Wall clock time and date at job start Tue Mar 31 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47459 * 2 1 4 4 H 1.09005 * 109.46753 * 306.45024 * 3 2 1 5 5 C 1.52996 * 109.47649 * 186.44830 * 3 2 1 6 6 C 1.53000 * 109.47253 * 64.99591 * 5 3 2 7 7 C 1.53877 * 110.03543 * 185.00615 * 6 5 3 8 8 C 1.54263 * 106.63578 * 240.69112 * 7 6 5 9 9 C 1.54959 * 104.16342 * 336.44051 * 8 7 6 10 10 C 1.54266 * 110.03307 * 67.83480 * 6 5 3 11 11 C 1.50700 * 109.47196 * 66.44423 * 3 2 1 12 12 O 1.21286 * 120.00145 * 35.44287 * 11 3 2 13 13 N 1.34775 * 120.00144 * 215.44073 * 11 3 2 14 14 C 1.37096 * 120.00217 * 183.86481 * 13 11 3 15 15 H 1.07997 * 120.00122 * 14.47239 * 14 13 11 16 16 C 1.38953 * 120.00208 * 194.47708 * 14 13 11 17 17 N 1.31415 * 119.99844 * 20.43118 * 16 14 13 18 18 Si 1.86802 * 119.99880 * 200.43998 * 16 14 13 19 19 H 1.48500 * 109.47103 * 89.99738 * 18 16 14 20 20 H 1.48506 * 109.46754 * 209.99708 * 18 16 14 21 21 H 1.48495 * 109.46863 * 329.99339 * 18 16 14 22 22 C 1.46509 * 119.99873 * 3.86843 * 13 11 3 23 23 C 1.47198 * 109.47142 * 83.98433 * 22 13 11 24 24 N 4.73041 * 56.32799 * 345.23379 * 2 1 3 25 25 H 1.08999 * 109.47335 * 63.44618 * 1 2 3 26 26 H 1.09001 * 109.47403 * 183.44427 * 1 2 3 27 27 H 1.09003 * 109.47157 * 303.44345 * 1 2 3 28 28 H 1.09003 * 109.47009 * 239.99200 * 2 1 3 29 29 H 1.09000 * 109.47194 * 120.00147 * 2 1 3 30 30 H 1.09004 * 109.47101 * 305.00049 * 5 3 2 31 31 H 1.08992 * 109.47511 * 184.99718 * 5 3 2 32 32 H 1.09005 * 110.05854 * 306.42034 * 6 5 3 33 33 H 1.09004 * 110.02909 * 359.97438 * 7 6 5 34 34 H 1.09000 * 110.03171 * 121.38136 * 7 6 5 35 35 H 1.09003 * 110.48979 * 95.09461 * 8 7 6 36 36 H 1.09002 * 110.48619 * 217.72872 * 8 7 6 37 37 H 1.09001 * 110.72365 * 279.57451 * 9 8 7 38 38 H 1.09005 * 110.92102 * 156.29506 * 9 8 7 39 39 H 1.09000 * 110.48874 * 261.57733 * 10 6 5 40 40 H 1.09000 * 110.48489 * 24.08208 * 10 6 5 41 41 H 0.96996 * 119.99331 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.46867 * 203.97905 * 22 13 11 43 43 H 1.08997 * 109.47015 * 323.97894 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5855 1.9885 -0.8267 5 6 3.5614 1.4455 -0.1620 6 6 3.9290 0.8862 -1.5378 7 6 5.4576 0.7665 -1.6670 8 6 5.8731 1.6690 -2.8471 9 6 4.5900 1.7813 -3.7087 10 6 3.4680 1.8580 -2.6437 11 6 1.6722 2.1053 1.3024 12 8 1.6741 1.4633 2.3314 13 7 1.3411 3.4116 1.3238 14 6 1.0836 4.0341 2.5178 15 1 1.3667 3.5601 3.4460 16 6 0.4582 5.2748 2.5339 17 7 -0.2377 5.6734 1.4928 18 14 0.6069 6.3763 4.0352 19 1 1.7956 7.2544 3.8891 20 1 -0.6141 7.2125 4.1585 21 1 0.7575 5.5377 5.2514 22 6 1.2563 4.1664 0.0709 23 6 -0.0695 3.9634 -0.5354 24 7 -1.0927 3.8067 -1.0034 25 1 -0.3634 0.4594 -0.9192 26 1 -0.3634 -1.0258 0.0617 27 1 -0.3633 0.5664 0.8575 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0107 0.8257 0.6140 31 1 3.9342 2.4658 -0.0732 32 1 3.4647 -0.0896 -1.6810 33 1 5.9376 1.1073 -0.7497 34 1 5.7351 -0.2675 -1.8719 35 1 6.1779 2.6516 -2.4870 36 1 6.6774 1.2046 -3.4178 37 1 4.4679 0.8980 -4.3356 38 1 4.6076 2.6856 -4.3170 39 1 2.5177 1.5317 -3.0665 40 1 3.3814 2.8706 -2.2499 41 1 -0.6739 6.5396 1.5039 42 1 1.4040 5.2269 0.2750 43 1 2.0273 3.8178 -0.6161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413304186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:38 Heat of formation + Delta-G solvation = -45.840256 kcal Electronic energy + Delta-G solvation = -22894.966912 eV Core-core repulsion = 19745.767971 eV Total energy + Delta-G solvation = -3149.198941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12020 -39.16709 -37.67699 -36.35499 -35.62605 -33.66754 -31.98254 -29.54844 -29.24424 -28.55733 -26.56600 -24.31403 -23.33063 -21.45138 -20.41021 -19.91253 -19.67109 -18.36813 -17.94062 -16.79655 -16.56680 -16.01873 -15.83902 -15.34802 -15.11772 -14.83146 -14.70986 -14.42556 -14.22127 -14.03343 -13.73542 -13.45262 -13.31431 -13.08478 -12.95444 -12.90055 -12.36179 -12.31990 -12.18312 -12.11593 -12.04954 -11.82087 -11.77352 -11.66076 -11.43228 -11.37086 -11.25170 -11.08859 -10.99304 -10.20972 -9.92895 -8.38958 -5.94253 1.39555 1.46897 1.57048 1.81461 2.05605 2.24240 2.34791 2.98900 3.13375 3.55315 3.73963 3.77434 3.86759 4.00310 4.10987 4.21202 4.32515 4.44609 4.55620 4.63346 4.64315 4.72274 4.78181 4.79131 4.86579 4.93144 4.95237 5.03982 5.07555 5.10651 5.23183 5.27085 5.30362 5.31516 5.40714 5.42118 5.48504 5.54359 5.62686 5.69768 6.04588 6.42375 6.96108 7.14364 7.38554 7.97174 8.64077 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.005579 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.431018 B = 5017.382350 C = 5179.564323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.095 4.095 4 H 0.086 0.914 5 C -0.091 4.091 6 C -0.087 4.087 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.121 4.121 10 C -0.129 4.129 11 C 0.458 3.542 12 O -0.618 6.618 13 N -0.458 5.458 14 C -0.339 4.339 15 H 0.081 0.919 16 C 0.003 3.997 17 N -0.896 5.896 18 Si 0.986 3.014 19 H -0.259 1.259 20 H -0.285 1.285 21 H -0.279 1.279 22 C 0.221 3.779 23 C 0.256 3.744 24 N -0.503 5.503 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.013 0.987 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.274 0.726 42 H 0.129 0.871 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -4.952 -10.735 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.117 4.117 4 H 0.105 0.895 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.158 4.158 8 C -0.161 4.161 9 C -0.159 4.159 10 C -0.166 4.166 11 C 0.249 3.751 12 O -0.503 6.503 13 N -0.178 5.178 14 C -0.466 4.466 15 H 0.098 0.902 16 C -0.198 4.198 17 N -0.535 5.535 18 Si 0.811 3.189 19 H -0.183 1.183 20 H -0.211 1.211 21 H -0.204 1.204 22 C 0.094 3.906 23 C -0.062 4.062 24 N -0.183 5.183 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.470 -5.312 -10.946 16.052 hybrid contribution -0.353 0.866 1.437 1.715 sum 10.117 -4.446 -9.509 14.579 Atomic orbital electron populations 1.21719 0.97081 1.01636 0.99982 1.21422 0.94795 0.94560 1.02963 1.21348 0.98901 0.97486 0.93924 0.89539 1.21593 0.91432 1.01821 0.98082 1.21821 0.96312 0.99493 0.92877 1.22208 0.94381 1.00399 0.98824 1.22368 0.97668 0.99764 0.96256 1.22488 0.94305 1.01981 0.97121 1.22549 0.98727 0.99473 0.95874 1.21069 0.81316 0.81134 0.91571 1.90484 1.58940 1.63624 1.37276 1.43860 1.60265 1.08010 1.05633 1.19648 1.39053 1.01674 0.86242 0.90151 1.25861 0.93862 0.98856 1.01266 1.69966 1.29525 1.21798 1.32228 0.85029 0.78042 0.77893 0.77968 1.18329 1.21114 1.20436 1.19101 0.85457 1.01243 0.84765 1.29794 0.95500 0.90351 0.90513 1.80889 1.12124 1.11825 1.13503 0.93032 0.91059 0.96747 0.88178 0.92456 0.92264 0.91461 0.90155 0.92102 0.91150 0.91816 0.90960 0.91151 0.91216 0.91805 0.91582 0.91547 0.85333 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.79 71.98 0.70 -4.35 16 2 C -0.10 -3.11 5.08 30.59 0.16 -2.96 16 3 C -0.10 -3.16 1.35 -11.54 -0.02 -3.17 16 4 H 0.09 2.73 4.95 -2.38 -0.01 2.72 16 5 C -0.09 -2.45 3.76 30.59 0.11 -2.33 16 6 C -0.09 -1.75 2.80 -10.07 -0.03 -1.78 16 7 C -0.12 -2.10 6.45 31.32 0.20 -1.90 16 8 C -0.12 -1.90 6.84 31.69 0.22 -1.68 16 9 C -0.12 -1.91 6.91 31.91 0.22 -1.69 16 10 C -0.13 -2.46 5.46 31.67 0.17 -2.29 16 11 C 0.46 20.85 5.57 87.66 0.49 21.34 16 12 O -0.62 -33.34 15.73 -3.05 -0.05 -33.39 16 13 N -0.46 -21.60 2.60 -645.41 -1.68 -23.29 16 14 C -0.34 -17.93 9.37 84.04 0.79 -17.14 16 15 H 0.08 4.62 7.36 -2.91 -0.02 4.60 16 16 C 0.00 0.15 4.93 84.93 0.42 0.57 16 17 N -0.90 -44.96 9.34 21.66 0.20 -44.76 16 18 Si 0.99 40.57 29.60 68.60 2.03 42.60 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 C 0.22 8.73 4.77 84.57 0.40 9.14 16 23 C 0.26 11.26 13.12 89.44 1.17 12.43 16 24 N -0.50 -23.74 18.54 20.01 0.37 -23.36 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.01 0.59 7.27 -2.39 -0.02 0.57 16 28 H 0.10 2.37 6.18 -2.39 -0.01 2.36 16 29 H 0.06 1.98 7.63 -2.39 -0.02 1.96 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 32 H 0.08 1.55 6.22 -2.38 -0.01 1.53 16 33 H 0.06 1.13 7.67 -2.38 -0.02 1.11 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.31 7.47 -2.39 -0.02 1.29 16 41 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 42 H 0.13 5.26 6.16 -2.39 -0.01 5.25 16 43 H 0.13 3.76 6.29 -2.39 -0.02 3.74 16 Total: -1.00 -65.21 340.13 6.88 -58.33 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.99 Total: 19.69 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.02 Total: 4.19 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -1.11 Total: -91.41 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.05 Total: -33.39 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -65.21 6.88 -58.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413304186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.485 kcal (2) G-P(sol) polarization free energy of solvation -65.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds