.94073 1.01219 1.21536 0.97654 0.96315 0.95311 1.21993 1.01883 1.00815 0.96145 1.22606 0.95712 0.89277 0.99438 1.67484 1.18240 1.18110 1.14649 1.88174 1.46842 1.60874 1.30962 1.22728 0.88276 0.93235 1.01998 0.93239 0.92256 0.93266 0.91223 0.91712 0.91888 0.92294 0.96295 0.91740 0.93125 0.92171 0.91418 0.84104 0.85464 0.85716 0.83639 0.94461 0.95325 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.91 37.16 0.33 -1.61 16 2 C -0.14 -2.09 5.64 -26.73 -0.15 -2.24 16 3 C 0.10 1.80 2.48 -26.73 -0.07 1.73 16 4 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 5 C 0.06 1.09 4.64 -3.83 -0.02 1.08 16 6 N -0.53 -11.44 4.58 -237.51 -1.09 -12.53 16 7 C 0.18 4.47 4.65 -4.97 -0.02 4.44 16 8 C -0.54 -14.28 7.17 -34.44 -0.25 -14.53 16 9 H 0.05 1.35 6.09 -52.49 -0.32 1.03 16 10 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 11 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 12 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.10 2.05 5.15 -4.97 -0.03 2.03 16 17 C 0.16 3.05 5.84 -82.58 -0.48 2.57 16 18 C -0.15 -2.73 8.33 -39.44 -0.33 -3.06 16 19 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 20 C -0.19 -2.66 10.11 -39.44 -0.40 -3.05 16 21 C 0.09 1.33 11.18 -17.55 -0.20 1.13 16 22 N -0.48 -8.79 10.27 -9.47 -0.10 -8.89 16 23 O -0.35 -7.28 7.63 -35.23 -0.27 -7.55 16 24 C 0.03 0.61 9.92 101.05 1.00 1.61 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.39 6.03 -51.93 -0.31 1.07 16 31 H 0.06 1.00 7.63 -51.93 -0.40 0.61 16 32 H 0.02 0.52 6.27 -51.93 -0.33 0.19 16 33 H 0.06 1.77 5.19 -51.93 -0.27 1.50 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 35 H 0.06 1.25 6.45 -51.93 -0.33 0.91 16 36 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 37 H 0.14 2.79 8.06 -52.49 -0.42 2.36 16 38 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 42 H 0.03 0.42 6.03 -51.93 -0.31 0.11 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -30.41 341.09 -8.46 -38.87 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.76 Total: 3.45 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.10 Total: -9.77 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.45 Total: -46.49 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.27 Total: -7.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.41 -8.46 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412977277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.624 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds