Wall clock time and date at job start Tue Mar 31 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46725 * 2 1 4 4 H 1.09000 * 109.47349 * 305.27026 * 3 2 1 5 5 C 1.52996 * 109.46999 * 185.27076 * 3 2 1 6 6 N 1.46897 * 109.47334 * 173.72792 * 5 3 2 7 7 C 1.46906 * 110.99882 * 76.50954 * 6 5 3 8 8 C 1.50695 * 109.47305 * 57.60382 * 7 6 5 9 9 H 1.07997 * 119.99890 * 4.93724 * 8 7 6 10 10 C 1.37880 * 119.99944 * 184.93619 * 8 7 6 11 11 N 1.31513 * 120.00128 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99580 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47132 * 60.00287 * 12 10 8 14 14 H 1.48507 * 109.46711 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47582 * 299.99785 * 12 10 8 16 16 C 1.46898 * 111.00171 * 200.45905 * 6 5 3 17 17 C 1.50707 * 109.46981 * 164.11218 * 16 6 5 18 18 C 1.38225 * 119.61897 * 95.00125 * 17 16 6 19 19 C 1.38629 * 119.16036 * 179.97438 * 18 17 16 20 20 C 1.38675 * 118.42094 * 359.97438 * 19 18 17 21 21 C 1.38183 * 119.16138 * 0.02562 * 20 19 18 22 22 N 1.31854 * 119.61519 * 274.72407 * 17 16 6 23 23 O 1.42895 * 109.47306 * 65.27151 * 3 2 1 24 24 C 1.42906 * 114.00011 * 258.61004 * 23 3 2 25 25 H 1.09002 * 109.47497 * 55.22923 * 1 2 3 26 26 H 1.09000 * 109.47101 * 295.22016 * 1 2 3 27 27 H 1.09005 * 109.46689 * 175.22570 * 1 2 3 28 28 H 1.08994 * 109.47249 * 119.99821 * 2 1 3 29 29 H 1.08999 * 109.47088 * 240.00390 * 2 1 3 30 30 H 1.08999 * 109.47514 * 293.72769 * 5 3 2 31 31 H 1.09003 * 109.47270 * 53.73159 * 5 3 2 32 32 H 1.09003 * 109.47054 * 177.61116 * 7 6 5 33 33 H 1.09004 * 109.46537 * 297.60460 * 7 6 5 34 34 H 0.96995 * 119.99701 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47475 * 284.11005 * 16 6 5 36 36 H 1.08998 * 109.47059 * 44.11652 * 16 6 5 37 37 H 1.08001 * 120.42027 * 359.95448 * 18 17 16 38 38 H 1.08000 * 120.78992 * 180.02562 * 19 18 17 39 39 H 1.08003 * 120.41900 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.61320 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.46827 * 304.78221 * 24 23 3 42 42 H 1.09000 * 109.47396 * 64.78255 * 24 23 3 43 43 H 1.08995 * 109.46990 * 184.78758 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6015 1.9829 -0.8390 5 6 3.5641 1.4447 -0.1325 6 7 4.0406 2.8260 -0.2834 7 6 4.0250 3.5319 1.0048 8 6 4.8751 2.7830 1.9984 9 1 5.4403 1.9187 1.6824 10 6 4.9312 3.2011 3.3111 11 7 4.2434 4.2539 3.6959 12 14 5.9856 2.2730 4.5426 13 1 7.4022 2.2959 4.0978 14 1 5.8750 2.9194 5.8750 15 1 5.5180 0.8666 4.6339 16 6 5.3804 2.8579 -0.8850 17 6 5.6754 4.2502 -1.3806 18 6 6.3745 5.1287 -0.5742 19 6 6.6411 6.4069 -1.0398 20 6 6.1931 6.7552 -2.3051 21 6 5.5002 5.8234 -3.0543 22 7 5.2685 4.6145 -2.5807 23 8 1.6673 2.0795 1.2237 24 6 0.5347 2.9432 1.1080 25 1 -0.3634 0.5861 -0.8442 26 1 -0.3633 0.4379 0.9297 27 1 -0.3633 -1.0242 -0.0855 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 4.0071 1.0030 0.7601 31 1 3.8536 0.8629 -1.0077 32 1 4.4222 4.5384 0.8724 33 1 3.0012 3.5911 1.3742 34 1 4.2826 4.5478 4.6194 35 1 6.1212 2.5738 -0.1375 36 1 5.4204 2.1589 -1.7203 37 1 6.7085 4.8232 0.4064 38 1 7.1855 7.1144 -0.4320 39 1 6.3832 7.7423 -2.7001 40 1 5.1476 6.0870 -4.0404 41 1 0.7187 3.6811 0.3271 42 1 -0.3463 2.3548 0.8515 43 1 0.3678 3.4525 2.0570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412977277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:18 Heat of formation + Delta-G solvation = -27.893843 kcal Electronic energy + Delta-G solvation = -22661.530030 eV Core-core repulsion = 19513.109304 eV Total energy + Delta-G solvation = -3148.420726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05627 -39.71777 -37.60068 -34.58960 -34.14226 -33.28178 -32.52599 -29.99726 -28.87598 -27.23318 -26.24248 -24.76676 -24.20462 -23.15008 -21.80898 -21.39506 -18.62545 -17.66706 -17.45442 -17.13112 -16.81216 -16.57819 -16.25247 -15.84029 -15.49600 -15.25205 -14.76822 -14.39314 -14.24979 -14.14096 -13.94443 -13.87070 -13.27927 -13.02131 -12.84525 -12.80597 -12.60486 -12.45669 -12.28483 -12.23799 -11.97891 -11.85634 -11.71363 -11.52117 -11.36086 -10.70106 -10.51014 -10.27084 -10.00155 -9.80295 -8.89369 -8.01846 -6.15336 0.29262 0.48121 1.37331 1.39109 1.45420 2.43574 2.88412 3.13287 3.24761 3.47894 3.60220 4.00142 4.09221 4.15842 4.21787 4.31014 4.32204 4.36066 4.52474 4.53781 4.60429 4.64357 4.67564 4.77134 4.87074 4.91452 4.94323 4.98995 5.05495 5.13439 5.20362 5.30947 5.33749 5.39813 5.44641 5.47200 5.58853 5.91843 5.98775 6.20889 6.37744 6.58223 6.67138 7.03464 7.21015 7.51256 9.00706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.007625 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.114128 B = 3671.409208 C = 5385.089907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.100 3.900 4 H 0.061 0.939 5 C 0.055 3.945 6 N -0.532 5.532 7 C 0.199 3.801 8 C -0.532 4.532 9 H 0.048 0.952 10 C 0.018 3.982 11 N -0.922 5.922 12 Si 0.941 3.059 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.107 3.893 17 C 0.134 3.866 18 C -0.172 4.172 19 C -0.085 4.085 20 C -0.173 4.173 21 C 0.083 3.917 22 N -0.496 5.496 23 O -0.387 6.387 24 C 0.037 3.963 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.087 0.913 32 H -0.008 1.008 33 H 0.042 0.958 34 H 0.258 0.742 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.184 0.816 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -0.848 -11.615 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.042 3.958 4 H 0.079 0.921 5 C -0.073 4.073 6 N -0.256 5.256 7 C 0.073 3.927 8 C -0.571 4.571 9 H 0.067 0.933 10 C -0.180 4.180 11 N -0.562 5.562 12 Si 0.767 3.233 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.021 4.021 17 C -0.004 4.004 18 C -0.193 4.193 19 C -0.110 4.110 20 C -0.192 4.192 21 C -0.075 4.075 22 N -0.206 5.206 23 O -0.306 6.306 24 C -0.059 4.059 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.010 0.990 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.201 0.799 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.290 -1.141 -12.122 12.389 hybrid contribution 1.453 0.045 2.194 2.631 sum -0.838 -1.096 -9.928 10.023 Atomic orbital electron populations 1.21769 0.94596 1.02420 1.01538 1.21920 0.97276 0.95488 1.02629 1.22202 0.93908 0.93221 0.86498 0.92103 1.22286 0.94943 0.89758 1.00352 1.62424 1.21989 1.14986 1.26154 1.19639 0.97420 0.91780 0.83911 1.21770 1.27404 1.12727 0.95231 0.93344 1.25567 0.96799 0.95770 0.99905 1.70055 1.42752 1.26054 1.17351 0.85884 0.79660 0.79019 0.78705 1.19665 1.21185 1.20180 1.20820 0.91763 0.91928 0.97596 1.21093 0.92787 0.96613 0.89880 1.22100 1.00833 0.95909 1.00435 1.21879 0.97375 0.95308 0.96482 1.22447 0.99637 1.02327 0.94804 1.23320 0.94925 0.88310 1.00899 1.67456 1.18971 1.20059 1.14148 1.88111 1.48229 1.61589 1.32662 1.22756 0.88629 0.93231 1.01315 0.92227 0.93426 0.91143 0.92592 0.89440 0.94792 0.89477 0.99030 0.94003 0.93269 0.94106 0.89784 0.86798 0.83110 0.81301 0.79917 0.95097 0.92183 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.91 71.98 0.64 -2.81 16 2 C -0.13 -3.80 5.64 30.59 0.17 -3.63 16 3 C 0.10 3.56 2.48 30.59 0.08 3.64 16 4 H 0.06 2.11 7.61 -2.39 -0.02 2.09 16 5 C 0.05 2.16 4.64 86.30 0.40 2.56 16 6 N -0.53 -23.48 4.58 -905.36 -4.15 -27.62 16 7 C 0.20 10.48 4.65 85.55 0.40 10.88 16 8 C -0.53 -29.47 7.17 25.60 0.18 -29.29 16 9 H 0.05 2.66 6.09 -2.91 -0.02 2.64 16 10 C 0.02 1.05 5.46 84.66 0.46 1.51 16 11 N -0.92 -55.35 13.29 21.45 0.28 -55.07 16 12 Si 0.94 44.88 29.54 68.60 2.03 46.91 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 C 0.11 4.37 5.15 85.56 0.44 4.81 16 17 C 0.13 5.26 5.84 42.55 0.25 5.51 16 18 C -0.17 -6.60 8.33 22.36 0.19 -6.42 16 19 C -0.08 -2.55 10.18 22.47 0.23 -2.32 16 20 C -0.17 -4.31 10.11 22.36 0.23 -4.09 16 21 C 0.08 2.30 11.18 84.67 0.95 3.25 16 22 N -0.50 -17.86 10.27 -183.88 -1.89 -19.75 16 23 O -0.39 -16.44 7.63 -148.98 -1.14 -17.57 16 24 C 0.04 1.32 9.92 113.37 1.13 2.45 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.23 6.54 -2.39 -0.02 1.21 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.03 1.53 6.03 -2.39 -0.01 1.52 16 31 H 0.09 2.88 7.63 -2.39 -0.02 2.86 16 32 H -0.01 -0.48 6.27 -2.39 -0.01 -0.50 16 33 H 0.04 2.41 5.19 -2.38 -0.01 2.40 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.04 1.79 6.45 -2.39 -0.02 1.77 16 36 H 0.08 3.05 7.68 -2.39 -0.02 3.04 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.03 1.10 8.02 -2.38 -0.02 1.08 16 42 H 0.06 1.71 6.03 -2.39 -0.01 1.70 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -68.21 341.09 1.85 -66.36 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.98 Total: 20.69 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.74 Total: -13.94 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -5.75 Total: -102.44 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.14 Total: -17.57 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.21 1.85 -66.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412977277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.462 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds